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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1404 fasta sequence
[GCGGCTATTTCATTTCCTCTTAGAGTATAGTTGCCGTCCATACTCCAAATACGTACTGCCTGATGGGATCGTCAGGGGCACCAGAGTTGACACATGAAATGAGCAGCAATCCTTGTGCCGGCGGGAGAGCAACAATCCTGGGAATCGGCACGGCCGTGCCGGTTCATGTTTATGAGCAGAAGTCATTCCCTGATTATTACTTTGAGATTACCGATAGCAATCACTTGGTCGACCTAAAAGCCAAGTTTGCAAACATCTGCGAGAAGACATCGACGGAGAAGCGGCACATGTACATCTCTGATGAGTGGCTGAGGGCCAACCCGTCGGTGACGGCGTACATGTCCACCTCGCTCAACGTACGGCAGCAGGTCGCCGAGGAGGGCATCCCTCGGCTCGGTGCGGAGGCGGCGCGCAAGGCCATTGACGACTGGGGGAAGCCGGCGTCGAGCATCACCCACATCGTCTTCGCCACCACCAGCACCGGCTGCCTGCCCAGCGCCGACGTCGTGCTCATCAAGCTCCTCGGCCTCCCGCTGTCGACCAAGCGTGTCATGCTCTACCAGGCTGGCTGCTTCGGAGGCACCACGGCGCTGCGTGTGGCCAAGGACATCGCCGAGAGCAACCACGGTGCCAGGGTGCTCGTGGTGACATCCGAGGTGATGTCGCTGGTCATCCGTGGCCCCTCCGAATCCCACATCGGCAACCTCGTCGGCCAAGCCGTGTTCGGCGACGCCGCGGGCGCCGTCGTGGTGGGGTGCTGCCCCACCGCCGACGAGCGTCGTCCCGTGTTCGAGTTGGTCCGGGCATCGCAGGACGTGATACCGGGGACGGACGACGCCGTGGTGGTGAAGGTGCGGCAGGAAGGGGTGGTGATCACCATGCACCGCGACGTGCCGCTCCACGTATCCAACGCCATCGGCGGCGTGGTCAAGAGCACGTTCCACGAGATAGACATGAAGATCACCAGCTACAACGAGGCATTCTGGCTGCTGCACGCCGGTGGGAGGGGGATCGTGGATGGCGTGGAGGAGAGGCTGGGCCTCGGCGGGGAGAAGCTGGCTGCGACGAGGGAGGTGATGAGGCAGTATGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGAAGAGGAGGTCGGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTTGGCCCCGGACTCACCTTGGAGACCATGCTGCTCCGTGCAGTGCCACGTAACAGCTAGCTATACATACGCCAACATGTGATATCGATCGACCGGTAACACGAATAAATTAAGCAGGGCAATCTACAAGTTATATTTTCCAGTGCGTACATGTTATATTTTCCAGTGTGTGACACCAGTAAAAATAAGTCTACATGTTATA]
[+] EMBL AK061132 [GCGGCTATTTCATTTCCTCTTAGAGTATAGTTGCCGTCCATACTCCAAATACGTACTGCCTGATGGGATCGTCAGGGGCACCAGAGTTGACACATGAAATGAGCAGCAATCCTTGTGCCGGCGGGAGAGCAACAATCCTGGGAATCGGCACGGCCGTGCCGGTTCATGTTTATGAGCAGAAGTCATTCCCTGATTATTACTTTGAGATTACCGATAGCAATCACTTGGTCGACCTAAAAGCCAAGTTTGCAAACATCTGCGAGAAGACATCGACGGAGAAGCGGCACATGTACATCTCTGATGAGTGGCTGAGGGCCAACCCGTCGGTGACGGCGTACATGTCCACCTCGCTCAACGTACGGCAGCAGGTCGCCGAGGAGGGCATCCCTCGGCTCGGTGCGGAGGCGGCGCGCAAGGCCATTGACGACTGGGGGAAGCCGGCGTCGAGCATCACCCACATCGTCTTCGCCACCACCAGCACCGGCTGCCTGCCCAGCGCCGACGTCGTGCTCATCAAGCTCCTCGGCCTCCCGCTGTCGACCAAGCGTGTCATGCTCTACCAGGCTGGCTGCTTCGGAGGCACCACGGCGCTGCGTGTGGCCAAGGACATCGCCGAGAGCAACCACGGTGCCAGGGTGCTCGTGGTGACATCCGAGGTGATGTCGCTGGTCATCCGTGGCCCCTCCGAATCCCACATCGGCAACCTCGTCGGCCAAGCCGTGTTCGGCGACGCCGCGGGCGCCGTCGTGGTGGGGTGCTGCCCCACCGCCGACGAGCGTCGTCCCGTGTTCGAGTTGGTCCGGGCATCGCAGGACGTGATACCGGGGACGGACGACGCCGTGGTGGTGAAGGTGCGGCAGGAAGGGGTGGTGATCACCATGCACCGCGACGTGCCGCTCCACGTATCCAACGCCATCGGCGGCGTGGTCAAGAGCACGTTCCACGAGATAGACATGAAGATCACCAGCTACAACGAGGCATTCTGGCTGCTGCACGCCGGTGGGAGGGGGATCGTGGATGGCGTGGAGGAGAGGCTGGGCCTCGGCGGGGAGAAGCTGGCTGCGACGAGGGAGGTGATGAGGCAGTATGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGAAGAGGAGGTCGGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTTGGCCCCGGACTCACCTTGGAGACCATGCTGCTCCGTGCAGTGCCACGTAACAGCTAGCTATACATACGCCAACATGTGATATCGATCGACCGGTAACACGAATAAATTAAGCAGGGCAATCTACAAGTTATATTTTCCAGTGCGTACATGTTATATTTTCCAGTGTGTGACACCAGTAAAAATAAGTCTACATGTTATA]
