cluster # 12446

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Oryza sativa
cluster # 12446 cluster # 12446 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12446#0 length = 2680 sequences # 8

consensus_12446#1 length = 414 sequences # 2

consensusID : consensus_12446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2680
fasta sequence

                              [CCGCACTCTCACCCGCTTCCTCTCCAAGCCCCCTTTCAAGCCCAAGCCCACCAACCCCTCGCCGCCGCCGCCCCCGCCGCCGCCGGGGATCCAGCCTCCTCCACCGGCGCTGCCCGGCATGCCGCACGGACGCCCGCCGCCGCCGTTCCCGGGAGGGCGGGACGCGTTCCCGCAGGCGGCGTCGACGGTGGTCCCGGACCCGGCCAGGTTCTTCGCGCCGGCGCTGCTCTCGTCGCCGCTCCCCACCAACTCCTTCTTCCAGAACTTCGTGCTCAAGAACGGCGACCAGCCGGAGTACATCCACCCGTACTCGGTCCGCTCCGCCGCCGCCGCGCTCACCCTGTGCTACCCGGCGCGGAACCACTCCCCGTCGTTCGTCATCCAGACGTTCGTCGAGGACCTGACCGTCTCCGCGGCGTCCGACGCCGCGGCGGCCGCGGCGGGGCAGAGGCACCGGGTCGCCGCGTTCGACGACCTCTCAGTCACCCTCGACGTCTCGCCGTCGCTCAGGGCGTTCCTCGTCAGGGGCTGCCCCTTTGTCACCGTCGCCACCGCCGACGCCGCGGGCCCCGTCGACATCTCCGTCGCGTCCGTCCACGCCTTCATCGAGGTGGCCTCCTGCGACGACGCGCTCACCAAGTGGCGGCTCCGGATGAACAGCGGCCAGACCTTCCTCCTCTACGCGTCCGCGCCGATCCGCCTCGCGCAGTCCAGCGTCACGCAGCTGTCGGCCCCCGGCTTCTCCGGCGTCATCCGGGTCGCCTACCTGCCGGACCCGTCCATGGAGGCGGTTCTTGATCAGTACAGCCGGTGCTTCCCCACCGCCGGCGAGGCCTCGCTGAACCGCCCCTTCTGCGTCGAGTACACCTGGCGCAAGCAAGGGTGGGGAGACCTCCTCATGCTCGCCCATCCCCTCCACCTCCGCCTCCTCTCCGAGGATTGCTGCGTCCGGGTGCTCGACGATTTCAGGTACCGGAGTATCGACGGCGACATGGTCGGCGTCGTCGGCGATTCTTGGGTTCTCCGGACCGATCCGGTGTCCCCCACATGGCACTCGATGCGGGGCATCAGCGACGACGGGGTGGGCGAGGTCGCCGCCGCGCTGCGCAAGGATGTGGATGCCCTTGCTTCCAGCTCCATCACGACCACCTCCTCCTACTTCTACGGCAAGGCGATCGCCAGGGCGGCGAGGTTCGCCGTAATCGCCGAGGAGGTCGGCTGCCCTGACGTCATCCCGGCGGTGCAGCGATTCTTGAAGGCCACCGTCACGCCATGGCTGGATGGCAGCTTCCAGGGCAATGGATTCCTCTATGAACCCAAATGGGGTGGCCTTGTCACATTGCAGGGATCCAAGGACACCGGCGCCGATTTCGGCTTCGGCATTTACAATGATCACCACTACCATTTGGGGTACTTCTTGTACGCCATTGCTGTGCTTGCCAAGATTGATCCCTCCTGGGGGAGGAAGTACATGCCCCAGGCCTACTCCATGGTTGCAGATTTCATGACATTGTCGCGGAAACACGGCGCAAGCTACACAAGATTGAGGATGTTTGATCTCTGGAAGCTCCATTCCTGGGCCGGAGGTTTGACAGAATTTGCGGATGGGCGCAACCAGGAGAGCACTAGCGAGGCCGTGAATGCGTACTACTCCGCTGCGCTTCTCGGATTGAGCTATGGGGATACTCACCTTGTCTCCATCGGCGCGACATTGACCGCATTGGAGATGCTTGCAGCACAGACATGGTGGCATGTCCGTGAAGGTGACACCATCTACGAAGACGATTTCACCGGCAACAACCGTGTCGTCGGCGTCCTGTGGGCGAACAAGAGGGACAGTGGCCTCTGGTTCGCTCCACCGGAGTGGAAGGAATGCAGGCTGGGGATCCAGCTGCTGCCTGTCCTGCCGATCAGCGAGGCGCTGTTCCCGGACATCAGCTTCGTCAAGGAGCTGGTGGACTGGACAATGCCGGCATTGTCAAGGGAAGGGGTCGGAGAAGGGTGGAAGGGCTTCGTGTACGCCCTGGAGGGGATCTACAATAAGGAATCGGCATTGCAGAAGACGAGGGCGCTGACGGGGCACGACGATGGCAACTCCCTGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCA-TTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAGTTTTGAGTTGCCTATGTTTTC-TTTTTTTTTTCTCTCTCTTTGTCTCGGTTTTGAGAGTGAGATTTCTCCTGCTGATAGCCTGCTAGCAGGTGTGGCCCATTCTCAATCTCAGGGCTCAGGCCAGTTTATTTGGAATGCAACTTACACAAAGCTTCCCCCTTAAACCACTAGAATATACTTCCTCCGTTTTATAATGTATAATGTATGATGTTGTTGACTTTTTAATCAACATTTAAT]

