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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1579 fasta sequence
[GAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCAACGAAACGGCAGGACAGGAGGATGAATTCGAAAACAAGGGGATAGAATTTCCCCCGAACGCGGAAGGCGGAACACATCCAACTTTCCCATGTAAAGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAACCTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAATTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTACTATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTTTCATATAGCTTTGGTTAACGGCCGAGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATTTTACTGTAGTTATATGGTTGGCTGTTGGCAAGGTAAATTGTCCGCAACTGCACATTATCCAAGTTGATTAGCCCCTAGGTTTGCAAATAGCAGAAACCATTTTTAAGCCGGTGCTGACGTTTAAATTTCAATGCTTTTCAGCACACGCTTAAACCTCGTTTTCTACGTTCTAATTCCACTTGTTCTGTATAGTGCTATAAATCAGACA]
[+] EMBL AK105240 [GAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCAACGAAACGGCAGGACAGGAGGATGAATTCGAAAACAAGGGGATAGAATTTCCCCCGAACGCGGAAGGCGGAACACATCCAACTTTCCCATGTAAAGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAACCTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAATTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTG ]
[+] EMBL AK109833 [ TCCCATGTAAAGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAACCTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAATTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTACTATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTTTCATATAGCTTTGGTTAACGGCCGAGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATTTTACTGTAGTTATATGGTTGGCTGTTGGCAAGGTAAATTGTCCGCAACTGCACATTATCCAAGTTGATTAGCCCCTAGGTTTGCAAATAGCAGAAACCATTTTTAAGCCGGTGCTGACGTTTAAATTTCAATGCTTTTCAGCACACGCTTAAACCTCGTTTTCTACGTTCTAATTCCACTTGTTCTGTATAGTGCTATAAATCAGACA]
[+] EMBL CB667697 [ TCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAGCACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCGGCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACCGCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGGAGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCCACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCAT ]
consensusID : consensus_12444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1377 fasta sequence
[CATTCTAAAATTTTGGTTCTAGCTAAGATATGCTAGACTAGTGATGAATCATTCCTAGAGACTACTGGTTATCTTACTTAAGACATTCCCATGTTATGTTTGTTTTGTGATGCAGTTTATTCATGGTAACAAATTTTAGTTGTCAAATATGTTTTGCTTTCCCCATGACCATGGAAAAGCTATAGATAGCACATTCTCACCAGTCTTATTATTCAATGGCAATTGTCAAGTCATGTGATTTCTTGGTTTAGCTCTGAAATTTGTCTGTGTTTGTCTTCTGGCAACTAACATGTTAGTTTAGAATGACTGATATCGTGGCCTGTTACTTGCTTACTCATGTCTTGCTTATCTAGCAAGTACTCCATCTTTCCTAGGTTCTTATATTTTGGGACAGAGGAAGTAGCTACTACTGGTCTATTTTTTGTTAGCTAATGAAAAAACAAATATTTGTCCTGTAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTTGCAGCCAAGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCT-GTTTAAGGTCAAAGGATGCTAATAATCTTCTCTTCTTCTCCTTAAA]
[+] EMBL AK064251 [CATTCTAAAATTTTGGTTCTAGCTAAGATATGCTAGACTAGTGATGAATCATTCCTAGAGACTACTGGTTATCTTACTTAAGACATTCCCATGTTATGTTTGTTTTGTGATGCAGTTTATTCATGGTAACAAATTTTAGTTGTCAAATATGTTTTGCTTTCCCCATGACCATGGAAAAGCTATAGATAGCACATTCTCACCAGTCTTATTATTCAATGGCAATTGTCAAGTCATGTGATTTCTTGGTTTAGCTCTGAAATTTGTCTGTGTTTGTCTTCTGGCAACTAACATGTTAGTTTAGAATGACTGATATCGTGGCCTGTTACTTGCTTACTCATGTCTTGCTTATCTAGCAAGTACTCCATCTTTCCTAGGTTCTTATATTTTGGGACAGAGGAAGTAGCTACTACTGGTCTATTTTTTGTTAGCTAATGAAAAAACAAATATTTGTCCTGTAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTTGCAGCC AGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCT G ]
[-] EMBL CB685048 [ TTTGGTTGCAGCCAAGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCT GTTTAAGGTCAAAGGATGCTAATAATCTTCTCTTCTTCTCCTTAAA]
[+] EMBL CB685047 [ CAGCCCTGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTCTCCCCTGAAGAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCACCGGCAGGCATCCATCTAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTGCCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGCGGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCGAAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTGCCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATTGCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTTTCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTCATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTTAAGGGATGTTTTGTTCGCCCTGGTTTGATGTCAAAGGATGCTAATAATCTTC ]
