cluster # 12485

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Oryza sativa
cluster # 12485 cluster # 12485 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12485#0 length = 441 sequences # 9

consensus_12485#1 length = 373 sequences # 1

consensusID : consensus_12485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 441
fasta sequence

                              [CTGTCAACGATACGCTACGTAACGGCATGATTGTGTTTTTTTTTTTTTTTTTTGGAATATCCTGGATT-CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA-CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG-CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAGTAGAGTATCGTTTTTCTACTC]

[+] EMBL CF331418             [CTGTCAACGATACGCTACGTAACGGCATGATTGTGTTTTTTTTTTTTTTTTTTGGAACATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATTGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTTAACTAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAG                     ]
[-] EMBL AU173559             [                                          TTTTTTTTTTTGGAATATCCTGGATTCCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGNACTTACAATNACANTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTNAGGATCATATGATCCCTTTGCTCAAAAAAAATGGCATNAGTTTCCCTCATACTTCGGGTCTGCCATNANAAAGTGGTAAGCGATGACCAAAANAAATATGAAGATGCCCAANAAATTGGCAAANAAACCCAAGTNTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGANAGTngng                                                          ]
[+] EMBL CF315483             [                                              TTTTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGA                                            ]
[-] EMBL CF315482             [                                               TTTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGAT                                           ]
[+] EMBL CF327413             [                                               TTTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATATATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAGAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGT                       ]
[-] EMBL CF327412             [                                                TTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATATATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAGAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTA                      ]
[-] EMBL CF331417             [                                                TTTTTGGAATATCCTGGATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAGT                    ]
[-] EMBL CF302519             [                                                                 ATT CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCA CTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACGAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCG CCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAGTAGAGTATCGTTTTTCTACTC]
[-] EMBL CF318779             [                                                           atacatgtg CACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCACCTATTTTGATCTGAGGATCATATGATCCCTTTGTTCAACAAAAATGGCATCAGTTTCCATCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCTCAAGATATTGGCAAAGAAACCCAAGTGTTGATCGTCAAACATGTTGGCCGCCGTCCTGGGAGGAGAGTCGCGC                                                         ]




>consensus_12485#0
CTGTCAACGATACGCTACGTAACGGCATGATTGTGTTTTTTTTTTTTTTTTTTGGAATAT
CCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAG
GTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGG
CATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCA
TCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAA
TATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGC
CGCCGCCTGGGAGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTAG
TAGAGTATCGTTTTTCTACTC

consensusID : consensus_12485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [TTTTTTTTAGATAAGTATAATCAATTTTTTTGGAATATCCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCGCCTGGGGAGGAGAGTCGCGCTCGCGTCTCT]

[-] EMBL AU071002             [TTTTTTTTAGATAAGTATAATCAATTTTTTTGGAATATCCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCGCCTGGGGAGGAGAGTCGCGCTCGCGTCTCT]




>consensus_12485#1
TTTTTTTTAGATAAGTATAATCAATTTTTTTGGAATATCCTGGATTCACTATTTCAATCG
ATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAGGTCCAGATTTCGCGTAAGAACT
TACAATAACAGTCAAGCACTATTGCTATCATTAACTGGCATACATCGCACTATTTTGATC
TGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCATCAGTTTCCCTCATACTTCGGG
TCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAATATGAAGATGCCCAAGAAATTG
GCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGCCGCCGCCTGGGGAGGAGAGTCG
CGCTCGCGTCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12485#0      CTGTCAACGATACGCTACGTAACGGCATGATTGTGTTTTTTTTTTTTTTTTTTGGAATAT 60
consensus_12485#1      ----------------------TTTTTTTTAGATAAGTATAATCAATTTTTTTGGAATAT 38
                                                  *     *   * *  *   **************

consensus_12485#0      CCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAG 120
consensus_12485#1      CCTGGATTCACTATTTCAATCGATTAAACATGTGTAATGTCAAAATGCCAGAAATTGCAG 98
                       ************************************************************

consensus_12485#0      GTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGG 180
consensus_12485#1      GTCCAGATTTCGCGTAAGAACTTACAATAACAGTCAAGCACTATTGCTATCATTAACTGG 158
                       ************************************************************

consensus_12485#0      CATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCA 240
consensus_12485#1      CATACATCGCACTATTTTGATCTGAGGATCATATGATCCCTTTGCTCAACAAAAATGGCA 218
                       ************************************************************

consensus_12485#0      TCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAA 300
consensus_12485#1      TCAGTTTCCCTCATACTTCGGGTCTGCCATCACAAAGTGGTAAGCGATGACCAAGACAAA 278
                       ************************************************************

consensus_12485#0      TATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGC 360
consensus_12485#1      TATGAAGATGCCCAAGAAATTGGCAAAGAAACCCAAGTCTTGATCGTCAAACATCTTGGC 338
                       ************************************************************

consensus_12485#0      CGCCGCCTGGG-AGGAGAGTCGCGCTCGCGTCTCTCGATCTCGAGTCGTCGAAGGGTGTA 419
consensus_12485#1      CGCCGCCTGGGGAGGAGAGTCGCGCTCGCGTCTCT------------------------- 373
                       *********** ***********************                         

consensus_12485#0      GTAGAGTATCGTTTTTCTACTC 441
consensus_12485#1      ----------------------