[+] EMBL AK100032             [CCGCACTCTCACCCGCTTCCTCTCCAAGCCCCCTTTCAAGCCCAAGCCCACCAACCCCTCGCCGCCGCCGCCCCCGCCGCCGCCGGGGATCCAGCCTCCTCCACCGGCGCTGCCCGGCATGCCGCACGGACGCCCGCCGCCGCCGTTCCCGGGAGGGCGGGACGCGTTCCCGCAGGCGGCGTCGACGGTGGTCCCGGACCCGGCCAGGTTCTTCGCGCCGGCGCTGCTCTCGTCGCCGCTCCCCACCAACTCCTTCTTCCAGAACTTCGTGCTCAAGAACGGCGACCAGCCGGAGTACATCCACCCGTACTCGGTCCGCTCCGCCGCCGCCGCGCTCACCCTGTGCTACCCGGCGCGGAACCACTCCCCGTCGTTCGTCATCCAGACGTTCGTCGAGGACCTGACCGTCTCCGCGGCGTCCGACGCCGCGGCGGCCGCGGCGGGGCAGAGGCACCGGGTCGCCGCGTTCGACGACCTCTCAGTCACCCTCGACGTCTCGCCGTCGCTCAGGGCGTTCCTCGTCAGGGGCTGCCCCTTTGTCACCGTCGCCACCGCCGACGCCGCGGGCCCCGTCGACATCTCCGTCGCGTCCGTCCACGCCTTCATCGAGGTGGCCTCCTGCGACGACGCGCTCACCAAGTGGCGGCTCCGGATGAACAGCGGCCAGACCTTCCTCCTCTACGCGTCCGCGCCGATCCGCCTCGCGCAGTCCAGCGTCACGCAGCTGTCGGCCCCCGGCTTCTCCGGCGTCATCCGGGTCGCCTACCTGCCGGACCCGTCCATGGAGGCGGTTCTTGATCAGTACAGCCGGTGCTTCCCCACCGCCGGCGAGGCCTCGCTGAACCGCCCCTTCTGCGTCGAGTACACCTGGCGCAAGCAAGGGTGGGGAGACCTCCTCATGCTCGCCCATCCCCTCCACCTCCGCCTCCTCTCCGAGGATTGCTGCGTCCGGGTGCTCGACGATTTCAGGTACCGGAGTATCGACGGCGACATGGTCGGCGTCGTCGGCGATTCTTGGGTTCTCCGGACCGATCCGGTGTCCCCCACATGGCACTCGATGCGGGGCATCAGCGACGACGGGGTGGGCGAGGTCGCCGCCGCGCTGCGCAAGGATGTGGATGCCCTTGCTTCCAGCTCCATCACGACCACCTCCTCCTACTTCTACGGCAAGGCGATCGCCAGGGCGGCGAGGTTCGCCGTAATCGCCGAGGAGGTCGGCTGCCCTGACGTCATCCCGGCGGTGCAGCGATTCTTGAAGGCCACCGTCACGCCATGGCTGGATGGCAGCTTCCAGGGCAATGGATTCCTCTATGAACCCAAATGGGGTGGCCTTGTCACATTGCAGGGATCCAAGGACACCGGCGCCGATTTCGGCTTCGGCATTTACAATGATCACCACTACCATTTGGGGTACTTCTTGTACGCCATTGCTGTGCTTGCCAAGATTGATCCCTCCTGGGGGAGGAAGTACATGCCCCAGGCCTACTCCATGGTTGCAGATTTCATGACATTGTCGCGGAAACACGGCGCAAGCTACACAAGATTGAGGATGTTTGATCTCTGGAAGCTCCATTCCTGGGCCGGAGGTTTGACAGAATTTGCGGATGGGCGCAACCAGGAGAGCACTAGCGAGGCCGTGAATGCGTACTACTCCGCTGCGCTTCTCGGATTGAGCTATGGGGATACTCACCTTGTCTCCATCGGCGCGACATTGACCGCATTGGAGATGCTTGCAGCACAGACATGGTGGCATGTCCGTGAAGGTGACACCATCTACGAAGACGATTTCACCGGCAACAACCGTGTCGTCGGCGTCCTGTGGGCGAACAAGAGGGACAGTGGCCTCTGGTTCGCTCCACCGGAGTGGAAGGAATGCAGGCTGGGGATCCAGCTGCTGCCTGTCCTGCCGATCAGCGAGGCGCTGTTCCCGGACATCAGCTTCGTCAAGGAGCTGGTGGACTGGACAATGCCGGCATTGTCAAGGGAAGGGGTCGGAGAAGGGTGGAAGGGCTTCGTGTACGCCCTGGAGGGGATCTACAATAAGGAATCGGCATTGCAGAAGACGAGGGCGCTGACGGGGCACGACGATGGCAACTCCCTGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCA TTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAGTTTTGAGTTGCCTATGTTTTC TTTTTTTTTTCTCTCTCTTTGTCTCGGTTTTGAGAGTGAGATTTCTCCTGCTGATAGCCTGCTAGCAGGTGTGGCCCATTCTCAATCTCAGGGCTCAGGCCAGTTTATTTGGAATGCAACTTACACAAAGCTTCCCCCTTAAACCACTAGAATATACTTCCTCCGTTTTATAATGTATAATGTATGATGTTGTTGACTTTTTAATCAACATTTAAT]
