cluster # 12474

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Oryza sativa
cluster # 12474 cluster # 12474 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12474#0 length = 2143 sequences # 8

consensus_12474#1 length = 725 sequences # 1
consensus_12474#2 length = 217 sequences # 1

consensusID : consensus_12474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2143
fasta sequence

                              [GGCGCGGCCACCTCACAAGGGAGCATCGGCACAGCCAACCGCAGCGCAGCGGCAGCCAAAAACCCACCGTTTCCAATTCCTCGCCCGATTTTGAACCGCTCTCCGCCCGACCGAACCTGTTCCACTCCGCCGAGCGGAAAAAAAAAACTTCTTCGCCGTCTCGAAGGAAATTTATTGGGAAGAAACCGTTGCGGGAGGCGGGCAAACTGAAGCGGCAGCGGCAGCGGCAGAG-GCGATGGAGCGGTACCATCCCTCCGAGGTGTATGAGCTCTTCGTGCGGCACATGAACACCCCGAGGGTGGTGGTGGACAGCGGGGTGTGCGCGACAGCGACGCTGGTGCAGGTGCACAGCGCGCGGAAGCACGGGATGCTGCTGGAGGCGGTGGCGGCGCTGTCGGAGCACGGGGTGTGCGTCCGCAAGGGGTACATCTCGTCCGACGACGGGCGGTGGTTCATGGACGTGTTCCACGTCACGGACGCCGCGGGGAGGAAGGTGGCCGACGCGGACGCGCTACTGGCGCGCCTCGAGTCGTCGCTGTCCGCGGAAGCATTGCCGCGGGCGGCGGCGGGCGGCCCCGCCGCGGAGGGGCTCACCCTGCTCGAGCTCGTCGGCGCCGACCGCCCGGGCCTCCTCTCGGAGGTGTTCGCCGTGCTGCACGACCTCCGGTGTAACACCGTCGAGGCCAGGGCGTGGACGCACGGCGGCCGCGTCGCAGCGCTGGTGTTCGTCCGCGACGAGGAGACGGGCGCGCCGATCGACGACGCGGCCCGGGTCAGGCGCATCGAGTCCCGCCTCAGGCACGTCCTCCGCGGCGGCGCGCGCTGCGCGAGGACGGTCCTGGCTGATCCGTCGGCGGCCGGCAACCTGGACCGGAGGCTCCACCAGCTGCTGAACGAGGACGGGGAGGCCGACAGCCGCGGCGCCGCGCCGATGACGGCGGTGGCGGTGCAGGATTGGGGGGAGAGAGGGTACTCGGTGGTGACCGTGAGCTGCCGCGACAGGCCGAAGCTGCTCTTCGACGTGGTCTGCACCTTGACGGACTTGGATTACGTGGTGTACCACGGCACGTTCGACACCGACGGCGATCACGCGCAGCAGGAGTTCTACATACGGCGTTCGGACGGGCGGCCAATCAGCTCGGAGGCCGAGAGGCAGCATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATCCGAGGTACGTGATGGAGTAGCAGTAGTATCTCCTTTGCTTTCCCTCCATGCCACGCCACCGATCGCGGCCGTGCTGTGCTGTGCCCACTTCGCAGCACCAAGCCGCGAAGTCACTTTCGTTCTTGCCCGACTTTCCACTACACCCCCCATGTGTTCGGCCGAAATCCCAGCCAGCGCGCGCGGTGCCCGTCCGTCTGACGCGATCTTTTTTCTGTGTGCAGGGCGTGCGGCTCGAGCTCCGCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCCTCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACGTCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGATCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAGGCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGAAGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGATCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTAGATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGAAAAAGGCTGCTTGTCGGTAATTAACAGCTTGGAGGTTTAAAGGGACGCGTTGGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTATATAAGTGCTACTTAATGATGTTTAACTAAAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB640635             [GGCGCGGCCACCTCACAAGGGAGCATCGGCACAGCCAACCGCAGCGCAGCGGCAGCCAAAAACCCACCGTTTCCAATTCCTCGCCCGATTTTGAACCGCTCTCCGCCCGACCGAACCTGTTCCACTCCGCCGAGCGGAAAAAAAAAACTTCTTCGCCGTCTCGAAGGAAATTTATTGGGAAGAAACCGTTGCGGGAGGCGGGCAAACTGAAGCGGCAGCGGCAGCGGCAGAG GCGATGGAGCGGTACCATCCCTCCGAGGTGTATGAGCTCTTCGTGCGGCACATGAACACCCCGAGGGTGGTGGTGGACAGCGGGGTGTGCGCGACAGCGACGCTGGTGCAGGTGCACAGCGCGCGGAAGCACGGGATGCTGCTGGAGGCGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB683782             [                                                                                                                                                                                                                                  GCAGAGCGCGATGGAGCGGTACCATCCCTCCGAGGTGTATGAGCTCTTCGTGCGGCACATGAACACCCCGAGGGTGGTGGTGGACAGCGGGGTGTGCGCGACGGCGACGCTGGTGCAGGTGCACAGCGCGCGGAAGCACGGGATGCTGCTGGAGGCGGTGGCGGCGCTGTCGGAGCACGGGGTGTGCGTCCGCAAGGGGTACATCTCGTCCGACGACGGGCGGTGGTTCATGGACGTGTTCCACGTCACGGACGCCGCGGGGAGGAAGGTGGCCGACGCGGACGCGCTACTGGCGCGCCTCGAGTCGTCGCTGTCCGCGGAAGCATTGCCGCGGGCGGCGGCGGGCGGCCCCGCCGCGGAGGGGCTCACCCTGCTCGAGCTCGTCGGCGCCGACCGCCCGGGCCTCCTTTCGGAGGTGTTCGCCGTGCTGCACGACCTCCGGTGTAACACCGTCGAGGCCAGGGCGTGGACGCACGGCGGCCGCGTCGCAGCGCTGGTGTTCGTCCGCGACGAGGAGACGGGCGCGCCGATCGACGACGCGGCCCGGGTCAGGCGCATCGAGTCCCGCCTCATGCACGTCCTCCGCGGCGGCGCGCGCTGCGCGAGGACGGTCCTGGCTGATCCGTCGGCGGCCGGAAACCTGGACCGGAGGCTCCACCAGCTGCTGAAAGAGGACGGTGAGGCCGACAGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB618504             