consensusID : consensus_1244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CAGCTACAACGAGGCGTTCTGCTGCTGCACGCCGCGGGAGGGGGATCGTGGATGGCGTGGAGGAGAAGCTGGATCTCGGGGAGGAGAAGCTGGCGGCGACGAGGGAGGTGATGAGCGCAGTACGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGCGGAGGAGGTCAGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTCGGCCCCGGACTCACCCTTGGAGACCATGCTGCTCCGCGCGCTGCCACGCAACAATTAGCTATGCACATACGCCAAAATGTGATATTGATCGACCAGTACTACACGAATAAATTAAGTAGGGATGTGTTATATTTCCAGCATTACGTGACACCAGTAAATAAATACCAAGATCGTCGTGTTAATTGCTGCTTGTTAGTTGTTACTCGNCGGTTAATTTAGTTGGTTTCGGAACCAACTGAAGTATTGTGGACGCCTGGATCATTGTAATAATTATCCTATTTGGAATAAAGTTATGTGTGATCAAAAAAAA]
[+] EMBL BM419391 [CAGCTACAACGAGGCGTTCTGCTGCTGCACGCCGCGGGAGGGGGATCGTGGATGGCGTGGAGGAGAAGCTGGATCTCGGGGAGGAGAAGCTGGCGGCGACGAGGGAGGTGATGAGCGCAGTACGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGCGGAGGAGGTCAGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTCGGCCCCGGACTCACCCTTGGAGACCATGCTGCTCCGCGCGCTGCCACGCAACAATTAGCTATGCACATACGCCAAAATGTGATATTGATCGACCAGTACTACACGAATAAATTAAGTAGGGATGTGTTATATTTCCAGCATTACGTGACACCAGTAAATAAATACCAAGATCGTCGTGTTAATTGCTGCTTGTTAGTTGTTACTCGNCGGTTAATTTAGTTGGTTTCGGAACCAACTGAAGTATTGTGGACGCCTGGATCATTGTAATAATTATCCTATTTGGAATAAAGTTATGTGTGATCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1244#0 GCGGCTATTTCATTTCCTCTTAGAGTATAGTTGCCGTCCATACTCCAAATACGTACTGCC 60
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 TGATGGGATCGTCAGGGGCACCAGAGTTGACACATGAAATGAGCAGCAATCCTTGTGCCG 120
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 GCGGGAGAGCAACAATCCTGGGAATCGGCACGGCCGTGCCGGTTCATGTTTATGAGCAGA 180
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 AGTCATTCCCTGATTATTACTTTGAGATTACCGATAGCAATCACTTGGTCGACCTAAAAG 240
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 CCAAGTTTGCAAACATCTGCGAGAAGACATCGACGGAGAAGCGGCACATGTACATCTCTG 300
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 ATGAGTGGCTGAGGGCCAACCCGTCGGTGACGGCGTACATGTCCACCTCGCTCAACGTAC 360
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 GGCAGCAGGTCGCCGAGGAGGGCATCCCTCGGCTCGGTGCGGAGGCGGCGCGCAAGGCCA 420
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 TTGACGACTGGGGGAAGCCGGCGTCGAGCATCACCCACATCGTCTTCGCCACCACCAGCA 480
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 CCGGCTGCCTGCCCAGCGCCGACGTCGTGCTCATCAAGCTCCTCGGCCTCCCGCTGTCGA 540
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 CCAAGCGTGTCATGCTCTACCAGGCTGGCTGCTTCGGAGGCACCACGGCGCTGCGTGTGG 600
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 CCAAGGACATCGCCGAGAGCAACCACGGTGCCAGGGTGCTCGTGGTGACATCCGAGGTGA 660
