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Oryza sativa
cluster # 12487 cluster # 12487       Sequences # 10       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12487#0 length = 1608 sequences # 4  
consensus_12487#1 length = 804 sequences # 4  
 consensus_12487#2 length = 694 sequences # 1  
consensus_12487#3 length = 515 sequences # 1  
consensusID : consensus_12487#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1608
fasta sequence 
                              [CGGTCCTCACCGTTCAATCGCTCAAGGATCATCAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCGGGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCGGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTCGGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTCGCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTTTGCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGTGCTTGTTGAGGATGAAACCGT-GGTCGAGAATGAGTTTAAGCTAGTTGGACTGCACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGAGTCTGTGTGGTCTTTGAGAGAGGTAATCTTTGTAATTTGGATTTCGGATTTGCATCTGAGGAGACCACTTAACATTGATGTTTTCAAGGTGCCCTTTTCATTCTTTAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTTGAAAAGCGAATTCATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGTACTGACTACAAGTAATCATGAAGTGCTCTGCTAGCATTGCTCTAGTCACTAGTCAGAATGTTCGGTTTTTACTGGTATTCAAGAAAGGGGCTTGGTTTTATCCAAAAGCGAAGA]

[+] EMBL CB642986             [CGGTCCTCACCGTTCAATCGCTCAAGGATCATCAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCGGGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCGGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTCGGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTCGCAGCTCTGGGTCGACGCCGCGTCGCGGATTGTTGCATTGGTTGAAGTGAAGACAAGTTTGCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGTGCTTGTTGACGATGAAACCGTGGGTCGAGAATGACTTTAAGCTAGTTGGACTGCACAGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK120587             [         CCGTTCAATCGCTCAAGGATCATCAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCGGGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCGGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTCGGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTCGCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTTTGCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGTGCTTGTTGAGGATGAAACCGT GGTCGAGAATGAGTTTAAGCTAGTTGGACTGCACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGAGTCTGTGTGGTCTTTGAGAGAGGTAATCTTTGTAATTTGGATTTCGGATTTGCATCTGAGGAGACCACTTAACATTGATGTTTTCAAGGTGCCCTTTTCATTCTTTAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTTGAAAAGCGAATTCATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGTACTGACTACAAGTAATCATGAAGTGCTCTGCTAGCATTGCTCTAGTCACTAGTCAGAATGTTCGGTTTTTACTGGTATTCAAGAAAGGGGCTTGGTTTTATCCAAAAGCGAAGA]
[+] EMBL CB643067             [                   GCTCAAGGATCATCGAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAACGGGAGCTCCAGGAGGAGGAGGACGAGGAGGCGGAGGCTGTTGACCCACGGGATGGAGGGGGAGAATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB672355             [                    CTCAACGATCATCAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCGGGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCGGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTCGGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTCGCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTTTGCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGTGCTTGTTGAGGATGAAACCGT GGTCGAGAATGAGTTTAAGCTAGTTGGACTGCACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_12487#0
CGGTCCTCACCGTTCAATCGCTCAAGGATCATCAAGGATGTGCTCCTGCGCGCGATTCCC
GCACCCGGCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAA
GCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGC
CCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCT
CGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCG
GGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCG
GAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTC
GGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTC
GCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTTT
GCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGT
GCTTGTTGAGGATGAAACCGTGGTCGAGAATGAGTTTAAGCTAGTTGGACTGCACAGCTT
GGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGAGTCTGTGTGG
TCTTTGAGAGAGGTAATCTTTGTAATTTGGATTTCGGATTTGCATCTGAGGAGACCACTT
AACATTGATGTTTTCAAGGTGCCCTTTTCATTCTTTAGGTGCGTGGCTTCACCTTTGACA
TCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTT
CTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATA
CAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGG
GCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGA
GAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCC
ATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATA
GTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCT
GGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTT
TTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCT
TTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTT
GAAAAGCGAATTCATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGTACTGAC
TACAAGTAATCATGAAGTGCTCTGCTAGCATTGCTCTAGTCACTAGTCAGAATGTTCGGT
TTTTACTGGTATTCAAGAAAGGGGCTTGGTTTTATCCAAAAGCGAAGA

consensusID : consensus_12487#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 804
fasta sequence 
                              [TAAGCTAGTTGGACTGCACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTTGAAAAGC-GAATT-CATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGTACTGACTACAAGTAATCATGAAGTGCTCTGCTAGCATTGCTCTA---AAAAACATGAAAGG]

