|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1023 fasta sequence
[GGGGC-GGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGC-TGATCGATCAACGCGTT-GATCTATCTCTGATCGATCGAGAGATCGATC-AACCTGTACAGTGGACACCGATCGACGCGAATGTA-TGGCGGAATGCAGAGATGGTTC-TTG-TTTGTTTGTGTTTTTTC-TTGC-TTTGAAG-TTTGAAAGATTC-TGACCAAAGAAGGGCGCCGTATCCGGGAG-TTTG-TTTCGTCGTCG-TTTGCTTCGTTTGAC-GATGATGAACCAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTNGCTAGTAGTGTAGTGGTAGTAGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCATTCCGTTAT-ACTAGAGGCT-AGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAA-GCAAGCTTGCC-GTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAATTGAAGAATTTACCATTTGTCACTCTACCAAAAAAAAAGTGCTCAAATGCCACTCTCCCAAATATTCATTCCTAAATGTCACCCGGACCTCACCACTTATGTTTGAATGAAAAGTGAGGCTGACATGTGCGTTCGGATGGCATTTGGGAATGAAAATTTAGGAGAGTGGTATTTGAGTGCTATCATTTTGGTAGTTGCAAATAGTAAATTCTCCCCCTATTTTCTATGACACTAAACTCAGCCCAATACTATAAATTGGACTAAAATATATTTTGAAACGGAGGTAGTAGTATAACATATAAAAAA]
[+] EMBL OSC905 [GGGGCNGGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGCTTGATCGATCAACGCGTT GATCTATCTCTGATCGATCGAGAGATCGATCAAACCTGTACAGTGGACAACGATCGACGCGAATGTATTGGCGGAATTCAGAGATGGTTCTTTGTTTTGTTTGTGTTTTTTCTTTGCTTTTGAAGTTTTGAAAGATTCTTGACCAAAGAAGGGCGCCGTATTCCGGAGTTTTGTTTTCGTCGTCGTTTTNTTTCGTTTTACGGATGATG ACCAG ACCAaag ]
[+] EMBL AU082426 [ GC GGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGC TGATCGATCAACGCGTTGGATCTATCTCTGATCGATCGAGAGATCGATC AACCTGTACAGTGGACACCGATCGACGCGAATGTA TGGCGGAATGCAGAGATGGTTC TTG TTTNTTTGTGTTTTTTC TTGC TTTGAAG TTTGAAAGATTC TGACCAAAGAAGGGCGCCGTATCCGGGAG TTTG TTTCGTCGTCG TTTGCTTCGNTTGAC GATGATGAACCAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTNGCTAGTAGTGTAGTGGTAGTAGTTAGGCAGGCANCCTTGCCTGGTGTGTGT ]
[+] EMBL AK063244 [ GC GGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGC TGATCGATCAACGCGTT GATCTATCTCTGATCGATCGAGAGATCGATC AACCTGTACAGTGGACACCGATCGACGCGAATGTA TGGCGGAATGCAGAGATGGTTC TTG TTTGTTTGTGTTTTTTC TTGC TTTGAAG TTTGAAA ]
[+] EMBL AU094480 [ CGGCCGCCGCAANTGANCTGACCTTGC TGATCGATCAACGCGTT GATCTATCTCTGATCGATCGAGAGATCGATC AACCTGTACAGTGGACACCGATCGACGCGAATGTA TGGCGGAATGCAGAGATGGTTC TTG TTTGTTTGTGTTTTTTC TTGC TTTGAAG TTTGAAAGATTC TGACCAAAGAAGGGCGCCGTATCCGGGAG TTTG TTTCGTCGTCG TTTGCTTCGTTTGAC GATGATGAACCAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTGGCTAGTAGTGTAGTGGTAGTAGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCATTCCGTTAT ACTAGAGGCT AGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAA GCAAGCTTGCC GTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAATTGAAGAATTTACCATTTGTCACTCTACCAAAAAAAA ]