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCTCACCCTGCTCGAGCTCGTCGGCGCCGACCGCCCGGGCCTCCTCTCGGAGGTGTTCGCCGTGCTGCACGACCTCCGGTGTAACACCGTCGAGGCCAGGGCGTGGACGCACGGCGGCCGCGTCGCAGCGCTGGTGTTCGTCCGCGACGAGGAGACGGGCGCGCCGATCGACGACGCGGCCCGGGTCAGGCGCATCGAGTCCCGCCTCAGGCACGTCCTCCGCGGCGGCGCGCGCTGCGCGAGGACGGTCCTGGCTGATCCGTCGGCGGCCGGCAACCTGGACCGGAGGCTCCACCAGCTGCTGAACGAGGACGGGGAGGCCGACAGCCGCGGCGCCGCGCCGATGACGGCGGTGGCGGTGCAGGATTGGGGGGAGAGAGGGTACTCGGTGGTGACCGTGAGCTGCCGCGACAGGCCGAAGCTGCTCTTCGACGTGGTCTGCACCTTGACGGACTTGGATTACGTGGTGTACCACGGCACGTTCGACACCGACGGCGATCACGCGCAGCAGGAGTTCTACATACGGCGTTCGGACGGGCGGCCAATCAGCTCGGAGGCCGAGAGGCAGCATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATCCGAGGTACGTGATGGAGTAGCAGTAGTATCTCCTTTGCTTTCCCTCCATGCCACGCCACCGATCGCGGCCGTGCTGTGCTGTGCCCACTTCGCAGCACCAAGCCGCGAAGTCACTTTCGTTCTTGCCCGACTTTCCACTACACCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB618506             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCTCACCCTGCTCGAGCTCGTCGGCGCCGACCGCCCGGGCCTCCTCTCGGAGGTGTTCGCCGTGCTGCACGACCTCCGGTGTAACACCGTCGAGGCCAGGGCGTGGACGCACGGCGGCCGCGTCGCAGCGCTGGTGTTCGTCCGCGACGAGGAGACGGGCGCGCCGATCGACGACGCGGCCCGGGTCAGGCGCATCGAGTCCCGCCTCAGGCACGTCCTCCGCGGCGGCGCGCGCTGCGCGAGGACGGTCCTGGCTGATCCGTCGGCGGCCGGCAACCTGGACCGGAGGCTCCACCAGCTGCTGAACGAGGACGGGGAGGCCGACAGCCGCGGCGCCGCGCCGATGACGGCGGTGGCGGTGCAGGATTGGGGGGAGAGAGGGTACTCGGTGGTGACCGTGAGCTGCCGCGACAGGCCGAAGCTGCTCTTCGACGTGGTCTGCACCTTGACGGACTTGGATTACGTGGTGTACCACGGCACGTTCGACACCGACGGCGATCACGCGCAGCAGGAGTTCTACATACGGCGTTCGGACGGGCGGCCAATCAGCTCGGAGGCCGAGAGGCAGCATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATCCGAGGTACGTGATGGAGTAGCAGTAGTATCTCCTTTGCTTTCCCTCCATGCCACGCCACCGATCGCGGCCGTGCTGTGCTGTGCCCACTTCGCAGCACCAAGCCGCGAAGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB618507             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGCGAAGTCACTTTCGTTCTTGCCCGACTTTCCACTACACCCCCCATGTGTTCGGCCGAAATCCCAGCCAGCGCGCGCGGTGCCCGTCCGTCTGACGCGATCTTTTTTCTGTGTGCAGGGCGTGCGGCTCGAGCTCCGCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCCTCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACGTCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGATCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAGGCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGAAGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGATCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTAGATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGAAAAAGGCTGCTTGTCGGTAATTAACAGCTTGGAGGTTTAAAGGGACGCGTTGGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTATATAAGTGCTACTTAATGA                                                                                           ]
[-] EMBL CB618505             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCCTCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACGTCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGATCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAGGCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGAAGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGATCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTAGATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGAAAAAGGCTGCTTGTCGGTAATTAACAGCTTGGAGGTTTAAAGGGACGCGTTGGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTATATAAGTGCTACTTAATGATGTTTAACTAAAA  AAAAAGAA                                                                    ]
[+] EMBL CF309588             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGCGTTGGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTACATAAGTGCTACTTAATGATGTTTAACTAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF321352             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aggagtAGA AAAAGATGAATGTAAATAGGGTTTGTACATAAGTGCTACTTAATGATGTTTAACTAAAA  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA          ]




