cluster # 1250

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Oryza sativa
cluster # 1250 cluster # 1250 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1250#0 length = 655 sequences # 1

consensus_1250#1 length = 190 sequences # 1

consensusID : consensus_1250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [NNANCANNTNANANAAANACNNNNNTNNTNANCCCCANANNTNNNAAACCNAATNTTAANTNCCCNTTNNNATTTNNNCATNAAAAAAGNGNTTTTNNANANTGCCCCCTNATNCAGTTNTTTTNTGNGCGAAAAATTTTTANCCTGAAATTTTGNNNACCNNCCAAANCCTTCNATTNGGCGGNTAAAGACNCTTCCGAGAGTTCGGAAATTGNNGGAANAGCCCNCCCCCNTTNTAAAGGNGNANNCNCCGAAATCCNCCGNCGNTTAANCAANTTGAAGAAGGAGNCCCCCCAGGANTTGGAGGCGAAGNTGGAACGAAGGGGCNCCGCCGCTTCGAGNCCGAGCTCGTGNAGGCGCTCGCCAACCTCGAGGCGCAGAAGNAGGAGCCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCNATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTNAACTTCTCGNNATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAACTGCTTTAAAA]

[+] EMBL AU032704             [NNANCANNTNANANAAANACNNNNNTNNTNANCCCCANANNTNNNAAACCNAATNTTAANTNCCCNTTNNNATTTNNNCATNAAAAAAGNGNTTTTNNANANTGCCCCCTNATNCAGTTNTTTTNTGNGCGAAAAATTTTTANCCTGAAATTTTGNNNACCNNCCAAANCCTTCNATTNGGCGGNTAAAGACNCTTCCGAGAGTTCGGAAATTGNNGGAANAGCCCNCCCCCNTTNTAAAGGNGNANNCNCCGAAATCCNCCGNCGNTTAANCAANTTGAAGAAGGAGNCCCCCCAGGANTTGGAGGCGAAGNTGGAACGAAGGGGCNCCGCCGCTTCGAGNCCGAGCTCGTGNAGGCGCTCGCCAACCTCGAGGCGCAGAAGNAGGAGCCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCNATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTNAACTTCTCGNNATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAACTGCTTTAAAA]




>consensus_1250#0
NNANCANNTNANANAAANACNNNNNTNNTNANCCCCANANNTNNNAAACCNAATNTTAAN
TNCCCNTTNNNATTTNNNCATNAAAAAAGNGNTTTTNNANANTGCCCCCTNATNCAGTTN
TTTTNTGNGCGAAAAATTTTTANCCTGAAATTTTGNNNACCNNCCAAANCCTTCNATTNG
GCGGNTAAAGACNCTTCCGAGAGTTCGGAAATTGNNGGAANAGCCCNCCCCCNTTNTAAA
GGNGNANNCNCCGAAATCCNCCGNCGNTTAANCAANTTGAAGAAGGAGNCCCCCCAGGAN
TTGGAGGCGAAGNTGGAACGAAGGGGCNCCGCCGCTTCGAGNCCGAGCTCGTGNAGGCGC
TCGCCAACCTCGAGGCGCAGAAGNAGGAGCCCGTCAAGGCGCTCGACGCCCAGATCGCCT
CCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCNATCCGCGTAATGGCCGCCCCGCCGCC
GGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATC
CGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTNAACTTCTCGNNATAAGTAT
AAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAACTGCTTTAAAA

consensusID : consensus_1250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [CCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCNCCGTGTTTTANCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCNCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C99413               [CCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCNCCGTGTTTTANCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCNCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1250#1
CCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCNCCGTGTTTTA
NCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCNCGTGATAAGT
ATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAAAAAAAAAAAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1250#0      NNANCANNTNANANAAANACNNNNNTNNTNANCCCCANANNTNNNAAACCNAATNTTAAN 60
consensus_1250#1      ------------------------------------------------------------
                                                                                  

consensus_1250#0      TNCCCNTTNNNATTTNNNCATNAAAAAAGNGNTTTTNNANANTGCCCCCTNATNCAGTTN 120
consensus_1250#1      ------------------------------------------------------------
                                                                                  

consensus_1250#0      TTTTNTGNGCGAAAAATTTTTANCCTGAAATTTTGNNNACCNNCCAAANCCTTCNATTNG 180
consensus_1250#1      ------------------------------------------------------------
                                                                                  

consensus_1250#0      GCGGNTAAAGACNCTTCCGAGAGTTCGGAAATTGNNGGAANAGCCCNCCCCCNTTNTAAA 240
consensus_1250#1      ------------------------------------------------------------
                                                                                  

consensus_1250#0      GGNGNANNCNCCGAAATCCNCCGNCGNTTAANCAANTTGAAGAAGGAGNCCCCCCAGGAN 300
consensus_1250#1      ------------------------------------------------------------
                                                                                  

consensus_1250#0      TTGGAGGCGAAGNTGGAACGAAGGGGCNCCGCCGCTTCGAGNCCGAGCTCGTGNAGGCGC 360
consensus_1250#1      ------------------------------------------------------------
                                                                                  

consensus_1250#0      TCGCCAACCTCGAGGCGCAGAAGNAGGAGCCCGTCAAGGCGCTCGACGCCCAGATCGCCT 420
consensus_1250#1      ------------------------------------------------------------
                                                                                  

consensus_1250#0      CCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCNATCCGCGTAATGGCCGCCCCGCCGCC 480
consensus_1250#1      ----------------------------------------------------------CC 2
                                                                                **

consensus_1250#0      GGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATC 540
consensus_1250#1      GGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCNCCGTGTTTTANC 62
                      *********************************************** ********** *

consensus_1250#0      CGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTNAACTTCTCGNNATAAGTAT 600
consensus_1250#1      CGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCNCGTGATAAGTAT 122
                      **************************************** ****** **  ********

consensus_1250#0      AAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAACTGCTTTAAAA----- 655
consensus_1250#1      AAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAAAAAAAAAAAAAAAAAA 182
                      ********************************************       ****     

consensus_1250#0      --------
consensus_1250#1      AAAAAAAA 190