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 TGTCGCTGGTCATCCGTGGCCCCTCCGAATCCCACATCGGCAACCTCGTCGGCCAAGCCG 720
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 TGTTCGGCGACGCCGCGGGCGCCGTCGTGGTGGGGTGCTGCCCCACCGCCGACGAGCGTC 780
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 GTCCCGTGTTCGAGTTGGTCCGGGCATCGCAGGACGTGATACCGGGGACGGACGACGCCG 840
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 TGGTGGTGAAGGTGCGGCAGGAAGGGGTGGTGATCACCATGCACCGCGACGTGCCGCTCC 900
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 ACGTATCCAACGCCATCGGCGGCGTGGTCAAGAGCACGTTCCACGAGATAGACATGAAGA 960
consensus_1244#1 ------------------------------------------------------------
consensus_1244#0 TCACCAGCTACAACGAGGCATTCTGGCTGCTGCACGCCGGTGGGAGGGGGATCGTGGATG 1020
consensus_1244#1 ----CAGCTACAACGAGGCGTTCTG-CTGCTGCACGCCG-CGGGAGGGGGATCGTGGATG 54
*************** ***** ************* *******************
consensus_1244#0 GCGTGGAGGAGAGGCTGGGCCTCGGCGGGGAGAAGCTGGCTGCGACGAGGGAGGTGATGA 1080
consensus_1244#1 GCGTGGAGGAGAAGCTGGATCTCGGGGAGGAGAAGCTGGCGGCGACGAGGGAGGTGATGA 114
************ ***** ***** * ************ *******************
consensus_1244#0 G-GCAGTATGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGAAGAGG 1139
consensus_1244#1 GCGCAGTACGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGCGGAGG 174
* ****** ********************************************* ****
consensus_1244#0 AGGTCGGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATC 1199
consensus_1244#1 AGGTCAGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATC 234
***** ******************************************************
consensus_1244#0 GCCTTTGGCCCCGGACTCACC-TTGGAGACCATGCTGCTCCGTGCAGTGCCACGTAACAG 1258
consensus_1244#1 GCCTTCGGCCCCGGACTCACCCTTGGAGACCATGCTGCTCCGCGCGCTGCCACGCAACAA 294
***** *************** ******************** ** ******* ****
consensus_1244#0 CTAGCTAT--ACATACGCCAACATGTGATATCGATCGACCGGTA--ACACGAATAAATTA 1314
consensus_1244#1 TTAGCTATGCACATACGCCAAAATGTGATATTGATCGACCAGTACTACACGAATAAATTA 354
******* *********** ********* ******** *** **************
consensus_1244#0 AGCAGGGCAATCTACAAGTTATATTTTCCAGTGCGTACATGTTATATTTTCCAGTGT-GT 1373
consensus_1244#1 AGTAGGGATGTGTTATATTTCCAGCATTACGTGACACCAGTAAATAAATACCAAGATCGT 414
** **** * * * ** * * *** ** *** * *** * **
consensus_1244#0 GACACCAGTAAAAATAAGTCTACATGTTATA----------------------------- 1404
consensus_1244#1 CGTGTTAATTGCTGCTTGT-TAGTTGTTACTCGNCGGTTAATTTAGTTGGTTTCGGAACC 473
* * ** ** *****
consensus_1244#0 ------------------------------------------------------------
consensus_1244#1 AACTGAAGTATTGTGGACGCCTGGATCATTGTAATAATTATCCTATTTGGAATAAAGTTA 533
consensus_1244#0 -----------------
consensus_1244#1 TGTGTGATCAAAAAAAA 550
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||