These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [NNANCANNTNANANAAANACNNNNNTNNTNANCCCCANANNTNNNAAACCNAATNTTAANTNCCCNTTNNNATTTNNNCATNAAAAAAGNGNTTTTNNANANTGCCCCCTNATNCAGTTNTTTTNTGNGCGAAAAATTTTTANCCTGAAATTTTGNNNACCNNCCAAANCCTTCNATTNGGCGGNTAAAGACNCTTCCGAGAGTTCGGAAATTGNNGGAANAGCCCNCCCCCNTTNTAAAGGNGNANNCNCCGAAATCCNCCGNCGNTTAANCAANTTGAAGAAGGAGNCCCCCCAGGANTTGGAGGCGAAGNTGGAACGAAGGGGCNCCGCCGCTTCGAGNCCGAGCTCGTGNAGGCGCTCGCCAACCTCGAGGCGCAGAAGNAGGAGCCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCNATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTNAACTTCTCGNNATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAACTGCTTTAAAA] [+] EMBL AU032704 [NNANCANNTNANANAAANACNNNNNTNNTNANCCCCANANNTNNNAAACCNAATNTTAANTNCCCNTTNNNATTTNNNCATNAAAAAAGNGNTTTTNNANANTGCCCCCTNATNCAGTTNTTTTNTGNGCGAAAAATTTTTANCCTGAAATTTTGNNNACCNNCCAAANCCTTCNATTNGGCGGNTAAAGACNCTTCCGAGAGTTCGGAAATTGNNGGAANAGCCCNCCCCCNTTNTAAAGGNGNANNCNCCGAAATCCNCCGNCGNTTAANCAANTTGAAGAAGGAGNCCCCCCAGGANTTGGAGGCGAAGNTGGAACGAAGGGGCNCCGCCGCTTCGAGNCCGAGCTCGTGNAGGCGCTCGCCAACCTCGAGGCGCAGAAGNAGGAGCCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCNATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTNAACTTCTCGNNATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAACTGCTTTAAAA] consensusID : consensus_1250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [CCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCNCCGTGTTTTANCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCNCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99413 [CCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCNCCGTGTTTTANCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCNCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1250#0 NNANCANNTNANANAAANACNNNNNTNNTNANCCCCANANNTNNNAAACCNAATNTTAAN 60 consensus_1250#1 ------------------------------------------------------------ consensus_1250#0 TNCCCNTTNNNATTTNNNCATNAAAAAAGNGNTTTTNNANANTGCCCCCTNATNCAGTTN 120 consensus_1250#1 ------------------------------------------------------------ consensus_1250#0 TTTTNTGNGCGAAAAATTTTTANCCTGAAATTTTGNNNACCNNCCAAANCCTTCNATTNG 180 consensus_1250#1 ------------------------------------------------------------ consensus_1250#0 GCGGNTAAAGACNCTTCCGAGAGTTCGGAAATTGNNGGAANAGCCCNCCCCCNTTNTAAA 240 consensus_1250#1 ------------------------------------------------------------ consensus_1250#0 GGNGNANNCNCCGAAATCCNCCGNCGNTTAANCAANTTGAAGAAGGAGNCCCCCCAGGAN 300 consensus_1250#1 ------------------------------------------------------------ consensus_1250#0 TTGGAGGCGAAGNTGGAACGAAGGGGCNCCGCCGCTTCGAGNCCGAGCTCGTGNAGGCGC 360 consensus_1250#1 ------------------------------------------------------------ consensus_1250#0 TCGCCAACCTCGAGGCGCAGAAGNAGGAGCCCGTCAAGGCGCTCGACGCCCAGATCGCCT 420 consensus_1250#1 ------------------------------------------------------------ consensus_1250#0 CCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCNATCCGCGTAATGGCCGCCCCGCCGCC 480 consensus_1250#1 ----------------------------------------------------------CC 2 ** consensus_1250#0 GGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATC 540 consensus_1250#1 GGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCNCCGTGTTTTANC 62 *********************************************** ********** * consensus_1250#0 CGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTNAACTTCTCGNNATAAGTAT 600 consensus_1250#1 CGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCNCGTGATAAGTAT 122 **************************************** ****** ** ******** consensus_1250#0 AAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAACTGCTTTAAAA----- 655 consensus_1250#1 AAAATCAATGATCCTTTTGCTAGAAATTGGATTGAAATTATAAAAAAAAAAAAAAAAAAA 182 ******************************************** **** consensus_1250#0 -------- consensus_1250#1 AAAAAAAA 190 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||