[+] EMBL AU056888 [ GGTAGTNGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCATTCCGTTATNACTAGAGGCTAAGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTGGTAAAAGANAANACTGAGACTGATGTTTGTTAGATGCGTAA GCAAGCTTGCC GTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAATTGAAGAATTTACCATTTGTCACTCTACCAAAATACTAGTGCTCAAATGCCACTCTCCCAAATATTCATTCCTAAATGTCACCCGGACCTCACCACTTATGTTTGAATGAAAAGTGAGGCTGACATGTGCGTTCGGATGGCATTTGGGAATGAAAATTTAGGAGAGTGGTATTTGAGTGCTATCATTTTGGTAGTTGCAAATAGTAAATTCTCCCCCTATTTTCTATGACACTAAACTCAGCCCAATACTATAAATTGGACTAAAATATATTTTGAAACGGAGGTAGTAGTATAACATATAAAAAA]
[+] EMBL BM414929 [ agcTTCATTCCGTTAT AGTAGAGGCT AGTTGTCAGTTGGTTACCTGAACTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAAGGCAAGCTTGCCGGTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTT AGCTTTCAATTGAAGAATTTACCATTTGTCACTCTA ]
[+] EMBL BM414931 [ agcTTCATTCCGTTAT AGTAGAGGCT AGTTGTCAGTTGGTTACCTGAACTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAA GCAAGCTTGCC GTAATTGTGGCGTGTTGATA ]
consensusID : consensus_12483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCCTCGAGACAGAGCGAACTCTAGTGAACAAGCAAGAGGCCTAGACGCCAACGCAAGCTTAGCACATTCATGCCGCGCAGCACGCGCTCGCAGCACAAGGGTTCTCGTCCGTGGACGTCGCGTGTGGCCGCGGCGGCGGACCCGGCGTCGCGGTGCCTGGCGCTGTCCCTGCTGGCGCTCCTGCTGGTGTGCTCGCTCGGCCCCGGTGGCGCCCCCGGCGGCTCCCTCCTTTCCGGTGTGGCGTCTCTGTTGCCCGGCCCGGCTCTGTCGGCGCGCGCGTGCGACTCACTCTACTTGTCGTGGGTTGTGGTGACGCTGCACAGGCTCAGCGACAAGCGCGGCGCCCCGTACATCCTGGAGCACAACCCGCACGTCCACGACCCCGACCACCTCTTCCCCGGCCTCGGCGTCCAGATCGCGCCGTCCGAGCCCGGGTACATTCCCACAGATCACGTCCATCCTCTATCTGGACTCCATCGCCACTCGGGGCCTGCAGTGGTCTACGTCGTTTCTTGCTCCCTTGTCCGT]
[+] EMBL CA756357 [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCCTCGAGACAGAGCGAACTCTAGTGAACAAGCAAGAGGCCTAGACGCCAACGCAAGCTTAGCACATTCATGCCGCGCAGCACGCGCTCGCAGCACAAGGGTTCTCGTCCGTGGACGTCGCGTGTGGCCGCGGCGGCGGACCCGGCGTCGCGGTGCCTGGCGCTGTCCCTGCTGGCGCTCCTGCTGGTGTGCTCGCTCGGCCCCGGTGGCGCCCCCGGCGGCTCCCTCCTTTCCGGTGTGGCGTCTCTGTTGCCCGGCCCGGCTCTGTCGGCGCGCGCGTGCGACTCACTCTACTTGTCGTGGGTTGTGGTGACGCTGCACAGGCTCAGCGACAAGCGCGGCGCCCCGTACATCCTGGAGCACAACCCGCACGTCCACGACCCCGACCACCTCTTCCCCGGCCTCGGCGTCCAGATCGCGCCGTCCGAGCCCGGGTACATTCCCACAGATCACGTCCATCCTCTATCTGGACTCCATCGCCACTCGGGGCCTGCAGTGGTCTACGTCGTTTCTTGCTCCCTTGTCCGT]
consensusID : consensus_12483#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence
[AACTCTAGTGAACAAGCAAGAGGCCGAGACGCCAACGCAAGCTTAGCACAGTCATGGCGAGCAGCAGGCGGCAGCAGCACAAGGGTTCGTGGTCGTGGACGTCGCGGGTGGCGCCGGCGGCGAGCAGCGGGGTGGTGTGGCGGCGGTGTTGCGCGGCGCGGCGCTGTCGGCGCGGGCGTGCGAGGAGATCTACGTGGTGGCGGAGGGGGAGACGCTGCACAGCATCAGCGACAAGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGTCCAAGCCCAGGTAGATTACCACAAATCACATCGACACGGGATATGGACTCCATCGCCACTCGAGGGATGAACTGGTCAACGTGTATGAAACACACAAGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGATCTGGATTCGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATATGTGAATATAAAAAAAAAAAAAAAAAAA]