[+] EMBL AK100548             [CCGCACTCTCACCCGCTTCCTCTCCAAGCCCCCTTTCAAGCCCAAGCCCACCAACCCCTCGCCGCCGCCGCCCCCGCCGCCGCCGGGGATCCAGCCTCCTCCACCGGCGCTGCCCGGCATGCCGCACGGACGCCCGCCGCCGCCGTTCCCGGGAGGGCGGGACGCGTTCCCGCAGGCGGCGTCGACGGTGGTCCCGGACCCGGCCAGGTTCTTCGCGCCGGCGCTGCTCTCGTCGCCGCTCCCCACCAACTCCTTCTTCCAGAACTTCGTGCTCAAGAACGGCGACCAGCCGGAGTACATCCACCCGTACTCGGTCCGCTCCGCCGCCGCCGCGCTCACCCTGTGCTACCCGGCGCGGAACCACTCCCCGTCGTTCGTCATCCAGACGTTCGTCGAGGACCTGACCGTCTCCGCGGCGTCCGACGCCGCGGCGGCCGCGGCGGGGCAGAGGCACCGGGTCGCCGCGTTCGACGACCTCTCAGTCACCCTCGACGTCTCGCCGTCGCTCAGGGCGTTCCTCGTCAGGGGCTGCCCCTTTGTCACCGTCGCCACCGCCGACGCCGCGGGCCCCGTCGACATCTCCGTCGCGTCCGTCCACGCCTTCATCGAGGTGGCCTCCTGCGACGACGCGCTCACCAAGTGGCGGCTCCGGATGAACAGCGGCCAGACCTTCCTCCTCTACGCGTCCGCGCCGATCCGCCTCGCGCAGTCCAGCGTCACGCAGCTGTCGGCCCCCGGCTTCTCCGGCGTCATCCGGGTCGCCTACCTGCCGGACCCGTCCATGGAGGCGGTTCTTGATCAGTACAGCCGGTGCTTCCCCACCGCCGGCGAGGCCTCGCTGAACCGCCCCTTCTGCGTCGAGTACACCTGGCGCAAGCAAGGGTGGGGAGACCTCCTCATGCTCGCCCATCCCCTCCACCTCCGCCTCCTCTCCGAGGATTGCTGCGTCCGGGTGCTCGACGATTTCAGGTACCGGAGTATCGACGGCGACATGGTCGGCGTCGTCGGCGATTCTTGGGTTCTCCGGACCGATCCGGTGTCCCCCACATGGCACTCGATGCGGGGCATCAGCGACGACGGGGTGGGCGAGGTCGCCGCCGCGCTGCGCAAGGATGTGGATGCCCTTGCTTCCAGCTCCATCACGACCACCTCCTCCTACTTCTACGGCAAGGCGATCGCCAGGGCGGCGAGGTTCGCCGTAATCGCCGAGGAGGTCGGCTGCCCTGACGTCATCCCGGCGGTGCAGCGATTCTTGAAGGCCACCGTCACGCCATGGCTGGATGGCAGCTTCCAGGGCAATGGATTCCTCTATGAACCCAAATGGGGTGGCCTTGTCACATTGCAGGGATCCAAGGACACCGGCGCCGATTTCGGCTTCGGCATTTACAATGATCACCACTACCATTTGGGGTACTTCTTGTACGCCATTGCTGTGCTTGCCAAGATTGATCCCTCCTGGGGGAGGAAGTACATGCCCCAGGCCTACTCCATGGTTGCAGATTTCATGACATTGTCGCGGAAACACGGCGCAAGCTACACAAGATTGAGGATGTTTGATCTCTGGAAGCTCCATTCCTGGGCCGGAGGTTTGACAGAATTTGCGGATGGGCGCAACCAGGAGAGCACTAGCGAGGCCGTGAATGCGTACTACTCCGCTGCGCTTCTCGGATTGAGCTATGGGGATACTCACCTTGTCTCCATCGGCGCGACATTGACCGCATTGGAGATGCTTGCAGCACAGACATGGTGGCATGTCCGTGAAGGTGACACCATCTACGAAGACGATTTCACCGGCAACAACCGTGTCGTCGGCGTCCTGTGGGCGAACAAGAGGGACAGTGGCCTCTGGTTCGCTCCACCGGAGTGGAAGGAATGCAGGCTGGGGATCCAGCTGCTGCCTGTCCTGCCGATCAGCGAGGCGCTGTTCCCGGACATCAGCTTCGTCAAGGAGCTGGTGGACTGGACAATGCCGGCATTGTCAAGGGAAGGGGTCGGAGAAGGGTGGAAGGGCTTCGTGTACGCCCTGGAGGGGATCTACAATAAGGAATCGGCATTGCAGAAGACGAGGGCGCTGACGGGGCACGACGATGGCAACTCCCTGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCA TTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAGTTT                                                                                                                                                                                                                                           ]
[+] EMBL AK105910             [ CGCACTCTCACCCGCTTCCTCTCCAAGCCCCCTTTCAAGCCCAAGCCCACCAACCCCTCGCCGCCGCCGCCCCCGCCGCCGCCGGGGATCCAGCCTCCTCCACCGGCGCTGCCCGGCATGCCGCACGGACGCCCGCCGCCGCCGTTCCCGGGAGGGCGGGACGCGTTCCCGCAGGCGGCGTCGACGGTGGTCCCGGACCCGGCCAGGTTCTTCGCGCCGGCGCTGCTCTCGTCGCCGCTCCCCACCAACTCCTTCTTCCAGAACTTCGTGCTCAAGAACGGCGACCAGCCGGAGTACATCCACCCGTACTCGGTCCGCTCCGCCGCCGCCGCGCTCACCCTGTGCTACCCGGCGCGGAACCACTCCCCGTCGTTCGTCATCCAGACGTTCGTCGAGGACCTGACCGTCTCCGCGGCGTCCGACGCCGCGGCGGCCGCGGCGGGGCAGAGGCACCGGGTCGCCGCGTTCGACGACCTCTCAGTCACCCTCGACGTCTCGCCGTCGCTCAGGGCGTTCCTCGTCAGGGGCTGCCCCTTTGTCACCGTCGCCACCGCCGACGCCGCGGGCCCCGTCGACATCTCCGTCGCGTCCGTCCACGCCTTCATCGAGGTGGCCTCCTGCGACGACGCGCTCACCAAGTGGCGGCTCCGGATGAACAGCGGCCAGACCTTCCTCCTCTACGCGTCCGCGCCGATCCGCCTCGCGCAGTCCAGCGTCACGCAGCTGTCGGCCCCCGGCTTCTCCGGCGTCATCCGGGTCGCCTACCTGCCGGACCCGTCCATGGAGGCGGTTCTTGATCAGTACAGCCGGTGCTTCCCCACCGCCGGCGAGGCCTCGCTGAACCGCCCCTTCTGCGTCGAGTACACCTGGCGCAAGCAAGGGTGGGGAGACCTCCTCATGCTCGCCCATCCCCTCCACCTCCGCCTCCTCTCCGAGGATTGCTGCGTCCGGGTGCTCGACGATTTCAGGTACCGGAGTATCGACGGCGACATGGTCGGCGTCGTCGGCGATTCTTGGGTTCTCCGGACCGATCCGGTGTCCCCCACATGGCACTCGATGCGGGGCATCAGCGACGACGGGGTGGGCGAGGTCGCCGCCGCGCTGCGCAAGGATGTGGATGCCCTTGCTTCCAGCTCCATCACGACCACCTCCTCCTACTTCTACGGCAAGGCGATCGCCAGGGCGGCGAGGTTCGCCGTAATCGCCGAGGAGGTCGGCTGCCCTGACGTCATCCCGGCGGTGCAGCGATTCTTGAAGGCCACCGTCACGCCATGGCTGGATGGCAGCTTCCAGGGCAATGGATTCCTCTATGAACCCAAATGGGGTGGCCTTGTCACATTGCAGGGATCCAAGGACACCGGCGCCGATTTCGGCTTCGGCATTTACAATGATCACCACTACCATTTGGGGTACTTCTTGTACGCCATTGCTGTGCTTGCCAAGATTGATCCCTCCTGGGGGAGGAAGTACATGCCCCAGGCCTACTCCATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB640632             [                                                                                                                           GCACGGACGCCCGCCGCCGCCGTTCCCGGGAGGGCGGGACGCGTTCCCGCAGGCGGCGTCGACGGTGGTCCCGGACCCGGCCAGGTTCTTCGCGCCGGCGCTGCTCTCGTCGCCGCTCCCCACCAACTCCTTCTTCCAGAACTTCGTGCTCAAGAACGGCGACCAGCCGGA TTCTTTTCCCCGTACTCGGTCCGCTCCGCCGCCGCCGCGCTCACCCTGTGCTACCCGGCGCCGCACCACTTCCCGTCGTTCGTCATCCAGACGTTCGTCGAGGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI808343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCCAGCTGCTGCCTGTCCTGCCGATCAGCGA GCGCTGTTCCCGGACATCAGCTTCGTCAAGGAGCTGGTGGACTGGAC ATGCCGGCATTGTCAAGGG AGGGGTCGGAGAAGGGTGGAAGGGCTTCGTGTACGCCCTGGAGGGGATCTACCATAAGGAATCGGCATTGCAGAAGACGAGGGCCCTGACGGGGCACGACGACGGCAACTCCCTGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCACTTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCCAAAaaaaaaa                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA767529             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGCAATTCCCTGACC ACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCA TTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAGTTTTGAGTTGCCTATGTTTTCTTTTTTTTTTTCTCTCTCTTTGTCTCGGTTTTGAGAGTGAGATTTCTCCTGCTGATAGCCTGCTAGCAGGTGTGGCCCATTCTCAATCTCAGGGCTCAGGCCAGTTTATTTGGAATGCAACTTACACAAAGATTCCCCCTTAAACCACTAGAATATACTTCCTCCGTTTTATAATGTACAATGTATGATGTTGTTGACTTTTTAATCAACATTTGAT]
[+] EMBL AU163895             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTGCTGCTGGTACCGCCAGTATTGCCA TTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAaaa                                                                                                                                                                                                                                            ]
[+] EMBL BM038087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAAC C ATTGGTTCAGAAaaaaaaa                                                                                                                                                                                                                                        ]




