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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1179 fasta sequence
[GATCTTGAATTCTTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGTNGGCGCCGGCCGCGCCGNNGNCNGNANCAACC-GGCGGCACCGGCGACGCCAGCGG-GCCCGCNCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAACCAGCTGAACAGCTCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAACGCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACTCGCTGGTGCAGTACCACGTGCTGTCCACGCTGATCCCCATGTCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCAGCAACTCGCCGGGGCAGTACCCGCTCAACGTGACGGCGGAGGGGCAGCAGGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGGCAACGCGCTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCCATCTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGGAAGACGCCGGCCACGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG-ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGTCATATCATTACCATTATTATTGTAATTGCTAGGAGTATGTAATGTATCATTGGATTCCCATTTTTCTGTAATGTAATGGTTTTAAATAAAAAAAAAAAAAAAA]
[+] EMBL OSR32861A [GATCTTGAATTCTTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGNGTC ]
[+] EMBL OSS2687A [ TTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGTNGGCGCCGGCCGCGCCGNNGNCTGTATCAACCTGGNGGC ]
[+] EMBL OSS2682A [ TTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGGNGGCGCCGGCCGCGCCGNGGNCNGNANCAACC GGCGGCACCGGCGACGCCAGCGG GCCCGCNCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGNTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAACCAGCTt ]
[+] EMBL OSS2933A [ ATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGTNGGCG CGGCCGCGCNGNTGNCNNNA CAACC GGCGGCACCGGCNACGCCAGCGG GCCCGCCCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCG ]
[+] EMBL AU174266 [ ATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGGCGGCGCCGGCCGCGCCGGCGCCGGCGAC ACC GGCGGCACCGGCGACGCCAGCGGCGCCCGCGCCGGCGTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAACCAGCTGAACAGCTCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAACGCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACT ]
[+] EMBL AK108308 [ GCTGAACAGCTCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAACGCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACTCGCTGGTGCAGTACCACGTGCTGTCCACGCTGATCCCCATGTCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCAGCAACTCGCCGGGGCAGTACCCGCTCAACGTGACGGCGGAGGGGCAGCAGGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGGCAACGCGCTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCCATCTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGGAAGACGCCGGCCACGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGTCATATCATTACCA ]
[+] EMBL AU174267 [ GCGCTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCCATTTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGGAAGACGCCGGCCACGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGaaaaaa ]
[+] EMBL AU174273 [ GACGAAAAAGAAGGGGAANACGCCGGCCNCGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTANNNNCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGaaaaaa ]
[+] EMBL AU174062 [ CGGACGCGACGACCCCGTCTCTCCCGGCGGCGAGGGTGNCGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACGCATGAGGTTGATGCCAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGGTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCNTTTTTGGTTGAATTATTGCTCGTCATATCATTACCNTTATTATTGTAATTGCTAGGAGTATGTAATGTATCATTGGATTCCCATTTTTCTGTAATGTAATGGTTTTAAATAAAAAAAAAAAAAAAA]
consensusID : consensus_12454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1095 fasta sequence
[CACTAAACTGCTCACTGCATTTGCATGCACGTGGCCAAGAAGAGTTTGGCATCCATGGCGGCTTCGGCGACGACGACCATCCTCGTGGCGGCGATGTTGGTGGTGATGGCGGTGGAGTCTCCGGTGGCGAACGGGCAGGCGGCGGCGGCTGCGCCGGCGCCGGCGCCGGCGGCGCCGAAGACGATCACGGCGATCCTGACCAAGGCCGGTCAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAACCAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAACGCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCGCTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACCGCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACGCTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCGCTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCGTCGCCGGCGGACAAGGCCAAGAAGAAGGCCGGCCCCGTCGGCGTGGCCGACGCGCCGGCGGCCGACACGGCTGCCGGGACGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGCGGCGCGGGGCACGGTGCGGCGGGGCTTGGTCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGACAGTAAAGGAGAATGTTGGAGATTGCCAATTCACCATGGGATTTTTTTTTCTTTTAATTTTGTGGAAAGGTGTTAAAATTGTTTTGTTGTTTTGGTTTTTCTTGTTCTTTTTGTATGATTTGGTAGGATTTTGTTTTGTCCGTGTCCTATGTTGATCTTTTAGAGTTTTTCACTGTGTGTTGTATGTCTTTTCGTGGTTGTTATATATGTAATAAGAAGTGTTTGTATATTGTGGTATCTAAT]