>consensus_12474#0
GGCGCGGCCACCTCACAAGGGAGCATCGGCACAGCCAACCGCAGCGCAGCGGCAGCCAAA
AACCCACCGTTTCCAATTCCTCGCCCGATTTTGAACCGCTCTCCGCCCGACCGAACCTGT
TCCACTCCGCCGAGCGGAAAAAAAAAACTTCTTCGCCGTCTCGAAGGAAATTTATTGGGA
AGAAACCGTTGCGGGAGGCGGGCAAACTGAAGCGGCAGCGGCAGCGGCAGAGGCGATGGA
GCGGTACCATCCCTCCGAGGTGTATGAGCTCTTCGTGCGGCACATGAACACCCCGAGGGT
GGTGGTGGACAGCGGGGTGTGCGCGACAGCGACGCTGGTGCAGGTGCACAGCGCGCGGAA
GCACGGGATGCTGCTGGAGGCGGTGGCGGCGCTGTCGGAGCACGGGGTGTGCGTCCGCAA
GGGGTACATCTCGTCCGACGACGGGCGGTGGTTCATGGACGTGTTCCACGTCACGGACGC
CGCGGGGAGGAAGGTGGCCGACGCGGACGCGCTACTGGCGCGCCTCGAGTCGTCGCTGTC
CGCGGAAGCATTGCCGCGGGCGGCGGCGGGCGGCCCCGCCGCGGAGGGGCTCACCCTGCT
CGAGCTCGTCGGCGCCGACCGCCCGGGCCTCCTCTCGGAGGTGTTCGCCGTGCTGCACGA
CCTCCGGTGTAACACCGTCGAGGCCAGGGCGTGGACGCACGGCGGCCGCGTCGCAGCGCT
GGTGTTCGTCCGCGACGAGGAGACGGGCGCGCCGATCGACGACGCGGCCCGGGTCAGGCG
CATCGAGTCCCGCCTCAGGCACGTCCTCCGCGGCGGCGCGCGCTGCGCGAGGACGGTCCT
GGCTGATCCGTCGGCGGCCGGCAACCTGGACCGGAGGCTCCACCAGCTGCTGAACGAGGA
CGGGGAGGCCGACAGCCGCGGCGCCGCGCCGATGACGGCGGTGGCGGTGCAGGATTGGGG
GGAGAGAGGGTACTCGGTGGTGACCGTGAGCTGCCGCGACAGGCCGAAGCTGCTCTTCGA
CGTGGTCTGCACCTTGACGGACTTGGATTACGTGGTGTACCACGGCACGTTCGACACCGA
CGGCGATCACGCGCAGCAGGAGTTCTACATACGGCGTTCGGACGGGCGGCCAATCAGCTC
GGAGGCCGAGAGGCAGCATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATC
CGAGGTACGTGATGGAGTAGCAGTAGTATCTCCTTTGCTTTCCCTCCATGCCACGCCACC
GATCGCGGCCGTGCTGTGCTGTGCCCACTTCGCAGCACCAAGCCGCGAAGTCACTTTCGT
TCTTGCCCGACTTTCCACTACACCCCCCATGTGTTCGGCCGAAATCCCAGCCAGCGCGCG
CGGTGCCCGTCCGTCTGACGCGATCTTTTTTCTGTGTGCAGGGCGTGCGGCTCGAGCTCC
GCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCC
TCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACG
TCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGA
TCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAG
GCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGA
AGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGA
TCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTA
GATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGA
AAAAGGCTGCTTGTCGGTAATTAACAGCTTGGAGGTTTAAAGGGACGCGTTGGTGGGTCA
TGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTATATAA
GTGCTACTTAATGATGTTTAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence

                              [ATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATCCGAGGGCGTGCGGCTCGAGCTCCGCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCCTCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACGTCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGATCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAGGCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGAAGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGATCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTAGATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGAAAAAGGCTGCTTGTCGGTAATTAACAGCTTGGAGGTTTAAAGGGACGCGTTGGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTACATAAGTGCTACTTAATGATGTTGACTAAAAGGAACTATCATGTTTGACCTGCAAAAAAAAAGG]

[-] EMBL CB683388             [ATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATCCGAGGGCGTGCGGCTCGAGCTCCGCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCCTCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACGTCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGATCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAGGCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGAAGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGATCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTAGATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGAAAAAGGCTGCTTGTCGGTAATTAACAGCTTGGAGGTTTAAAGGGACGCGTTGGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTACATAAGTGCTACTTAATGATGTTGACTAAAAGGAACTATCATGTTTGACCTGCAAAAAAAAAGG]




>consensus_12474#1
ATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATCCGAGGGCGTGCGGCTCG
AGCTCCGCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGA
ACGGCCTCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCT
TCCACGTCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATAC
AGAGGATCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGG
CGGAAGGCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCG
TCAAGAAGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGT
GTCCGATCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAAT
TGAGTAGATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAG
AAATGAAAAAGGCTGCTTGTCGGTAATTAACAGCTTGGAGGTTTAAAGGGACGCGTTGGT
GGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGT
ACATAAGTGCTACTTAATGATGTTGACTAAAAGGAACTATCATGTTTGACCTGCAAAAAA
AAAGG

consensusID : consensus_12474#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [TTTAATTAGGTTGTTCACCGTGGTATATAAGTAGAAATGAGAAAAGGCTGGCTTGGTCCGGTAATTAAACAGCTTGGAGTTTAAAGGAACGCTTGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTATATAAGTGCTACTTAATGATGTTTAACTAAAAGGAACTATCATGTTTGACCTGCCAAAAA]

