cluster # 12480

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Oryza sativa
cluster # 12480 cluster # 12480 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12480#0 length = 1387 sequences # 7
consensus_12480#1 length = 1177 sequences # 1

consensus_12480#2 length = 742 sequences # 1
consensus_12480#3 length = 539 sequences # 1

consensusID : consensus_12480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1387
fasta sequence

                              [CGCCCTTCTCCTTCCAGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCTCCGCTAGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCATCAGGCCAGTAGCGCCCCCATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCA-ACACAGGTCCACGGCAACGCCGCGCATCTCGGCAGCGCACACATCGGCGGCGCATCTCGGCAGCGGCAAGCCGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAACACTGTGCTGATTTCAGTAATTGGATCCCTCAAATTGTGAAATGCTTGCCAAAGGGAGGAAAGTTGCTGGAAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGCGATTATTAAACATAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTTAAGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCAGACAACATAAGTGACTGTGAGAGGCTGTACAAGGCCTTTTTACAGGAAATTAATACTTTTGAGCTGCCTCTTCTTAAAAGCAAGGCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAGGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCAAGAAGCAACTGGAACAGAGC-AAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGATTTCTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTCTTCTTCATGTGGTCGAGGAACTGCAGATCTCGATCGATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCATTCCTG-TTTCCACAAAGGCAGCTCTACATTATCTTGGGGACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTCTTGTCTGAGGTAACAGAACATCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGATCTTCTTTGATGCAAGCTGAGGTAAAACCGTCTGCCCTGGAGAATTTGGGTACATAAAAAAAAAAAG]

[+] EMBL AK059267             [CGCCCTTCTCCTTCCAGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCTCCGCTAGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCATCAGGCCAGTAGCGCCCCCATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCA ACACAGGTCCACGGCAACGCCGCGCATCTCGGCAGCGCACACATCGGCGGCGCATCTCGGCAGCGGCAAGCCGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAACACTGTGCTGATTTCAGTAATTGGATCCCTCAAATTGTGAAATGCTTGCCAAAGGGAGGAAAGTTGCTGGAAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGCGATTATTAAACATAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTTAAGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCAGACAACATAAGTGACTGTGAGAGGCTGTACAAGGCCTTTTTACAGGAAATTAATACTTTTGAGCTGCCTCTTCTTAAAAGCAAGGCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAGGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCAAGAAGCAACTGGAACAGAGC AAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGATTTCTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTCTTCTTCATGTGGTCGAGGAACTGCAGATCTCGATCGATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCATTCCTG TTTCCACAAAGGCAGCTCTACATTATCTTGGGGACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTCTTGTCTGAGGTAACAGAACATCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGATCTTCTTTGATGCAAGCTGAGGTAAAACCG                                     ]
[+] EMBL CB649234             [CGCCCCCCTCCTTCCAGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCTCCGCTAGTCCCACCGCCTCTCCTCTCGCTCTGGCTCCCCCATCAGGTCAGTAGCGCCCCCATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCAGACACAGGTCCACGGCAACGCCGCGCATCTCGGCAGCGCACACATCGGCGGCGCATCTCGGCAGCGGCAAGCCGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAACACTGTGCTGATTTCAGTAATTGGATCCCTCAAATTGTGAAATGCTTGCCAAAGGGAGGAAAGTTGCTGGAAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGCGATTATTAAACATAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTTAAGAAGCTTCATAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCAGACAACATAAATGACTGTGAGAGGCTGTACAAGGCCTTTTTACAGGAAATTAATACTTTTGAGCTGCCTCTTCTTAGAAGCAAGGCTGTCGTTGATGCAAACCTTACGGAGAAGGAGAGCTTCAACGAGCTGCACGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB651084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTAGGGAGAAGGAGAGCTTCAACGAGCTGCAGGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCAAGAAGCAACTGGAACAGAGC AAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGATTTCTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTCTTCTTCATGTGGTCGAGGAACTGCAGATCTCGATCGATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCATTCCTG TTTCCACAAAGGCAGCTTTACATTATCTTGGGGACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTCTTGTTTGAGGTAACAGAACATCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTAAAGGACAATCGGCAATGATCTTCTTT                                                           ]
[-] EMBL CA762593             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     acaaggggGAGGATCTCAAGAAGCAACTGGAACAGAGC AAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGATTTCTNTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTNTGCTCTTCTTCTTCACGTGGTCGAGGAACTGCAGATCTCGATCGATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCATTCCTG TTTCCACAAAGGCAGCTCTACATTATCTTGGGGACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTCTTGTCTGAGGTAACAGAACATCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGATCTTCTTTGATGCAAGCTGAGGTAAAACCGTCTGCCCTGGAGAATTTGGGTACATAAAAAAAAAAAG]
[+] EMBL OSS12419A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGGAACAGAGC AAAATTGAGAGGCAGCACAAAGAGGAGTGCGAA NAATCAGAAAAATGATTTCTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTCTTCTTCATGTGGTCGAGGAACTGCAGATCTCGATCGATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGNAAAGCGAGTTGCATTCCTGTTTTCCACAAAGGCAGCTCTACATTATCTT GGGNCTATATAGCACTTAATCGCCTNGATGc                                                                                                                                                                                                                                         ]
[+] EMBL AU093416             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ggaAACAGAGCAAAAATTGAGAGNCAGCACAAAGAGGNGTGCGAAGCAATCAGAAAAATGATTTCTTTGCAGCNTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGNGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTCTTCTTCATGTGGTCGAGGAACTGCAGATCTCGATCGATGATGAGCAGAGGAGCATAGCNGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCATTCCTG TTTCCACAAAGGCAGCTCTACATTATCTTGGGGACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTNGTAAGTTGTAATCGTGCCCTTTCTTGTCTGANGTAACAGAACATCATGGTNTTNACAaaantnaa                                                                                                                       ]
[-] EMBL CF279069             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGATTATCATCACTCTTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTCTTGTCTGAGGTAACAGAACATCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATAAATGTTATTATTTACTGAACAAaaaa                                                                         ]