consensusID : consensus_12444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 795 fasta sequence
[AAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG-CCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATNAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGAT-ATT-CTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAA-TTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTT-CCATGC-TGTTTCTGCATATAATTTGGTAA-TGGGACGACAAACTGAACCAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGCCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTATTTTCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTCTTCATATAGCTCTGGTTAACGGCCGAGGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATGGTGCGGTAGTTATATGGTTGGCTGTTGGCCAAACAAAAAAGGG]
[-] EMBL AU183645 [AAGCGCCGCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG CCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGCAGCCGCGGCAGTACATNAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGAT ATT CTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTA GCAATGAACTGCTACTGAGCATGGATACAGAATTTTGGTGGCTCA TTTGAACTAT GGTTTACAACTTTCCCATGCTTGTTTCTGCATATAATTTGGTAATTGGGA ]
[-] EMBL CB667698 [ CCGCCACGGACCACAAGGATGACAAGAAGCCGGAGGCCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGGACGTGGAGGAGCTGGAGATGATGAAGATGATGGGGATCCCCGTCGGCTTCGACTCCACCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTGGTCACCAAGCGGCAGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGAT ATT CTGATATTGGGTTGCATTGGACTCCTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAA TTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTT CCATGC TGTTTCTGCATATAATTTGGTAA TGGGACGACAAACTGAACCAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGCCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTATTTTCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTCTTCATATAGCTCTGGTTAACGGCCGAGGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATGGTGCGGTAGTTATATGGTTGGCTGTTGGCCAAACAAAAAAGGG]
[-] EMBL C74068 [ GTTCAACCGGCCCCNTCCACCGGAGCGCAACCGCTGAGGAGAGGAAGGATGATGAAGATAATTCCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAA TTTGGTGGCTCATTTTGAACTATGGGTTTACAACTTT CCATGC TGTTTCTGCATATAATTTGGTAA TGGGACGACAAACTGAAACAGCCTTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATTTGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTACTATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAAT ]
consensusID : consensus_12444#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[CCTAACTCTCCTAGCGCCATCCTTTCAAATGAGAGTAAAGATCTTGCTAACATGGTATTCGATGGATGGGAGAAAAGTATGCTCCTTGGTGCTCATTGCTGCATAAGGTCTTACATGAATTAGGATGATATCCTAATACANATCAAACTGCAAATCATATCTGCCCCAAATTGATGAAATATAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCT]
[+] EMBL OSS2925A [CCTAACTCTCCTAGCGCCATCCTTTCAAATGAGAGTAAAGATCTTGCTAACATGGTATTCGATGGATGGGAGAAAAGTATGCTCCTTGGTGCTCATTGCTGCATAAGGTCTTACATGAATTAGGATGATATCCTAATACANATCAAACTGCAAATCATATCTGCCCCAAATTGATGAAATATAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTGGAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGGATACAGAATTTGGTGGCTCATTTTTGAACTATGGGTTTACAACTTTCCATGCTGTTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12444#1 ------------------------------------------------------------
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 GAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGG 60
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ------------------------------------------------------------
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 CGGAATCAGCGGGGAAAGAAGACCCAACGAAACGGCAGGACAGGAGGATGAATTCGAAAA 120
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ------------------------------------------------------------
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 CAAGGGGATAGAATTTCCCCCGAACGCGGAAGGCGGAACACATCCAACTTTCCCATGTAA 180
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ------------------------------------------------------------