[+] EMBL BI813063             [TTTAATTAGGTTGTTCACCGTGGTATATAAGTAGAAATGAGAAAAGGCTGGCTTGGTCCGGTAATTAAACAGCTTGGAGTTTAAAGGAACGCTTGTGGGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTATATAAGTGCTACTTAATGATGTTTAACTAAAAGGAACTATCATGTTTGACCTGCCAAAAA]




>consensus_12474#2
TTTAATTAGGTTGTTCACCGTGGTATATAAGTAGAAATGAGAAAAGGCTGGCTTGGTCCG
GTAATTAAACAGCTTGGAGTTTAAAGGAACGCTTGTGGGTCATGCATCTTTTACATGGAA
ATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTATATAAGTGCTACTTAATGATGTT
TAACTAAAAGGAACTATCATGTTTGACCTGCCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GGCGCGGCCACCTCACAAGGGAGCATCGGCACAGCCAACCGCAGCGCAGCGGCAGCCAAA 60
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      AACCCACCGTTTCCAATTCCTCGCCCGATTTTGAACCGCTCTCCGCCCGACCGAACCTGT 120
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      TCCACTCCGCCGAGCGGAAAAAAAAAACTTCTTCGCCGTCTCGAAGGAAATTTATTGGGA 180
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      AGAAACCGTTGCGGGAGGCGGGCAAACTGAAGCGGCAGCGGCAGCGGCAGAGGCGATGGA 240
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GCGGTACCATCCCTCCGAGGTGTATGAGCTCTTCGTGCGGCACATGAACACCCCGAGGGT 300
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GGTGGTGGACAGCGGGGTGTGCGCGACAGCGACGCTGGTGCAGGTGCACAGCGCGCGGAA 360
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GCACGGGATGCTGCTGGAGGCGGTGGCGGCGCTGTCGGAGCACGGGGTGTGCGTCCGCAA 420
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GGGGTACATCTCGTCCGACGACGGGCGGTGGTTCATGGACGTGTTCCACGTCACGGACGC 480
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGCGGGGAGGAAGGTGGCCGACGCGGACGCGCTACTGGCGCGCCTCGAGTCGTCGCTGTC 540
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGCGGAAGCATTGCCGCGGGCGGCGGCGGGCGGCCCCGCCGCGGAGGGGCTCACCCTGCT 600
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGAGCTCGTCGGCGCCGACCGCCCGGGCCTCCTCTCGGAGGTGTTCGCCGTGCTGCACGA 660
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CCTCCGGTGTAACACCGTCGAGGCCAGGGCGTGGACGCACGGCGGCCGCGTCGCAGCGCT 720
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GGTGTTCGTCCGCGACGAGGAGACGGGCGCGCCGATCGACGACGCGGCCCGGGTCAGGCG 780
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CATCGAGTCCCGCCTCAGGCACGTCCTCCGCGGCGGCGCGCGCTGCGCGAGGACGGTCCT 840
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GGCTGATCCGTCGGCGGCCGGCAACCTGGACCGGAGGCTCCACCAGCTGCTGAACGAGGA 900
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGGGGAGGCCGACAGCCGCGGCGCCGCGCCGATGACGGCGGTGGCGGTGCAGGATTGGGG 960
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GGAGAGAGGGTACTCGGTGGTGACCGTGAGCTGCCGCGACAGGCCGAAGCTGCTCTTCGA 1020
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGTGGTCTGCACCTTGACGGACTTGGATTACGTGGTGTACCACGGCACGTTCGACACCGA 1080
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGGCGATCACGCGCAGCAGGAGTTCTACATACGGCGTTCGGACGGGCGGCCAATCAGCTC 1140
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GGAGGCCGAGAGGCAGCATGTGATCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATC 1200
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGAGGTACGTGATGGAGTAGCAGTAGTATCTCCTTTGCTTTCCCTCCATGCCACGCCACC 1260
                                                                                   