[-] EMBL CB643068             [TAAGCTAGTTGGACTGCACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTGGAAAAGC GAATT CATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGTACTGACTACAAGTAAACGGGAAGTGCTCTGCTAGCATTGCTCTA   AAAAACCTTAAAGG]
[-] EMBL CB664268             [                CACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTTGAAAAGCAGAATTCCATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGT                                                             ]
[-] EMBL CB666698             [                                               CTAGGAGGCGTAATGTTGGTAAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTTGAAAAGC GAATT CATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGTACTGACTACAAGTAGTCATGAAGTGCTCTGCTAGCATTGCTCTAGTCAAAAAAAGGA    ]
[-] EMBL CB642987             [                                                                   AAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACATGATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCACGCACGGGTTTCTGTGGCTTTGGTGGGTTGTTGAAAAGC GAATT CATTTGTAAGACATCGATGGAATAGAATGCCCTTTTGACTGTACTGACTACAAGTGATGATGAAGTGCTCTGCTAGCATTGCTCTA   AAAAACATaa    ]




>consensus_12487#1
TAAGCTAGTTGGACTGCACAGCTTGGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAA
TGTTGGTAAGGTGCGTGGCTTCACCTTTGACATCAACACTGGTGCTATGGAGTCTCTTGA
GCTTGACTCGTTTGGGATTTCCATTGTCCCTTCTAGTCTGGTAAGCACATATTGCTTGTT
TGTTGAAGATGTGCTTGATATAGTTTCTGATACAATAGTGGTGCATGAAGATGCAATCTC
TCGGGTTCAACGGTTAACACAGGGTATTTGGGGCACACAAAATATCCAAGGACCTGGTGG
TCAGATGGATGATAACGGTAGATATCGGAGGAGAAAAGCTCGGCGTGTTCAGAGACAAAA
CGGTCTACGAAATTCCAGTGGCCGAAAACTCCATAGGAAGATGAGGGACCGAGATGGTGA
CTGGGAACTACCAATGGACTATTGACCAAATAGTCTTCGAAATTCCAGTGTTCGAAAACT
CCATAGGAAAATGAGGGACCGGGATGATGGCTGGGAACTACCAATGGACAACGGACACAT
GATGCTCGCGGGAGCATCAGGGAGAAACTTTTTTCTCCTGTTTCAGTGAATGATTGTCAG
GCGCCACTGGAGTATATGGCTAGTTTATGCCTTTAGTTAGTTGTAGATATTGGAGGATCA
CGCACGGGTTTCTGTGGCTTTGGTGGGTTGTTGAAAAGCGAATTCATTTGTAAGACATCG
ATGGAATAGAATGCCCTTTTGACTGTACTGACTACAAGTAATCATGAAGTGCTCTGCTAG
CATTGCTCTAAAAAACATGAAAGG

consensusID : consensus_12487#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence 
                              [CAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGTCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCGGGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCGGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTCGGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTCGCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTTTGCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGTGCTTGTTGAGGATGAAACCGTGGTCGAGAATGAGTTTAAGCTAATTGGACTGCACAGCTTGTGTTGTTACATCTACGAGGCGTAAAGATGGTAAAGCGCGTGGCTTCACCTTTGACATCAACACT]

[+] EMBL CB666697             [CAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGTCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCGGGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCGGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTCGGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTCGCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTTTGCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGTGCTTGTTGAGGATGAAACCGTGGTCGAGAATGAGTTTAAGCTAATTGGACTGCACAGCTTGTGTTGTTACATCTACGAGGCGTAAAGATGGTAAAGCGCGTGGCTTCACCTTTGACATCAACACT]




>consensus_12487#2
CAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGGTCCTTGCAACCCGCGCCCGCGCCC
GCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCCCCCACCACGCGCGGCCCATGCCCA
TCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGGCGGGACGACTCGACGGCGCCGCCG
CCGCCGCCGCCGTCCACCTTCGACTTCCTCGCGCTGAAGCGGGAGCTCGAGGAGGAGGAG
GAGGAGGAGGTGGTGGCTGTTGAGCCGCGGGATGGAGGGGGCGGAGATGGGCTTGCCAGT
GAGGACGATGGCGACGGGGAGGCGAAGCGGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGG
AGGAAGAGGCGGCAGATGGCGAGGCGGTCGGGGCTGCTCGCCAAGCAGGTGATCAGCGTC
AGCTCGGCGCGGAGCCTCGGGTTCGTGTCGCAGCTCTGGGTCGACGCCGCGTCGTGGATT
GTTGCATTGGTTGAAGTGAGGCCAAGTTTGCTTTCGGGAGAAGCTGAGAAATTCCTTTTT
GAGGACATATATCAGGTTGGAGATGTTGTGCTTGTTGAGGATGAAACCGTGGTCGAGAAT
GAGTTTAAGCTAATTGGACTGCACAGCTTGTGTTGTTACATCTACGAGGCGTAAAGATGG
TAAAGCGCGTGGCTTCACCTTTGACATCAACACT