>consensus_12480#0
CGCCCTTCTCCTTCCAGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCT
CCGCTAGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCATCAGGCCAGTAGCGCCCCC
ATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCAACACAGGTCCAC
GGCAACGCCGCGCATCTCGGCAGCGCACACATCGGCGGCGCATCTCGGCAGCGGCAAGCC
GGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAACACTGTGCTGATT
TCAGTAATTGGATCCCTCAAATTGTGAAATGCTTGCCAAAGGGAGGAAAGTTGCTGGAAG
GGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGCGATTATTAA
ACATAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTTAAGAAGCTTCA
GAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCAGACAACATAAGTGACTG
TGAGAGGCTGTACAAGGCCTTTTTACAGGAAATTAATACTTTTGAGCTGCCTCTTCTTAA
AAGCAAGGCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAGGA
TGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCAAGAAGCAACT
GGAACAGAGCAAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGAT
TTCTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGAT
TGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCA
GTTTGCTCTTCTTCTTCATGTGGTCGAGGAACTGCAGATCTCGATCGATGATGAGCAGAG
GAGCATAGCAGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATGAGCATAGAGGAAGT
TAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCG
AGTTGCATTCCTGTTTCCACAAAGGCAGCTCTACATTATCTTGGGGACTATATAGCACTG
AATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCA
GTAGTAAGTTGTAATCGTGCCCTTTCTTGTCTGAGGTAACAGAACATCATGGTGTTGACA
TATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGA
TCTTCTTTGATGCAAGCTGAGGTAAAACCGTCTGCCCTGGAGAATTTGGGTACATAAAAA
AAAAAAG

consensusID : consensus_12480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1177
fasta sequence