consensus_12474#1      ------------------------------------------------------------
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GATCGCGGCCGTGCTGTGCTGTGCCCACTTCGCAGCACCAAGCCGCGAAGTCACTTTCGT 1320
                                                                                   

consensus_12474#1      ------------------------------------------------------ATGTGA 6
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      TCTTGCCCGACTTTCCACTACACCCCCCATGTGTTCGGCCGAAATCCCAGCCAGCGCGCG 1380
                                                                                   

consensus_12474#1      TCCGATGCTTGCAAGCGGCAATCGAGAGGCGCGCATCCGAGGGCGTGCGGCTCGAGCTCC 66
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      CGGTGCCCGTCCGTCTGACGCGATCTTTTTTCTGTGTGCAGGGCGTGCGGCTCGAGCTCC 1440
                                                                                   

consensus_12474#1      GCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCC 126
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GCATCTCCGACCGCCGCGGGCTGCTCGCCTACGTGACGCGCGTGTTCCGGGAGAACGGCC 1500
                                                                                   

consensus_12474#1      TCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACG 186
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      TCTCGGTGACGCACGCCGAGATCACGACAAGGGACGACATGGCCATGAACGTCTTCCACG 1560
                                                                                   

consensus_12474#1      TCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGA 246
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      TCACCGACGTGGCCGGCCGCCCCGCCGATCCCAAGACGATCGACGAGGTGATACAGAGGA 1620
                                                                                   

consensus_12474#1      TCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAG 306
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      TCGGCACGGAGAGCCTCCGGGTGGACGAGGAGCGGTGGCCGCGCCTTTGCTCGGCGGAAG 1680
                                                                                   

consensus_12474#1      GCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGA 366
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      GCGACGCCGCCGGCCGCGGCGGCGGCGGCGGGCTGTTCTCGCTGGGGAGCCTCGTCAAGA 1740
                                                                                   

consensus_12474#1      AGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGA 426
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      AGAACCTCTTCAGCCTTGGCCTCATAAGATCCTGCTCGTGAGTACAGATGACGTGTCCGA 1800
                                                                                   

consensus_12474#1      TCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTA 486
consensus_12474#2      ------------------------------------------------------------
consensus_12474#0      TCCGATGGCATGCTTGTGTAAATATGGGGGCGGTCCATGGGTTAGTTTGTAAATTGAGTA 1860
                                                                                   

consensus_12474#1      GATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGA 546
consensus_12474#2      ---------------TTTAATTAGG--TTGTTCACCGTGGTATATA---AGTAGAAATGA 40
consensus_12474#0      GATTTTTTTATGCTCTTTTTTTAGGATTTATTAGTTGTCACGTGTATATAGTAGAAATGA 1920
                                      ***  *****  ** **    **    * **   ***********

consensus_12474#1      -AAAAGGCTG-CTTG--TCGGTAATTAA-CAGCTTGGAGGTTTAAAGGGACGCGTTGGTG 601
consensus_12474#2      GAAAAGGCTGGCTTGGTCCGGTAATTAAACAGCTTGGAG-TTTAAAGGAACGCTT--GTG 97
consensus_12474#0      -AAAAGGCTG-CTTG--TCGGTAATTAA-CAGCTTGGAGGTTTAAAGGGACGCGTTGGTG 1975
                        ********* ****   ********** ********** ******** **** *  ***

consensus_12474#1      GGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTA 661
consensus_12474#2      GGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTA 157
consensus_12474#0      GGTCATGCATCTTTTACATGGAAATAGACAGATAGAAGATGAATGTAAATAGGGTTTGTA 2035
                       ************************************************************

consensus_12474#1      CATAAGTGCTACTTAATGATGTT-GACTAAAAGGAACTATCATGTTTGACCTGCAAAAAA 720
consensus_12474#2      TATAAGTGCTACTTAATGATGTTTAACTAAAAGGAACTATCATGTTTGACCTGCCAAAAA 217
consensus_12474#0      TATAAGTGCTACTTAATGATGTTTAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2095
                        **********************  *******  **  *  *      *      *****

consensus_12474#1      AAAGG------------------------------------------- 725
consensus_12474#2      ------------------------------------------------
consensus_12474#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2143