consensusID : consensus_12487#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence 
                              [CAAAATATCCAAGGCCCTGGTGGTCAGATGGATGATACCGGTAGATTTCGGGGGGGAAAAGCTCGGGGTGTTCAGAGACAAAACGGTTTTGGAAATTCCAGTGGCCGAAAACTCCATAGGAAAATGAGGGCCCGAGATGGTGACTGGGAATTCCCAATGGATTTTTGCCCAAATAGTTTTTGAAATTCCAGTGTTGGAAAACCCCATAGGAAAAAGAGGGCCCGGGATGATGGTTGGGAATTCCCAATGGCCAACGGCCCCATGATGCTCGGGGGGGCATCAGGGAGAAACTTTTTTTTCCTGTTTCAGGGAAAGATTTTCAGGCCCCCCGGGAGTATATGGCTAGTTTATCCCTTTAGTTAGTTGTAGATATTGGGGGATCCCCCCCGGGTTTTTGTGGCTTTGGGGGGTTGTTGAAAAGGGAATTCATTTGTAAGCCATCGATGGAATGGAATCCCCTTTTGCCTGTATTGATTCCAAGTAATCATGAAGTGTTTTGTTACCATTGCTTTAAA]

[-] EMBL CB672356             [CAAAATATCCAAGGCCCTGGTGGTCAGATGGATGATACCGGTAGATTTCGGGGGGGAAAAGCTCGGGGTGTTCAGAGACAAAACGGTTTTGGAAATTCCAGTGGCCGAAAACTCCATAGGAAAATGAGGGCCCGAGATGGTGACTGGGAATTCCCAATGGATTTTTGCCCAAATAGTTTTTGAAATTCCAGTGTTGGAAAACCCCATAGGAAAAAGAGGGCCCGGGATGATGGTTGGGAATTCCCAATGGCCAACGGCCCCATGATGCTCGGGGGGGCATCAGGGAGAAACTTTTTTTTCCTGTTTCAGGGAAAGATTTTCAGGCCCCCCGGGAGTATATGGCTAGTTTATCCCTTTAGTTAGTTGTAGATATTGGGGGATCCCCCCCGGGTTTTTGTGGCTTTGGGGGGTTGTTGAAAAGGGAATTCATTTGTAAGCCATCGATGGAATGGAATCCCCTTTTGCCTGTATTGATTCCAAGTAATCATGAAGTGTTTTGTTACCATTGCTTTAAA]




>consensus_12487#3
CAAAATATCCAAGGCCCTGGTGGTCAGATGGATGATACCGGTAGATTTCGGGGGGGAAAA
GCTCGGGGTGTTCAGAGACAAAACGGTTTTGGAAATTCCAGTGGCCGAAAACTCCATAGG
AAAATGAGGGCCCGAGATGGTGACTGGGAATTCCCAATGGATTTTTGCCCAAATAGTTTT
TGAAATTCCAGTGTTGGAAAACCCCATAGGAAAAAGAGGGCCCGGGATGATGGTTGGGAA
TTCCCAATGGCCAACGGCCCCATGATGCTCGGGGGGGCATCAGGGAGAAACTTTTTTTTC
CTGTTTCAGGGAAAGATTTTCAGGCCCCCCGGGAGTATATGGCTAGTTTATCCCTTTAGT
TAGTTGTAGATATTGGGGGATCCCCCCCGGGTTTTTGTGGCTTTGGGGGGTTGTTGAAAA
GGGAATTCATTTGTAAGCCATCGATGGAATGGAATCCCCTTTTGCCTGTATTGATTCCAA
GTAATCATGAAGTGTTTTGTTACCATTGCTTTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      CGGTCCTCACCGTTCAATCGCTCAAGGATCATCAAGGATGTGCTCCTGCGCGCGATTCCC 60
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GCACCCGGCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAA 120
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GCCCGCCCCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGC 180
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      CCCTCGGCGGGACGACTCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCT 240
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      CGCGCTGAAGCGGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCG 300
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GGATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGGCGACGGGGAGGCGAAGCG 360
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGTC 420
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGTC 480
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTTT 540
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTGT 600
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GCTTGTTGAGGATGAAACCGTGGTCGAGAATGAGTTTAAGCTAGTTGGACTGCACAGCTT 660
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      ------------------------------------------------------------
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      GGTGGGCTACAGTGTTGTTACATCTAGGAGGCGTAATGTTGGTAAGGTGAGTCTGTGTGG 720
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      --------------------------TAAGCTAGTTGGACTGCACAGCTTGGTGGGCTAC 34
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      TCTTTGAGAGAGGTAATCTTTGTAATTTGGATTTCGGATTTGCATCTGAGGAGACCACTT 780
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      AGTGTTGTTACATCTAGGAGGCGTAAT--GTTGGTAAGGTGCGTGGCTTCACCTTTGACA 92
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      AACATTGATGTTTTCAAGGTGCCCTTTTCATTCTTTAGGTGCGTGGCTTCACCTTTGACA 840
consensus_12487#2      ------------------------------------------------------------
                                                                                   