[+] EMBL BP184715 [AACTCTAGTGAACAAGCAAGAGGCCGAGACGCCAACGCAAGCTTAGCACAGTCATGGCGAGCAGCAGGCGGCAGCAGCACAAGGGTTCGTGGTCGTGGACGTCGCGGGTGGCGCCGGCGGCGAGCAGCGGGGTGGTGTGGCGGCGGTGTTGCGCGGCGCGGCGCTGTCGGCGCGGGCGTGCGAGGAGATCTACGTGGTGGCGGAGGGGGAGACGCTGCACAGCATCAGCGACAAGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGTCCAAGCCCAGGTAGATTACCACAAATCACATCGACACGGGATATGGACTCCATCGCCACTCGAGGGATGAACTGGTCAACGTGTATGAAACACACAAGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGATCTGGATTCGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATATGTGAATATAAAAAAAAAAAAAAAAAAA]
[+] EMBL AB088484 [ AAGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGATCTGGATTCGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATATGTGAATATAcacgcg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12483#1 ------------------------------------------------------------
consensus_12483#2 ------------------------------------------------------------
consensus_12483#0 GGGGCGGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGAC 60
consensus_12483#1 ------------------------------------------------------------
consensus_12483#2 ------------------------------------------------------------
consensus_12483#0 GCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGT 120
consensus_12483#1 ----------------------------------------------------------AG 2
consensus_12483#2 ------------------------------------------------------------
consensus_12483#0 CCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCG 180
consensus_12483#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 62
consensus_12483#2 ------------------------------------------------------------
consensus_12483#0 CCGCAACTGAACTGAACTTGCTGATCGATCAACGCGTTGATCTATCTCTGATCGATCGAG 240
consensus_12483#1 AGAGACTCCTCGAGACAGAGCGAACTCTAGTGAACAAGCAAG-AGGCCTAGACGCCAACG 121
consensus_12483#2 ----------------------AACTCTAGTGAACAAGCAAG-AGGCCGAGACGCCAACG 37
consensus_12483#0 AGATCGATCAACCTGTACAGTGGACACCGATCGACGCGAATGTATGGCGGAATGCAGAGA 300
** * * ** * * * * * * * ** *
consensus_12483#1 CAAGCTTAGCACATTCATGCCGCGCAGCACGCGCTCGCAGCACAAGGGTTCTCGTCCGTG 181
consensus_12483#2 CAAGCTTAGCACAGTCATGGCGAGCAGCAGGCGGCAGCAGCACAAGGGTTCGTGGTCGTG 97
consensus_12483#0 TGGTTCTTGTTTGTTTGTGTTTTTT--CTTGCTTTGAAGTTTGAAAGATTCTGACCAAAG 358
* * * ** * ** ** * *** *
consensus_12483#1 GACGTCGC-GTGTGGCCGCGGCGGCGGACCCGGCGTCGCGGTGCCTGGCGCTGTCCCTGC 240
consensus_12483#2 GACGTCGC-GGGTGGCGCCGGCGGCGA-----GCAGCGGGGTG----------------- 134
consensus_12483#0 AAGGGCGCCGTATCCGGGAGTTTGTTTCGTCGTCGTTTGCTTCGTTTGACGATGATGAAC 418
* * *** * * * * * *
consensus_12483#1 TGGCGCTCCTGCTGGTGTGCTCGCTCGGCCCCGGTGGCGCCCCCGGCGGCTCCCTCCTTT 300
consensus_12483#2 ------------------------------------------------------------