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 AGCCCTCTCCCCCTCGGCGAAACCCTAGCTCCTCTCCTCTCCTCTTCCTCGTCCTCGCAG 240
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ------------------------------------------------------------
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 CACAAATGTCCGACCGCCGCCACGACCGGGAGAAGCCCCGCGACCGCGACCGGGAACGCG 300
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ------------------------------------------------------------
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 GCCGAGACGGCGAGCGCGACCGCGAGCTCGACCGCCCCCGCGACCGCGACCACCGTGACC 360
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ------------------------------CATTCTAAAATTTTGGTTCTAGCTAAGATA 30
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 GCGACCGGGACAAGGAGAGGGATCGAGATCGCGACCGCGACCGCGAACGCCGCCGTGGGG 420
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 TGCTAGACTAGTGATGAATCATTCCTAGAGACTACTGGTTATCTTACTTAAGACATTCCC 90
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 AGCGTGACCGGAAGCGCTCCCGCTCTCCCTCCGCCGACCGCTCCCACCGCCGCCACTCCC 480
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ATGTTATGTTTGTTTTGTGATGCAGTTTATTCATGGTAACAAATTTTAGTTGTCAAATAT 150
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 ACTCCCACTCCCACCGCGGCCGCTCGTCCCCGTCCCCGGACGCCGGCCGCCACAAGCGCC 540
consensus_12444#2 -----------------------------------------------------AAGCGCC 7
consensus_12444#1 GTTTTGCTTTCCCCATGACCATGGAAAAGCTATAGATAGCACATTCTCACCAGTCTTATT 210
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 GCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG 600
consensus_12444#2 GCCGCGACGGGTCCCCCGCCGCCGCCGCCACCGACCACAAGGACGACAAGAAGCCGGAGG 67
consensus_12444#1 ATTCAATGGCAATTGTCAAGTCATGTGATTTCTTGGTTTAGCTCTGAAATTTGTCTGTGT 270
consensus_12444#3 ---------------------------------------------------------CCT 3
consensus_12444#0 CCCCCGTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGG 660
consensus_12444#2 CCCC-GTGGTGCCCAAGAGCGCCGCCGGGGACGGGGTCGCGCCGGGCGACGGGGATGTGG 126
consensus_12444#1 TTGTCTTCTGGCAACTAACATGTTAGTTTAGAATGACTGATATCGTGGCCTGTTACTTGC 330
consensus_12444#3 AACTCTCCTAGCG-CCATCCTTTCAAATGAGAGTAAAGATCTTGCTAACATGGTATTCGA 62
consensus_12444#0 ACGTGGAGGAGC--TGGAGATGATGAA-GATGATGGGGATCCCCGTCGGCTTCGACTCCA 717
consensus_12444#2 ACGTGGAGGAGC--TGGAGATGATGAA-GATGATGGGGATCCCCGTCGGCTTCGACTCCA 183
* ** * * * * * * *
consensus_12444#1 TTACTCATGTCTTGCTTATCTAGCAAGTACTCCATCTTTCCTAGGTTCTTATATTTTGG- 389
consensus_12444#3 TGGATGGGAGAAAAGTATGCTCCTTGGTGCTCATTGCTGCATAAGGTCTTACAT---GA- 118
consensus_12444#0 CCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGC 777
consensus_12444#2 CCAAGGGGAAGCACGTCCCCGACGCCGACGTCAGCGGGGTGCGCGTCGTCACCAAGCGGC 243
* * * ** * * * *
consensus_12444#1 ------GACAGAG--GAAGTAGCTACTACTGGTCTATTTTTTGTTAGCTAATGAAAAAAC 441
consensus_12444#3 ------ATTAGGA--TGATATCCTAATACANATCAAACT---GCAAATCATATCTGCCCC 167
consensus_12444#0 AGCCGCGGCAGTACATGAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCA 837
consensus_12444#2 AGCCGCGGCAGTACATNAACCGCCGTGGCGGGTTCAACCGGCCCCTTCCACCGGAGCGCA 303
** * * * * * *
consensus_12444#1 AAATATTTGTCCTGTA-GGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 500
consensus_12444#3 AAATTGATGAAATATAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 227
consensus_12444#0 ACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 897
consensus_12444#2 ACCGCTGAGGAGAGGAAGGATGATGAAGATATTCTGATATTGGGTTGCATTGGACTACTG 363
* * * *******************************************
consensus_12444#1 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATG------ 554
consensus_12444#3 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATG------ 281
consensus_12444#0 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATGTATAAC 957
consensus_12444#2 GAACATGTTGCTGTCTTGCTGGACATAGTAGGCAATGAACTGCTACTGAGCATG------ 417
******************************************************
consensus_12444#1 ------------------------------------------------------------
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 CTTGATGGCTAGTTACTTCGCAAAACTTTGTAGACTATGGGATCTCTCTTTTTTCATCAA 1017
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ---------------------GATACAGAATTTGGTGGCTCATTTT-GAACTATGGGTTT 592