consensus_12487#1      TCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTT 152
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      TCAACACTGGTGCTATGGAGTCTCTTGAGCTTGACTCGTTTGGGATTTCCATTGTCCCTT 900
consensus_12487#2      ------------------------CAAGGATGTGCTCCTGCGCGCGATTCCCGCACCCGG 36
                                                                                   

consensus_12487#1      CTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATA 212
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      CTAGTCTGGTAAGCACATATTGCTTGTTTGTTGAAGATGTGCTTGATATAGTTTCTGATA 960
consensus_12487#2      TCCTTGCAACCCGCGCCCGCGCCCGCGCCGCCGCCTCCAAACCTCAAGCCCAAGCCCGCC 96
                                                                                   

consensus_12487#1      CAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGG 272
consensus_12487#3      ------------------------------------------------------------
consensus_12487#0      CAATAGTGGTGCATGAAGATGCAATCTCTCGGGTTCAACGGTTAACACAGGGTATTTGGG 1020
consensus_12487#2      CCCACCACGCGCGGCCCATGCCCATCCCCCCGCACCCTCGTCGCGCGCGCGGCCCCTCGG 156
                                                                                   

consensus_12487#1      GCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGA 332
consensus_12487#3      -----CAAAATATCCAAGGCCCTGGTGGTCAGATGGATGATACCGGTAGATTTCGGGGGG 55
consensus_12487#0      GCACACAAAATATCCAAGGACCTGGTGGTCAGATGGATGATAACGGTAGATATCGGAGGA 1080
consensus_12487#2      CGGGACGAC---TCGACGGCGCCGCCGCCGCCGCCGCCGTCCACCTTCGACTTCCTCGCG 213
                            * *    ** * **  * *  *        *  *    *  * **  **   *  

consensus_12487#1      GAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCC 392
consensus_12487#3      GAAAAGCTCGGGGTGTTCAGAGACAAAACGGTTTTGGAAATTCCAGTGGCCGAAAACTCC 115
consensus_12487#0      GAAAAGCTCGGCGTGTTCAGAGACAAAACGGTCTACGAAATTCCAGTGGCCGAAAACTCC 1140
consensus_12487#2      CTGAAGC---GGGAGCTCGAGGAGGAGGAGGAGGAGGAGGTGGTGGCTGTTGAGCCGCGG 270
                          ****   * * * **   **  *   **     **  *    *  *  **       

consensus_12487#1      ATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATA 452
consensus_12487#3      ATAGGAAAATGAGGGCCCGAGATGGTGACTGGGAATTCCCAATGGATTTTTGCCCAAATA 175
consensus_12487#0      ATAGGAAGATGAGGGACCGAGATGGTGACTGGGAACTACCAATGGACTATTGACCAAATA 1200
consensus_12487#2      GATGGAGGGGGCGGAGATGGGCTTGCCAGTGAGGACGATGG--CGACGGGGAGGCGAAGC 328
                          ***    * **    * * * *  * ** * *         **        * **  