                              [CACTGCCCGACGGCACCCGGCCGCCGCCGCCGCCGCCTCCTCGACTCCTCCGCCCCGCCGCGTCGCACCCGACGACCGGACCGCCGTCTCCGCCTGCCGCCCGCACGGCCGCACCCGCACTGTGTTGATTTCGTTTATTGGATCCCTCGGATTGCAAAATGCTTGCCAAAGGGAGGAAAGTTGCTGGAAGGGGTGGAGACATGTCTGCACACTATGCATTTGGGCTGCAGGAAGATGATGCGATCATTAAACGTAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTAAAGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCTGACAACATAAGTGACTGTGAGAGGTTGTACAAGGCCTTTTTACAGGAAATTAATGCTTTTGTGTTGCCTCTTCTTAAGAGCAAGGCCGTGGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAAGACGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGAACTCAAAAAGAAACTGGAACAGAGCAGAATTGAGAGGCTGTACAAAGAGGAGTGCGAAGCGATCAGAAAAATGATTTCTTTGCAGCCTCCACGATCGGAAACAGAGAAGCTCATCGCGGGTCTTGAGAAGGAGATTGCTAATTTGGAGGCCGAGAATACAGCATGTATAAGGACTCTGGAACTAAGGAAGAAGCAGCTTTCTCTTCTTCTTCATGTGGTCGAGGAATTGCAGATCTCAATCGAAGATGAGCAGAGGAGCATAGCGGATGAGCTGAGAGCTGGCGCTGAAGAGCAGCAGAACATGAGCACAGATGAAGGTAGCGGCGATGCTTCAGATGCCATGGCTTTAGACTGATCCTAGCAGAAAAGCGCGATGCCTGCCTAGTTCCACAAAGGCAGATACGTTTTCTTGTGGCTATATAGCACTTAATTGCCTTGGTTAGACTTGTAGGTTGCTTAATTACACCCTGACACATGATGACTCTCGTGTAGTTTTTTTTTTAGAGAGAAGGCCAGAGTCTCTCGTGTAGTTTCAGTTGTAATTTCAGTCCTAAGTTGTAATCGTGTGCCCTTTGTCTGAAGGAACAGAACATCATGGTGTGACATATACTCCTCCAGATTATTCCAACATGTATGGTTGTT]

[+] EMBL AK063413             [CACTGCCCGACGGCACCCGGCCGCCGCCGCCGCCGCCTCCTCGACTCCTCCGCCCCGCCGCGTCGCACCCGACGACCGGACCGCCGTCTCCGCCTGCCGCCCGCACGGCCGCACCCGCACTGTGTTGATTTCGTTTATTGGATCCCTCGGATTGCAAAATGCTTGCCAAAGGGAGGAAAGTTGCTGGAAGGGGTGGAGACATGTCTGCACACTATGCATTTGGGCTGCAGGAAGATGATGCGATCATTAAACGTAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTAAAGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCTGACAACATAAGTGACTGTGAGAGGTTGTACAAGGCCTTTTTACAGGAAATTAATGCTTTTGTGTTGCCTCTTCTTAAGAGCAAGGCCGTGGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAAGACGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGAACTCAAAAAGAAACTGGAACAGAGCAGAATTGAGAGGCTGTACAAAGAGGAGTGCGAAGCGATCAGAAAAATGATTTCTTTGCAGCCTCCACGATCGGAAACAGAGAAGCTCATCGCGGGTCTTGAGAAGGAGATTGCTAATTTGGAGGCCGAGAATACAGCATGTATAAGGACTCTGGAACTAAGGAAGAAGCAGCTTTCTCTTCTTCTTCATGTGGTCGAGGAATTGCAGATCTCAATCGAAGATGAGCAGAGGAGCATAGCGGATGAGCTGAGAGCTGGCGCTGAAGAGCAGCAGAACATGAGCACAGATGAAGGTAGCGGCGATGCTTCAGATGCCATGGCTTTAGACTGATCCTAGCAGAAAAGCGCGATGCCTGCCTAGTTCCACAAAGGCAGATACGTTTTCTTGTGGCTATATAGCACTTAATTGCCTTGGTTAGACTTGTAGGTTGCTTAATTACACCCTGACACATGATGACTCTCGTGTAGTTTTTTTTTTAGAGAGAAGGCCAGAGTCTCTCGTGTAGTTTCAGTTGTAATTTCAGTCCTAAGTTGTAATCGTGTGCCCTTTGTCTGAAGGAACAGAACATCATGGTGTGACATATACTCCTCCAGATTATTCCAACATGTATGGTTGTT]