consensus_12444#3 ---------------------GATACAGAATTTGGTGGCTCATTTTTGAACTATGGGTTT 320
consensus_12444#0 TTGCTCTGTCGACATTCCAGGGATACAGAATTTGGTGGCTCATTTT-GAACTATGGGTTT 1076
consensus_12444#2 ---------------------GATACAGAATTTGGTGGCTCATTTT-GAACTATGGGTTT 455
************************* *************
consensus_12444#1 ACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCC 652
consensus_12444#3 ACAACTTTCCATGCTGTTTCT--------------------------------------- 341
consensus_12444#0 ACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAAACAGCC 1136
consensus_12444#2 ACAACTTTCCATGCTGTTTCTGCATATAATTTGGTAATGGGACGACAAACTGAACCAGCC 515
*********************
consensus_12444#1 TTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATT 712
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 TTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATT 1196
consensus_12444#2 TTTACTTTCAGTTGTAGATTCTGGAATGAGTTTATTGGTGATGGGTGATGGTTACAAATT 575
consensus_12444#1 TGGTTGCAGCCAAGTACACACGAAGTCATCTCAGGTGCATCATGGTTTCTGACATCATTC 772
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 TGGTGGGTGATGGTTGCAAATTTGGCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTAC 1256
consensus_12444#2 TGGTGGGTGATGGTTGCAAATTTGCCCGCAGCTTTATACTCTGAACGTCTTGCTGAGTAT 635
consensus_12444#1 TCCCCTGAA-GAAGCAAATGAGGTGCCACCTCTTCATGGCTCTCCCCAGCTGCAACTTCA 831
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 TATCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACT-TTCATATAGCT 1315
consensus_12444#2 TTTCTTGCATGCAGCGTTATAATTCTGAATATGTCGTTAAATTTAACTCTTCATATAGCT 695
consensus_12444#1 CCGGCAGGCATCCATC-TAGCTCCGGCTCCTTCCCGCGCTTCCTCCCCCGCCGGCCGCTG 890
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 TTGGTTAACGGCCGAG-TTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATTTTA 1374
consensus_12444#2 CTGGTTAACGGCCGAGGTTTTGCCTGTAACTGGTCAAGAGTTGGTTTCCCCTGAATGGTG 755
consensus_12444#1 CCGCCATCGCCTCGGCTGGTGAGCCGAGCGCTCTGCATCGCCGGCGACGGGCAAAGCAGC 950
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 CTGTAGTTATATGGTTGGCTGTTGGCAAGGTAAATTGTCCGCAACTGCACATTATCCAAG 1434
consensus_12444#2 CGGTAGTTATATGGTTGGCTGTTGGCCAAACAAAAAAGGG-------------------- 795
consensus_12444#1 GGTGGTGCCGCGTCGAGCGGCGGCGGGCTCTTGGGCTTCCCCGGCTCGTCCTCCCACTCG 1010
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 TTGATTAGCCCCTAGGTTTGCAAATAGCAGAAACCATTTTTAAGCCGGTGCTGACGTTTA 1494
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 AAGGGCACCCTCCCGCTCGCCGGGCGGTACACCCTCGACGAGTGCCCCAGCTCGTCGCTG 1070
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 AATTTCAA--TGCTTTTCAGCACACGCTTAAACCTCGTTTTCTACGTTCTAATTCCACTT 1552
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 CCGCCTGCGCCGTGCAGGAGACCGGCCGGCGACGTGGCGGCGGCGGCGGCGCTCTCCATT 1130
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 GT-TCTGTATAGTGCTATAAATCAGACA-------------------------------- 1579
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 GCTTTCCTCCCTTCTGTTCTCCTCTGTTCCATCCACTTCACTTTTTTTCTGGCTAGCTTT 1190
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 ------------------------------------------------------------
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 TCCTCTGGAGTTTTGAGTTAGGACAGCATTAGAGGGGTGTCTTATATAGGCTCAATTGTC 1250
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 ------------------------------------------------------------
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 ATTTGCCCAGTTTATGTGCTTGCTAAGAATGCCCTTTTGCAAGTCAAAATGCATTGGTTT 1310
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 ------------------------------------------------------------
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 AAGGGATGTTTTGTTCGCCCTGTTTAAGGTCAAAGGATGCTAATAATCTTCTCTTCTTCT 1370
consensus_12444#3 ------------------------------------------------------------
consensus_12444#0 ------------------------------------------------------------
consensus_12444#2 ------------------------------------------------------------
consensus_12444#1 CCTTAAA 1377
consensus_12444#3 -------
consensus_12444#0 -------
consensus_12444#2 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||