consensus_12487#1      GTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGG-GACCGGGATGATGGC 511
consensus_12487#3      GTTTTTGAAATTCCAGTGTTGGAAAACCCCATAGGAAAAAGAGG-GCCCGGGATGATGGT 234
consensus_12487#0      GTCTTCGAAATTCCAGTGTTCGAAAACTCCATAGGAAAATGAGG-GACCGGGATGATGGC 1259
consensus_12487#2      GGAGCGGCGGCGGCGGCGAGAGCAGCGGCGGGAGGAAGAGGCGGCAGATGGCGAGGCGGT 388
                       *     *      * * *   * *    *   ***** * * **     **   *  ** 

consensus_12487#1      TGGGAACTACCAATGGACAACGGACACATGAT-GCTCGCGGGAGCATCAGGGAGAAACTT 570
consensus_12487#3      TGGGAATTCCCAATGGCCAACGGCCCCATGAT-GCTCGGGGGGGCATCAGGGAGAAACTT 293
consensus_12487#0      TGGGAACTACCAATGGACAACGGACACATGAT-GCTCGCGGGAGCATCAGGGAGAAACTT 1318
consensus_12487#2      CGGGGCTGCTCGCCAAGCAGGTGATCAGCGTCAGCTCGGCGCGGAGCCTCGGGTTCGTGT 448
                        ***      *      **   *      *   *****  *  *   *  **       *

consensus_12487#1      TTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGT----ATATGGCTA-GTT 625
consensus_12487#3      TTTTTTCCTGTTTCAGGGAAAGATTTTCAGGCCCCCCGGGAGT----ATATGGCTA-GTT 348
consensus_12487#0      TTTTCTCCTGTTTCAGTGAATGATTGTCAGGCGCCACTGGAGT----ATATGGCTA-GTT 1373
consensus_12487#2      CGCAGCTCTGGGTCGACGCCGCGTCGTGGATTGTTGCATTGGTTGAAGTGAGGCCAAGTT 508
                              ***  **   *     *  *         *    **     *  *** * ***

consensus_12487#1      TATGCCTTTAGTTAGTTGTAGA------TATTGGAGG-----ATCACGCACGGGTTTCTG 674
consensus_12487#3      TATCCCTTTAGTTAGTTGTAGA------TATTGGGGG-----ATCCCCCCCGGGTTTTTG 397
consensus_12487#0      TATGCCTTTAGTTAGTTGTAGA------TATTGGAGG-----ATCACGCACGGGTTTCTG 1422
consensus_12487#2      TGCTTTCGGGAGAAGCTGAGAAATTCCTTTTTGAGGACATATATCAGGTTGGAGATGTTG 568
                       *            ** **   *      * ***  *      ***      * * *  **

consensus_12487#1      TGGCTTTGGTGGGTTG---TTGAAAAGCGAATTCATTTGTAAGACATCGATGGAATAGAA 731
consensus_12487#3      TGGCTTTGGGGGGTTG---TTGAAAAGGGAATTCATTTGTAAGCCATCGATGGAATGGAA 454
consensus_12487#0      TGGCTTTGGTGGGTTG---TTGAAAAGCGAATTCATTTGTAAGACATCGATGGAATAGAA 1479
consensus_12487#2      TGCTTGTTGAGGATGAAACCGTGGTCGAGAATGAGTTTAAGCTAATTGGACTGCACAGCT 628
                       **  * * * ** *            * ****   ***        * **  * *  *  

consensus_12487#1      TGCCCTTTTGACTGTACTGACTACAAGTAATCATGAAGTGCTCTGCT--AGCATTGCTCT 789
consensus_12487#3      TCCCCTTTTGCCTGTATTGATTCCAAGTAATCATGAAGTGTTTTGTT--ACCATTGCTTT 512
consensus_12487#0      TGCCCTTTTGACTGTACTGACTACAAGTAATCATGAAGTGCTCTGCT--AGCATTGCTCT 1537
consensus_12487#2      TGTGTTGTTACATCTACGAGGCGTAAA-GATGGTAAAGCGCGTGGCTTCACCTTTGACAT 687
                       *    * **   * **        **   **  * *** *    * *  * * ***   *

consensus_12487#1      AAAAAACATGAAAGG--------------------------------------------- 804
consensus_12487#3      AAA--------------------------------------------------------- 515
consensus_12487#0      AGTCACTAGTCAGAATGTTCGGTTTTTACTGGTATTCAAGAAAGGGGCTTGGTTTTATCC 1597
consensus_12487#2      CAACACT----------------------------------------------------- 694
                                                                                   

consensus_12487#1      -----------
consensus_12487#3      -----------
consensus_12487#0      AAAAGCGAAGA 1608
consensus_12487#2      -----------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)