>consensus_12446#0
CCGCACTCTCACCCGCTTCCTCTCCAAGCCCCCTTTCAAGCCCAAGCCCACCAACCCCTC
GCCGCCGCCGCCCCCGCCGCCGCCGGGGATCCAGCCTCCTCCACCGGCGCTGCCCGGCAT
GCCGCACGGACGCCCGCCGCCGCCGTTCCCGGGAGGGCGGGACGCGTTCCCGCAGGCGGC
GTCGACGGTGGTCCCGGACCCGGCCAGGTTCTTCGCGCCGGCGCTGCTCTCGTCGCCGCT
CCCCACCAACTCCTTCTTCCAGAACTTCGTGCTCAAGAACGGCGACCAGCCGGAGTACAT
CCACCCGTACTCGGTCCGCTCCGCCGCCGCCGCGCTCACCCTGTGCTACCCGGCGCGGAA
CCACTCCCCGTCGTTCGTCATCCAGACGTTCGTCGAGGACCTGACCGTCTCCGCGGCGTC
CGACGCCGCGGCGGCCGCGGCGGGGCAGAGGCACCGGGTCGCCGCGTTCGACGACCTCTC
AGTCACCCTCGACGTCTCGCCGTCGCTCAGGGCGTTCCTCGTCAGGGGCTGCCCCTTTGT
CACCGTCGCCACCGCCGACGCCGCGGGCCCCGTCGACATCTCCGTCGCGTCCGTCCACGC
CTTCATCGAGGTGGCCTCCTGCGACGACGCGCTCACCAAGTGGCGGCTCCGGATGAACAG
CGGCCAGACCTTCCTCCTCTACGCGTCCGCGCCGATCCGCCTCGCGCAGTCCAGCGTCAC
GCAGCTGTCGGCCCCCGGCTTCTCCGGCGTCATCCGGGTCGCCTACCTGCCGGACCCGTC
CATGGAGGCGGTTCTTGATCAGTACAGCCGGTGCTTCCCCACCGCCGGCGAGGCCTCGCT
GAACCGCCCCTTCTGCGTCGAGTACACCTGGCGCAAGCAAGGGTGGGGAGACCTCCTCAT
GCTCGCCCATCCCCTCCACCTCCGCCTCCTCTCCGAGGATTGCTGCGTCCGGGTGCTCGA
CGATTTCAGGTACCGGAGTATCGACGGCGACATGGTCGGCGTCGTCGGCGATTCTTGGGT
TCTCCGGACCGATCCGGTGTCCCCCACATGGCACTCGATGCGGGGCATCAGCGACGACGG
GGTGGGCGAGGTCGCCGCCGCGCTGCGCAAGGATGTGGATGCCCTTGCTTCCAGCTCCAT
CACGACCACCTCCTCCTACTTCTACGGCAAGGCGATCGCCAGGGCGGCGAGGTTCGCCGT
AATCGCCGAGGAGGTCGGCTGCCCTGACGTCATCCCGGCGGTGCAGCGATTCTTGAAGGC
CACCGTCACGCCATGGCTGGATGGCAGCTTCCAGGGCAATGGATTCCTCTATGAACCCAA
ATGGGGTGGCCTTGTCACATTGCAGGGATCCAAGGACACCGGCGCCGATTTCGGCTTCGG
CATTTACAATGATCACCACTACCATTTGGGGTACTTCTTGTACGCCATTGCTGTGCTTGC
CAAGATTGATCCCTCCTGGGGGAGGAAGTACATGCCCCAGGCCTACTCCATGGTTGCAGA
TTTCATGACATTGTCGCGGAAACACGGCGCAAGCTACACAAGATTGAGGATGTTTGATCT
CTGGAAGCTCCATTCCTGGGCCGGAGGTTTGACAGAATTTGCGGATGGGCGCAACCAGGA
GAGCACTAGCGAGGCCGTGAATGCGTACTACTCCGCTGCGCTTCTCGGATTGAGCTATGG
GGATACTCACCTTGTCTCCATCGGCGCGACATTGACCGCATTGGAGATGCTTGCAGCACA
GACATGGTGGCATGTCCGTGAAGGTGACACCATCTACGAAGACGATTTCACCGGCAACAA
CCGTGTCGTCGGCGTCCTGTGGGCGAACAAGAGGGACAGTGGCCTCTGGTTCGCTCCACC
GGAGTGGAAGGAATGCAGGCTGGGGATCCAGCTGCTGCCTGTCCTGCCGATCAGCGAGGC
GCTGTTCCCGGACATCAGCTTCGTCAAGGAGCTGGTGGACTGGACAATGCCGGCATTGTC
AAGGGAAGGGGTCGGAGAAGGGTGGAAGGGCTTCGTGTACGCCCTGGAGGGGATCTACAA
TAAGGAATCGGCATTGCAGAAGACGAGGGCGCTGACGGGGCACGACGATGGCAACTCCCT
GACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTT
CTCCAGGTGCTGCTGGTACCGCCAGTATTGCCATTGATGGGGGCTGAAATGATCGCAGCA
GAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAA
GGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACAT
CAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTC
ATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAGTTTTGAGTTGCCTATGT
TTTCTTTTTTTTTTCTCTCTCTTTGTCTCGGTTTTGAGAGTGAGATTTCTCCTGCTGATA
GCCTGCTAGCAGGTGTGGCCCATTCTCAATCTCAGGGCTCAGGCCAGTTTATTTGGAATG
CAACTTACACAAAGCTTCCCCCTTAAACCACTAGAATATACTTCCTCCGTTTTATAATGT
ATAATGTATGATGTTGTTGACTTTTTAATCAACATTTAAT

