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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 810 fasta sequence
[GTAGCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGC-TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG-ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG-TTCGTGC-TCGACGTCCC-TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG-G-GAGGAGGAGGAAGGGGAGTGCAAGTACA-TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCGGCCGCCGCCGGAGAAGAAGACCAAGTCCGTCCAGGTCACCATCGCCTGAATCATAGCGTAGTGCTCGGGTAATGGCAGCGTGGCGGTAGTAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACGATTCCAAATCGAT]
[+] EMBL AK119261 [GTAGCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCAAGTACA TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCGGCCGCCGCCGGAGAAGAAGACCAAGTCCGTCCAGGTCACCATCGCCTGAATCATAGCGTAGTGCTCGGGTAATGGCAGCGTGGCGGTAGTAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACGATTCCAAATCGAT]
[+] EMBL AU093373 [ ccgGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCAAGTACA TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCA ]
[+] EMBL OSC106 [ GCAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGNTCGG GGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGCTTCGACGTCCC TGGGCTTTTCAAGTCCGACATTCAGGTGACGNTTNAGG ]
[+] EMBL OSC3911 [ CAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTNCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGNTCGG GGTCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGGGTA GAGGAGGAGGAAGGGGAGTTCAAGTACATTCCGCt ]
[+] EMBL AU063679 [ CAAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGTC NCGNGGACCGCCGNTCGG GGGCGTACCACGCGCACCACGNCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGNCAGTGGACATCATGGAGACCCCCGGCGAGTACGCGTTTCGTGC TCGACGTCCCTTGGNCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGTTGA ]
[+] EMBL AU093374 [ CAAAGCCCAAGTTGGTAGCCATGACGGAGCTTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGAAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCAAGTACA TCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCA ]
[+] EMBL AU182085 [ AAAGCCCAAGTTGGTAGCCATGACGGAGC TGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCG G GAGGAGGAGGAAGGGGAGTGCA ]
[+] EMBL C29078 [ CGACACCGCCGTGACCAGCCTCCTNCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCGCCGGGGACCGCCGCTCGG GGNCG ACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCANTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCG TTCGTGC TCGACGTCCC TGGNCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGGAGGACAGGGTNCTNGTGATGAAGAGCAGCAATNGCGCCGGGAACGGGAAGCGGAA CG GNGAAGAGGAGGAAG ]
consensusID : consensus_12447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence
[GCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGGCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGCGTACAAAATCCGAGCCCTGAATTTCCTCGATTCGCGTTCGAATCAGCGAGTTAGTTTGGGCGCGATTCTTTCTTGTCTGCGCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCGGGAGGAGGAGGAAGGGGAGTGCAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACG]
[+] EMBL AK063602 [GCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGGCTCGGCGCCGCCGCCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGCACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGTACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGCGTACAAAATCCGAGCCCTGAATTTCCTCGATTCGCGTTCGAATCAGCGAGTTAGTTTGGGCGCGATTCTTTCTTGTCTGCGCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATGAAGAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCGGGAGGAGGAGGAAGGGGAGTGCAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTGCTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGTGACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTATGTCAAATCTCGTTCGTGAACG]
consensusID : consensus_12447#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence
[AGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGACNCGGGGACCGNCGTTCGNGGTCGTACCACGCGNACCACGNCGCGNATGGACACGGCCAGNACCGCATCAGTGGAATCGGTGGTGGCGNGTCAGTGGACATCA]
[+] EMBL C29132 [AGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCGACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGACNCGGGGACCGNCGTTCGNGGTCGTACCACGCGNACCACGNCGCGNATGGACACGGCCAGNACCGCATCAGTGGAATCGGTGGTGGCGNGTCAGTGGACATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12447#0 GTAGCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCG 60
consensus_12447#2 ----------------------AGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCG 38
consensus_12447#1 ---GCAAGAAGGAGAGCGAGAGAGCAAAGCCCAAGTTGGTAGCCATGACGGAGCTGTTCG 57
**************************************
consensus_12447#0 ACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGCCG 120
consensus_12447#2 ACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGCCTCGGCGCCGACN 98
consensus_12447#1 ACACCGCCGTGACCAGCCTCCTCCACCTGCCGGAGGTGCTCGACCGGCTCGGCGCCGCCG 117
********************************************** ********** *
consensus_12447#0 CCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGC 180
consensus_12447#2 C-GGGGACCGNCGTTCGNGGTCGTACCACGCGNACCACGNCGCGNATGGACACGGCCAGN 157
consensus_12447#1 CCGGGGACCGCCGCTCGGCGGGCGACCACGCGCACCACGCCGCGCATGGACACGGCCAGC 177
* ******** ** *** * ******** ****** **** **************
consensus_12447#0 ACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGT 240
consensus_12447#2 ACCGCATCAGTGGAATCGGTGGTGGCGNGTCAGTGGACATCA------------------ 199
consensus_12447#1 ACCGCATCAGTGGAATCGGTGGTGGCGCGCCAGTGGACATCATGGAGACCCCCGGCGAGT 237
*************************** * ************
consensus_12447#0 ACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGACGCTGGAGG 300
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 ACGCGTTCGTGCTCGACGTCCCTGGCCTCTCCAAGTCCGACATCCAGGTGC--------- 288
consensus_12447#0 AGGACAGGGTGCTGGTGATGAAGAGCAGCAATG-GCGCCGGGAACGGGAAGCGGAAGCGG 359
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 -GTACAAAATCCGAGCCCTGAATTTCCTCGATTCGCGTTCGAATCAGCGAGTT--AGTTT 345
consensus_12447#0 GAGGAGGAGGAAGGGGAGTGCAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCG 419
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 GGGCGCGATTCTTTCTTGTCTGCGCAGGTGACGCTGGAGGAGGACAGGGTGCTGGTGATG 405
consensus_12447#0 TTCGCGCGCAAGTTCCGCCTCCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGA-TG 478
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 AA-GAGCAGCAATGGCGCCGGGAACGGGAAGCGGAAGCGGGAGGAGGAGGAAGGGGAGTG 464
consensus_12447#0 CGAGAACGGGGTGCTCACGGTCACCGTCAAGAAGCGGCCGCCGCCGGAGAAGAAGACCAA 538
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 CAAGTACATCCGCCTCGAGCGCCGCGCGTCGCCGAGGGCGTTCGCGCGCAAGTTCCGCCT 524
consensus_12447#0 GTCCGTCCAGGTCACCATCGCCTGAATCATAGCGTAGTGCTCGGGTAATGGCAGCGTGGC 598
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 CCCGGAGGACGCGGACACCGGCGGCATCTCGGCGCGATGCGAGAACGGGGTGCTCACGGT 584
consensus_12447#0 GGTAGT--AGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTG 656
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 CACCGTCAAGAAGCTGGAAATGGTTGCCGAGAATGGTTGGAGCAGTAGAATGTGTTTGTG 644
consensus_12447#0 CTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGT 716
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 CTCTGTTCGTGTTTCGGTAGTACAAGTTGTCGCTGATCTGCTATGTATAAACGCTGGTGT 704
consensus_12447#0 GACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTAT 776
consensus_12447#2 ------------------------------------------------------------
consensus_12447#1 GACCGTGAAGATGAAGACTACGGAAGTAGCTGTTCTTTTGTGTAGGATCAAGCAAATTAT 764
consensus_12447#0 GTCAAATCTCGTTCGTGAACGATTCCAAATCGAT 810
consensus_12447#2 ----------------------------------
consensus_12447#1 GTCAAATCTCGTTCGTGAACG------------- 785
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||