>consensus_12480#1
CACTGCCCGACGGCACCCGGCCGCCGCCGCCGCCGCCTCCTCGACTCCTCCGCCCCGCCG
CGTCGCACCCGACGACCGGACCGCCGTCTCCGCCTGCCGCCCGCACGGCCGCACCCGCAC
TGTGTTGATTTCGTTTATTGGATCCCTCGGATTGCAAAATGCTTGCCAAAGGGAGGAAAG
TTGCTGGAAGGGGTGGAGACATGTCTGCACACTATGCATTTGGGCTGCAGGAAGATGATG
CGATCATTAAACGTAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTAA
AGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCTGACAACA
TAAGTGACTGTGAGAGGTTGTACAAGGCCTTTTTACAGGAAATTAATGCTTTTGTGTTGC
CTCTTCTTAAGAGCAAGGCCGTGGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACG
AGCTGCAAGACGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGAACTCA
AAAAGAAACTGGAACAGAGCAGAATTGAGAGGCTGTACAAAGAGGAGTGCGAAGCGATCA
GAAAAATGATTTCTTTGCAGCCTCCACGATCGGAAACAGAGAAGCTCATCGCGGGTCTTG
AGAAGGAGATTGCTAATTTGGAGGCCGAGAATACAGCATGTATAAGGACTCTGGAACTAA
GGAAGAAGCAGCTTTCTCTTCTTCTTCATGTGGTCGAGGAATTGCAGATCTCAATCGAAG
ATGAGCAGAGGAGCATAGCGGATGAGCTGAGAGCTGGCGCTGAAGAGCAGCAGAACATGA
GCACAGATGAAGGTAGCGGCGATGCTTCAGATGCCATGGCTTTAGACTGATCCTAGCAGA
AAAGCGCGATGCCTGCCTAGTTCCACAAAGGCAGATACGTTTTCTTGTGGCTATATAGCA
CTTAATTGCCTTGGTTAGACTTGTAGGTTGCTTAATTACACCCTGACACATGATGACTCT
CGTGTAGTTTTTTTTTTAGAGAGAAGGCCAGAGTCTCTCGTGTAGTTTCAGTTGTAATTT
CAGTCCTAAGTTGTAATCGTGTGCCCTTTGTCTGAAGGAACAGAACATCATGGTGTGACA
TATACTCCTCCAGATTATTCCAACATGTATGGTTGTT

consensusID : consensus_12480#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [GCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAGGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCAAGAAGCAACTGGAACAGAGCAAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGATTTTTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTCTTTTTCATGTGGTCGAGGAACTGCAGATTTCGATCGATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCCCTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCATTCCTGTTTCCACAAAGGCAGCTTTACATTATTTTGGGGACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTTTTGTTTGAGGTAACAGAACATCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGATTTTCTTTGAAAAAAAAAAAAAAAAAAGA]

[-] EMBL CB649235             [GCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAGGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCAAGAAGCAACTGGAACAGAGCAAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGATTTTTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTCTTTTTCATGTGGTCGAGGAACTGCAGATTTCGATCGATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCCCTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCATTCCTGTTTCCACAAAGGCAGCTTTACATTATTTTGGGGACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTTTTGTTTGAGGTAACAGAACATCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGATTTTCTTTGAAAAAAAAAAAAAAAAAAGA]




>consensus_12480#2
GCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACGAGCTGCAGGATGAGATT
CAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCAAGAAGCAACTGGAACAG
AGCAAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAATCAGAAAAATGATTTTTTTG
CAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATCTTGAGAAGGAGATTGCTAAT
TTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAACTAAGGAAGAAGCAGTTTGCT
CTTCTTTTTCATGTGGTCGAGGAACTGCAGATTTCGATCGATGATGAGCAGAGGAGCATA
GCAGATGAGCTGAGAGCTGCCCCTGAAGAGCAGAAGATGAGCATAGAGGAAGTTAGCGGC
GGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTGCA
TTCCTGTTTCCACAAAGGCAGCTTTACATTATTTTGGGGACTATATAGCACTGAATCGCC
TAGATGACTTTGTACCCTGACTCATGATTATCATCACTCTTGTAATTTCATCAGTAGTAA
GTTGTAATCGTGCCCTTTTTTGTTTGAGGTAACAGAACATCATGGTGTTGACATATGCGC
CTCCAGATTCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGATTTTCTT
TGAAAAAAAAAAAAAAAAAAGA

consensusID : consensus_12480#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [GACGCCGCCGCCCTTCTCCTTCCGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCTCCGCTAGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCATCAGGCCAGTAGCGCCCCCATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCAACACAGGTCCACGGCAACGCCGCGCATCTCGGCAGCGCACACATCGGCGGCGCATCTCGGCAGCGGCAAGTCGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAAGGAGGAAAGTTGCTGGAAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGCGATTATTAAACATAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTTAAGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCAGACAACATAAGTGACTGTGAGAGGCTGTACAAGGCCTTTTTACAGGAAATTAATACTTTTGAG]