consensus_12483#0 CAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTNGCTA 478
consensus_12483#1 CCGGTGTGGCGTCTCT-GTTGCCCGGCCCGGCTCTGTCGGCGCGCGCGTGCGACTCACTC 359
consensus_12483#2 ---GTGTGGCGGCGGT-GTTGCGCGGCGCGGCGCTGTCGGCGCGGGCGTGCGAGGAGATC 190
consensus_12483#0 GTAGTGTAGTGGTAGTAGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCAT 538
**** * * * *** * * * ** * * * ****
consensus_12483#1 TACTTGTCGTGGGTTG--TGGTGAC-GCTGCACAGGCTCAGCGA-CAAGCGCGGCGCCCC 415
consensus_12483#2 TACGTGGTGGCGGAGG--GGGAGAC-GCTGCACAGCATCAGCGA-CAAGTGCGGCGACCC 246
consensus_12483#0 TCCGTTATACTAGAGGCTAGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTG 598
* * * * * * * * * ** * ** ** * ** * *
consensus_12483#1 GTACATCCTGGAGCACAACCCGCACGTCCACGAC---CCCGACCACCTCTTCCCCGGCCT 472
consensus_12483#2 GTACATCCTGGAGCAGAACCCGCACGTCCACGAC---CCCGACGACGTCTTCCCCGGCCT 303
consensus_12483#0 GTAAAAGAAAAAACTGAGACTG-ATGTTTGTTAGATGCGTAAGCAAGCTTGCCGTAATTG 657
*** * * * * * * * ** * * * * * **
consensus_12483#1 CGGCGTCCAGATCGCGCCGT--CCGAGCCCGGGTACATTCCCACA-GATCACGTCCATCC 529
consensus_12483#2 CGTCATCAAGATCACGCCGT--CCAAGCCCAGGTAGATTACCACA-AATCACATCGACAC 360
consensus_12483#0 TGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAA 717
* * * *** * * ** ** * * * * * *
consensus_12483#1 TCTATCTGGACTCCATC-GCCACTCGGGGCCTGCAGTGGTCTACGT-CGTTTCTTGCTCC 587
consensus_12483#2 GGGATATGGACTCCATC-GCCACTCGAGGGATGAACTGGTCAACGTGTATGAAACACACA 419
consensus_12483#0 TTGAAGAATTTACCATTTGTCACTCTACCAAAAAAAAAGTGCTCAAATGCCACTCTCCCA 777
* **** * ***** * ** * * *
consensus_12483#1 CTTGTCCGT--------------------------------------------------- 596
consensus_12483#2 AGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGAT 479
consensus_12483#0 AATATTCATTCCTAAATGTCACCCGGACCTCACCACTTATGTTTGAATGAAAAGTGAGGC 837
* * * *
consensus_12483#1 ------------------------------------------------------------
consensus_12483#2 CTGGATT--CGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATA 537
consensus_12483#0 TGACATGTGCGTTCGGATGGCATTTGGGAATGAAAATTTAGGAGAGTGGTATTTGAGTGC 897
consensus_12483#1 ------------------------------------------------------------
consensus_12483#2 TGTGAATATAAAAAAAAAAAAAAAAAAA-------------------------------- 565
consensus_12483#0 TATCATTTTGGTAGTTGCAAATAGTAAATTCTCCCCCTATTTTCTATGACACTAAACTCA 957
consensus_12483#1 ------------------------------------------------------------
consensus_12483#2 ------------------------------------------------------------
consensus_12483#0 GCCCAATACTATAAATTGGACTAAAATATATTTTGAAACGGAGGTAGTAGTATAACATAT 1017
consensus_12483#1 ------
consensus_12483#2 ------
consensus_12483#0 AAAAAA 1023
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||