consensusID : consensus_12446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 414
fasta sequence

                              [ACGGGGCACGACGATGGCAACTCCCTGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCATTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAAAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCANAAGTTTTGAGTTGCCTATGTTTTCTTTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU165963             [ACGGGGCACGACGATGGCAACTCCCTGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCATTGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAAAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCANAAGTTTTGAGTTGCCTATGTTTTCTTTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU101923             [                                                                                                                                                                              TGAAGATCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACNCACACANCTTTTNCACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAGTTTTGAGTTGCCTATGTTTTCTTTAAAAAAAAAAAAAAAAAAAAA]




>consensus_12446#1
ACGGGGCACGACGATGGCAACTCCCTGACCAACCTTCTCTGGTGGCTGCACAGCCGCGGC
ACCGCCGATGATGGCGTCGTCGGGTTCTCCAGGTGCTGCTGGTACCGCCAGTATTGCCAT
TGATGGGGGCTGAAATGATCGCAGCAGAGATTGCCCGAGATGATGCGTTGTTGCTGAAGA
TCAGGTTGTGTGGGTGATATGCCGAAGGATACAGATTATTATAAAGTGGGCTGTTCAGTT
TCAGAGTTTCCGTGTGATTCAAACATCAGGATGCTACACACACATCTTTTACACTTTGTT
GTTTCAATAAAAAGTAGTCAAAAGTCATGGTATGTTGATATTTTACATGGAACGCAATTG
GTTCANAAGTTTTGAGTTGCCTATGTTTTCTTTAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12446#0      CCGCACTCTCACCCGCTTCCTCTCCAAGCCCCCTTTCAAGCCCAAGCCCACCAACCCCTC 60
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GCCGCCGCCGCCCCCGCCGCCGCCGGGGATCCAGCCTCCTCCACCGGCGCTGCCCGGCAT 120
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GCCGCACGGACGCCCGCCGCCGCCGTTCCCGGGAGGGCGGGACGCGTTCCCGCAGGCGGC 180
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GTCGACGGTGGTCCCGGACCCGGCCAGGTTCTTCGCGCCGGCGCTGCTCTCGTCGCCGCT 240
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CCCCACCAACTCCTTCTTCCAGAACTTCGTGCTCAAGAACGGCGACCAGCCGGAGTACAT 300
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CCACCCGTACTCGGTCCGCTCCGCCGCCGCCGCGCTCACCCTGTGCTACCCGGCGCGGAA 360
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CCACTCCCCGTCGTTCGTCATCCAGACGTTCGTCGAGGACCTGACCGTCTCCGCGGCGTC 420
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CGACGCCGCGGCGGCCGCGGCGGGGCAGAGGCACCGGGTCGCCGCGTTCGACGACCTCTC 480
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      AGTCACCCTCGACGTCTCGCCGTCGCTCAGGGCGTTCCTCGTCAGGGGCTGCCCCTTTGT 540
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CACCGTCGCCACCGCCGACGCCGCGGGCCCCGTCGACATCTCCGTCGCGTCCGTCCACGC 600
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CTTCATCGAGGTGGCCTCCTGCGACGACGCGCTCACCAAGTGGCGGCTCCGGATGAACAG 660
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CGGCCAGACCTTCCTCCTCTACGCGTCCGCGCCGATCCGCCTCGCGCAGTCCAGCGTCAC 720