[+] EMBL CF279068             [GACGCCGCCGCCCTTCTCCTTCCGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCTCCGCTAGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCATCAGGCCAGTAGCGCCCCCATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCAACACAGGTCCACGGCAACGCCGCGCATCTCGGCAGCGCACACATCGGCGGCGCATCTCGGCAGCGGCAAGTCGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAAGGAGGAAAGTTGCTGGAAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGCGATTATTAAACATAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTTAAGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCAGACAACATAAGTGACTGTGAGAGGCTGTACAAGGCCTTTTTACAGGAAATTAATACTTTTGAG]




>consensus_12480#3
GACGCCGCCGCCCTTCTCCTTCCGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCG
CCGTCCTCCGCTAGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCATCAGGCCAGTAG
CGCCCCCATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCAACACA
GGTCCACGGCAACGCCGCGCATCTCGGCAGCGCACACATCGGCGGCGCATCTCGGCAGCG
GCAAGTCGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAAGGAGGA
AAGTTGCTGGAAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATG
ATGCGATTATTAAACATAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCAC
TTAAGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCAGACA
ACATAAGTGACTGTGAGAGGCTGTACAAGGCCTTTTTACAGGAAATTAATACTTTTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12480#0      ------------------------------------------------------------
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      CACTGCCCGACGGCACCCGGCCGCCGCCGCCGCCGCCTCCTCGACTCCTCCGCCCCGCCG 60
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      ------------------------------------------------------------
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      CGTCGCACCCGACGACCGGACCGCCGTCTCCGCCTGCCGCCCGCACGGCCGCACCCGCAC 120
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      ------------------------------------------------------------
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      TGTGTTGATTTCGTTTATTGGATCCCTCGGATTGCAAAATGCTTGCCAAAGGGAGGAAAG 180
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      ------------------------------------------------------------
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      TTGCTGGAAGGGGTGGAGACATGTCTGCACACTATGCATTTGGGCTGCAGGAAGATGATG 240
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      ------------------------------------------------------------
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      CGATCATTAAACGTAGGCTTCTGACCAGGACAACAACTACCAGGGGTGAACCACCACTAA 300
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      ------------------------------------------------------------
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      AGAAGCTTCAGAAGAAGTTCATGTCCTTTGCCACTGAGGTTGAGAAGGATGCTGACAACA 360
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      -------------------------------------------------------CGCCC 5
consensus_12480#3      -----------------------------------------------GACGCCGCCGCCC 13
consensus_12480#1      TAAGTGACTGTGAGAGGTTGTACAAGGCCTTTTTACAGGAAATTAATGCTTTTGTGTTGC 420
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      TTCTCCTTCCAGGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCTCCGCT 65
consensus_12480#3      TTCTCCTTCC-GGTCTCGCCGCCGCCGACGCCGACGCCCAGGAGCTCGCCGTCCTCCGCT 72
consensus_12480#1      CTCTTCTTAAGAGCAAGGCCGTGGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACG 480
consensus_12480#2      -----------------GCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTCAACG 43
                                        ** *  *  ** **  **     ****   *    * **  * 

consensus_12480#0      AGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCA-TCAGGCCAGTAGCG----CCCCC 120
consensus_12480#3      AGTCCCACCGCCTCTCCTCTCGCTCTGCCTCCCCCA-TCAGGCCAGTAGCG----CCCCC 127
consensus_12480#1      AGCTGCAAGACGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGAACTCA 540
consensus_12480#2      AGCTGCAGGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGATCTCA 103
                       **   **             **      **  *    **** *   **  *     * * 