[+] EMBL AK105598 [CACTAAACTGCTCACTGCATTTGCATGCACGTGGCCAAGAAGAGTTTGGCATCCATGGCGGCTTCGGCGACGACGACCATCCTCGTGGCGGCGATGTTGGTGGTGATGGCGGTGGAGTCTCCGGTGGCGAACGGGCAGGCGGCGGCGGCTGCGCCGGCGCCGGCGCCGGCGGCGCCGAAGACGATCACGGCGATCCTGACCAAGGCCGGTCAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAACCAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAACGCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCGCTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACCGCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACGCTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCGCTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCGTCGCCGGCGGACAAGGCCAAGAAGAAGGCCGGCCCCGTCGGCGTGGCCGACGCGCCGGCGGCCGACACGGCTGCCGGGACGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGCGGCGCGGGGCACGGTGCGGCGGGGCTTGGTCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGACAGTAAAGGAGAATGTTGGAGATTGCCAATTCACCATGGGATTTTTTTTTCTTTTAATTTTGTGGAAAGGTGTTAAAATTGTTTTGTTGTTTTGGTTTTTCTTGTTCTTTTTGTATGATTTGGTAGGATTTTGTTTTGTCCGTGTCCTATGTTGATCTTTTAGAGTTTTTCACTGTGTGTTGTATGTCTTTTCGTGGTTGTTATATATGTAATAAGAAGTGTTTGTATATTGTGGTATCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12454#0 GATCTTGAATTCTTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCAC 60
consensus_12454#1 ------------------------------------------------------------
consensus_12454#0 AACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCC 120
consensus_12454#1 -------------CACTAAACTGCT-------CACTGCATTTGCATGCACGTGGCCAAGA 40
*** ** * * ***** **** *** ** *
consensus_12454#0 ATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGC 180
consensus_12454#1 AGAGTTTGGCATCCATGGCGGCTT-CGGCGACGACGACCATCCTCGTGGCGGCGATGTTG 99
* * * * * * *** * * * * * ***** * * **** *
consensus_12454#0 CCGACGTNGGCGCCGGCCGCGCCGNNGNCNGNANCAACCGGCGGCACCGGCGACGCCAGC 240
consensus_12454#1 GTGGTGATGGCGGTGGAGTCTCCGGTGGCG-AACGGGCAGGCGGCGGCGGCTGCGCCGGC 158
* * **** ** * *** * * * * ****** **** **** **
consensus_12454#0 GGGCCCGCNCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGG 300
consensus_12454#1 --GCCGGCGCCGGCGGCGCCGAAGACGA------TCACGGCGATCCTGACCAAGGCCGGT 210
*** ** ***** ** ********* ****** * * ** **********
consensus_12454#0 CAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAAC 360
consensus_12454#1 CAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAAC 270
******* ** * ** ** *** *** *** ** ** * ********* *****
consensus_12454#0 CAGCTGAACAGC---------TCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAAC 411
consensus_12454#1 CAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAAC 330
*** * ** * ** * ****** ** ************ ********
consensus_12454#0 GCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACTCG 471
consensus_12454#1 GCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCG 390
****** ** ******** ******* ****** *** **************** ***
consensus_12454#0 CTGGTGCAGTACCACGTGCTGTCCACGCTGATCCCCATGTCGCAGTTCGACACCGTCAGC 531
consensus_12454#1 CTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGC 450
********** ****** ***** ***** ******** ********************
consensus_12454#0 AACCCGCTCCGGACGCAGGCCGGCAGCAACTCGCCGGGGCAGTACCCGCTCAACGTGACG 591
consensus_12454#1 AACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACC 510
************************ * * * * ** **************** **
consensus_12454#0 GCGGAGGGGCAGCAGGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGGCAACGCG 651
consensus_12454#1 GCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACG 570
** ***** * ************************************* **** **
consensus_12454#0 CTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCC 711
consensus_12454#1 CTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCG 630
****** ******** ********* ******** ************** *** ***
consensus_12454#0 ATCTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGG 771
consensus_12454#1 CTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCG---TCGCCGGCGGACAAGGCCAAGAAG 687
***** ** **** * ********* ****** ********* *** *** *
consensus_12454#0 AAGACGCCGGCCACGTCGG--TCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACG 829
consensus_12454#1 AAG--GCCGGCCCCGTCGGCGTGGCCGACGCGCC---GGCGGCCGACACGGCTGCCGGGA 742
*** ******* ****** * *********** *** ****** ** * * *
consensus_12454#0 CGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGG---GGTGG 886
consensus_12454#1 CGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGC-GGCGCGGGGCACGGTGCGGCGG 801
******* ** * * *** ***** ** * **** ** ** ** *** ** **
consensus_12454#0 TTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG--ATGAGGTTGATGACAAGTTTG 944
consensus_12454#1 GGCTTGG-TCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGACAG---TA 857
**** * **** * * * * ****** ** ** ** ***** *
consensus_12454#0 AGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCT 1004
consensus_12454#1 AAGGAGAATGTTGGAGATTGCCAATTCACCATGGGATTTTTTTTTCTTTTAATTTTGTGG 917
* **** ** * * * **** **** * ** **** ** * *
consensus_12454#0 TAATTTTTTTTG-TTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATT-TTTGGTT 1062
consensus_12454#1 AAAGGTGTTAAAATTGTTTTGTTGTTTTGGTTTTTCTTGTTCTTTTTGTATGATTTGGTA 977
** * ** ***** * * * **** * * * * * ** ******
consensus_12454#0 GAATTATTGCTCGTCATATCATTACCATTAT-TATTGTAATTGCTAGGAGTATGTAATGT 1121
consensus_12454#1 GGATTTTGTTTTGTCCGTGTCCTATGTTGATCTTTTAGAGTTTTTCACTGTGTGTTGTAT 1037
* *** * * *** ** * ** * ** * ** * ** *** * *
consensus_12454#0 ATCATTGGATTCCCATTTT-TCTGTAATGTAATGGTTTTAAATAAAAAAAAAAAAAAAA 1179
consensus_12454#1 GTCTTTTCGTGGTTGTTATATATGTAATAAGAAGTGTTTGTATATTGTGGTATCTAAT- 1095
** ** * ** * * ****** * * *** *** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||