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GCAGCTGTCGGCCCCCGGCTTCTCCGGCGTCATCCGGGTCGCCTACCTGCCGGACCCGTC 780
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CATGGAGGCGGTTCTTGATCAGTACAGCCGGTGCTTCCCCACCGCCGGCGAGGCCTCGCT 840
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GAACCGCCCCTTCTGCGTCGAGTACACCTGGCGCAAGCAAGGGTGGGGAGACCTCCTCAT 900
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GCTCGCCCATCCCCTCCACCTCCGCCTCCTCTCCGAGGATTGCTGCGTCCGGGTGCTCGA 960
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CGATTTCAGGTACCGGAGTATCGACGGCGACATGGTCGGCGTCGTCGGCGATTCTTGGGT 1020
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      TCTCCGGACCGATCCGGTGTCCCCCACATGGCACTCGATGCGGGGCATCAGCGACGACGG 1080
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GGTGGGCGAGGTCGCCGCCGCGCTGCGCAAGGATGTGGATGCCCTTGCTTCCAGCTCCAT 1140
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CACGACCACCTCCTCCTACTTCTACGGCAAGGCGATCGCCAGGGCGGCGAGGTTCGCCGT 1200
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      AATCGCCGAGGAGGTCGGCTGCCCTGACGTCATCCCGGCGGTGCAGCGATTCTTGAAGGC 1260
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CACCGTCACGCCATGGCTGGATGGCAGCTTCCAGGGCAATGGATTCCTCTATGAACCCAA 1320
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      ATGGGGTGGCCTTGTCACATTGCAGGGATCCAAGGACACCGGCGCCGATTTCGGCTTCGG 1380
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CATTTACAATGATCACCACTACCATTTGGGGTACTTCTTGTACGCCATTGCTGTGCTTGC 1440
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CAAGATTGATCCCTCCTGGGGGAGGAAGTACATGCCCCAGGCCTACTCCATGGTTGCAGA 1500
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      TTTCATGACATTGTCGCGGAAACACGGCGCAAGCTACACAAGATTGAGGATGTTTGATCT 1560
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CTGGAAGCTCCATTCCTGGGCCGGAGGTTTGACAGAATTTGCGGATGGGCGCAACCAGGA 1620
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GAGCACTAGCGAGGCCGTGAATGCGTACTACTCCGCTGCGCTTCTCGGATTGAGCTATGG 1680
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GGATACTCACCTTGTCTCCATCGGCGCGACATTGACCGCATTGGAGATGCTTGCAGCACA 1740
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GACATGGTGGCATGTCCGTGAAGGTGACACCATCTACGAAGACGATTTCACCGGCAACAA 1800
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CCGTGTCGTCGGCGTCCTGTGGGCGAACAAGAGGGACAGTGGCCTCTGGTTCGCTCCACC 1860
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GGAGTGGAAGGAATGCAGGCTGGGGATCCAGCTGCTGCCTGTCCTGCCGATCAGCGAGGC 1920
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      GCTGTTCCCGGACATCAGCTTCGTCAAGGAGCTGGTGGACTGGACAATGCCGGCATTGTC 1980
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      AAGGGAAGGGGTCGGAGAAGGGTGGAAGGGCTTCGTGTACGCCCTGGAGGGGATCTACAA 2040
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      TAAGGAATCGGCATTGCAGAAGACGAGGGCGCTGACGGGGCACGACGATGGCAACTCCCT 2100
consensus_12446#1      ----------------------------------ACGGGGCACGACGATGGCAACTCCCT 26
                                                         **************************