consensus_12480#0      ATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCAACACAGGTCCAC 180
consensus_12480#3      ATCCCTCTCTCGACCTGCTCCTCTCCTCTCGCCATCTCGCCAAATCCAACACAGGTCCAC 187
consensus_12480#1      AAAAGAAACTGGAACAGAGCAGAA--TTGAGAGGCTGTACAAAGAGGAGTGCGAAGCGAT 598
consensus_12480#2      AGAAGCAACTGGAACAGAGCAAAA--TTGAGAGGCAGCACAAAGAGGAGTGCGAAGCAAT 161
                       *       ** ** * *  *      *   *        * **    *   *    * * 

consensus_12480#0      GGCAACGCCGCGCATCTCGGCAGCGCACAC-ATCGGCGGCGCATCTCGGCAGCGGCAAGC 239
consensus_12480#3      GGCAACGCCGCGCATCTCGGCAGCGCACAC-ATCGGCGGCGCATCTCGGCAGCGGCAAGT 246
consensus_12480#1      CAGAAAAATG-ATTTCTTTGCAGCCTCCACGATCGGAAACAGAGAAGCTCATCGCGGGTC 657
consensus_12480#2      CAGAAAAATG-ATTTTTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGATC 220
                          **    *    * *  *****   *** *** *   *  *      **  *      

consensus_12480#0      CGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAACACTGTGCTGAT 299
consensus_12480#3      CGGCGACGAGCTGCAGCGCTTCAAAGCTTGATTACCCAAATACTACAA------------ 294
consensus_12480#1      TTGAGAAGGAGATTGCTAATTTGGAGGCCGAGAATACAGCATGTATAA------------ 705
consensus_12480#2      TTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAA------------ 268
                         * ** *           **   **   **  *  *      ** **            

consensus_12480#0      TTCAGTAATTGGATCCCTCAAATTGTGAAATGCTTGCCAAAGGGAGGAAAGTTGCTGG-- 357
consensus_12480#3      ------------------------------------------GGAGGAAAGTTGCTGG-- 310
consensus_12480#1      ------------------------GGACTCTGGAACTAAGGAAGAAGCAGCTTTCTCTTC 741
consensus_12480#2      ------------------------GGACCCTGGAACTAAGGAAGAAGCAGTTTGCTCTTC 304
                                                                  ** * *  ** **    

consensus_12480#0      ------AAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGC 411
consensus_12480#3      ------AAGGGGCGGAGACATGTCTGCACACTATGCATTTGGGCCGCAGGAAGATGATGC 364
consensus_12480#1      TTCTTCATGTGGTCGAGGAATTGCAGATCTCAATCGAAGATGAGCAGAGGAGCATAGCG- 800
consensus_12480#2      TTTTTCATGTGGTCGAGGAACTGCAGATTTCGATCGATGATGAGCAGAGGAGCATAGCA- 363
                             * * **  ***  *   * *    * **  *    *  *  ****  **     

consensus_12480#0      GATTATTAAACATAGGCTTCTGACCAGGAC--AACAACTACCAGGGGTGAACCACCACTT 469
consensus_12480#3      GATTATTAAACATAGGCTTCTGACCAGGAC--AACAACTACCAGGGGTGAACCACCACTT 422
consensus_12480#1      GATGAGCTGAGAGCTGGCGCTGAAGAGCAGCAGAACATGAGCACAGATGAA--GGTAGCG 858
consensus_12480#2      GATGAGCTGAGAGCTGCCCCTGAAGAGCAG---AAGATGAGCATAGAGGAA--GTTAGCG 418
                       *** *    * *   *   ****  ** *    *  *  * **  *  ***     *   

consensus_12480#0      AAGAAGCTTCAGAAGAAGTTCATGTCCTTTG-CCACTGAGGTTGAGAAGGATGCAGACAA 528
consensus_12480#3      AAGAAGCTTCAGAAGAAGTTCATGTCCTTTG-CCACTGAGGTTGAGAAGGATGCAGACAA 481
consensus_12480#1      GCGATGCTTCAGATGCCATGGCTTTAGACTGATC-------CTAGCAGAAAAGCGCGATG 911
consensus_12480#2      GCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATCCTAGCAGAAAAGCGAGTTG 478
                         *  ******** *   *   * *    **  *        *   *   * **      