consensus_12446#0      GACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTT 2160
consensus_12446#1      GACCAACCTTCTCTGGTGGCTGCACAGCCGCGGCACCGCCGATGATGGCGTCGTCGGGTT 86
                       ************************************************************

consensus_12446#0      CTCCAGGTGCTGCTGGTACCGCCAGTATTGCCATTGATGGGGGCTGAAATGATCGCAGCA 2220
consensus_12446#1      CTCCAGGTGCTGCTGGTACCGCCAGTATTGCCATTGATGGGGGCTGAAATGATCGCAGCA 146
                       ************************************************************

consensus_12446#0      GAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAA 2280
consensus_12446#1      GAGATTGCCCGAGATGATGCGTTGTTGCTGAAGATCAGGTTGTGTGGGTGATATGCCGAA 206
                       ************************************************************

consensus_12446#0      GGATACAGATTATTATAGAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACAT 2340
consensus_12446#1      GGATACAGATTATTATAAAGTGGGCTGTTCAGTTTCAGAGTTTCCGTGTGATTCAAACAT 266
                       ***************** ******************************************

consensus_12446#0      CAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTC 2400
consensus_12446#1      CAGGATGCTACACACACATCTTTTACACTTTGTTGTTTCAATAAAAAGTAGTCAAAAGTC 326
                       ************************************************************

consensus_12446#0      ATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCAGAAGTTTTGAGTTGCCTATGT 2460
consensus_12446#1      ATGGTATGTTGATATTTTACATGGAACGCAATTGGTTCANAAGTTTTGAGTTGCCTATGT 386
                       *************************************** ********************

consensus_12446#0      TTTCTTTTTTTTTTCTCTCTCTTTGTCTCGGTTTTGAGAGTGAGATTTCTCCTGCTGATA 2520
consensus_12446#1      TTTCTTTAAAAAAAAAAAAAAAAAAAAA-------------------------------- 414
                       *******                                                     

consensus_12446#0      GCCTGCTAGCAGGTGTGGCCCATTCTCAATCTCAGGGCTCAGGCCAGTTTATTTGGAATG 2580
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      CAACTTACACAAAGCTTCCCCCTTAAACCACTAGAATATACTTCCTCCGTTTTATAATGT 2640
consensus_12446#1      ------------------------------------------------------------
                                                                                   

consensus_12446#0      ATAATGTATGATGTTGTTGACTTTTTAATCAACATTTAAT 2680
consensus_12446#1      ----------------------------------------