consensus_12480#0      CATAAGTGACTGTG-AGAGGCTGTACAAGGCCTTTTTACAGGAAAT-TAATACTTTTGAG 586
consensus_12480#3      CATAAGTGACTGTG-AGAGGCTGTACAAGGCCTTTTTACAGGAAAT-TAATACTTTTGAG 539
consensus_12480#1      CCTGCCTAGTTCCACAAAGGCAGAT--ACGTTTTCTTGTGG-CTATATAGCACTTAATTG 968
consensus_12480#2      CATTCCTGTTTCCACAAAGGCAGCTTTACATTATTTTGGGGACTATATAGCACTGAATCG 538
                       * *   *   *    * **** *    *     * **   *   ** **  ***     *

consensus_12480#0      CTGCCTCTTCTTAAAAGCAAGGCTGTCGTTGATGCAAACCTTAGGGAGAAGGAGAGCTTC 646
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      CCTTGGTTAGACTTGTAGGTTGCTTAATTACACCCTGACACATGATGACTCTCGTGTAGT 1028
consensus_12480#2      CCTAGAT--GACTT--------------TGTACCCTGACTCATGATTATCATCA------ 576
                                                                                   

consensus_12480#0      AACGAGCTGCAGGATGAGATTCAGCGACAAATCTTGCAAGCTCAGACTGATATTGAGGAT 706
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      TTTTTTTTTAGAGAGAAGGCCAGAGTCTCTCGTGTAGTTTCAGTTGTAATTTCAGTCCTA 1088
consensus_12480#2      ----------------------------CTCTTGTAATTTCA---------TCAGTAGTA 599
                                                                                   

consensus_12480#0      CTCAAGAAGCAACTGGAACAGAGCAAAATTGAGAGGCAGCACAAAGAGGAGTGCGAAGCA 766
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      AGTTGTAATCGTGTGCCCTTT-GTCTGAAGGAACAGAACATCATGGTGT-GACATATACT 1146
consensus_12480#2      AGTTGTAATCGTGCCCTTTTTTGTTTGAGGTAACAGAACATCATGGTGTTGACATATGCG 659
                                                                                   

consensus_12480#0      ATCAGAAAAATGATTTCTTTGCAGCCTCCACGATCAGAAACAGAAAAGCTCATTGCGGAT 826
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      CCTCCAGATTATTCCAACATGTATGGTTGTT----------------------------- 1177
consensus_12480#2      CCTCCAGAT---TCCAATATGTATGATTGTTATTATTTACTGAACAATCGGCAATGATTT 716
                                                                                   

consensus_12480#0      CTTGAGAAGGAGATTGCTAATTTGGAGGCTGAGAATACTGCATGTATAAGGACCCTGGAA 886
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      TCTTTGAAAAAAAAAAAAAAAAAAGA---------------------------------- 742
                                                                                   

consensus_12480#0      CTAAGGAAGAAGCAGTTTGCTCTTCTTCTTCATGTGGTCGAGGAACTGCAGATCTCGATC 946
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      GATGATGAGCAGAGGAGCATAGCAGATGAGCTGAGAGCTGCCACTGAAGAGCAGAAGATG 1006
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      AGCATAGAGGAAGTTAGCGGCGGTGCTTCAGATGCCATGGCTGTAGATTGATCGACGATC 1066
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      CTAGCAGAAAAGCGAGTTGCATTCCTGTTTCCACAAAGGCAGCTCTACATTATCTTGGGG 1126
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      ACTATATAGCACTGAATCGCCTAGATGACTTTGTACCCTGACTCATGATTATCATCACTC 1186
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      TTGTAATTTCATCAGTAGTAAGTTGTAATCGTGCCCTTTCTTGTCTGAGGTAACAGAACA 1246
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      TCATGGTGTTGACATATGCGCCTCCAGATTCCAATATGTATGATTGTTATTATTTACTGA 1306
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      ACAATCGGCAATGATCTTCTTTGATGCAAGCTGAGGTAAAACCGTCTGCCCTGGAGAATT 1366
consensus_12480#3      ------------------------------------------------------------
consensus_12480#1      ------------------------------------------------------------
consensus_12480#2      ------------------------------------------------------------
                                                                                   

consensus_12480#0      TGGGTACATAAAAAAAAAAAG 1387
consensus_12480#3      ---------------------
consensus_12480#1      ---------------------
consensus_12480#2      ---------------------