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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1221 fasta sequence
[GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT-CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT-GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA-TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA-TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA-TTGGTTGTTCTAGGGCGTCT-CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT-CAAGTTAGCAG-CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA-CCCAG-CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA-CAGTTTAA-CTTTCAGTAGTATGTTTCG-CAAGGTACAAACCTAGAA-CTGTG-CAACTTT-CAGATCCAT-GAGT-CCCAT-GTTCTA-CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAGCTTCAGTTGAATTCTCGAAAAAAAAAA]
[+] EMBL AK073551 [GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTAGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAGCTTCAGTTGAATTC ]
[+] EMBL CF314319 [GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAATAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTATGGGTTTGGCCGAGTTT AAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTA ]
[+] EMBL CA765515 [ GATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGT CGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACTAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAANTTGNTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTNCCACAAGGGAGTTGNGGCTAAGCTTCTGGNGNGAAGNGCACTACAATTTCCTTGTACGCAACTGACGATCTNCTAANCCGCAAAACCAANAANAACCA TTGGT ]
[+] EMBL BE229387 [ CGAGAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTACGCGCGGCGSGGCGSGGCGAGAGTAGCCTTTTGATCCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTDGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTAT GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAAT ]
[-] EMBL BI306477 [ ATGAAAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTGGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAG ]
[-] EMBL BI305621 [ ATGANAGCTATGTACCTATGGAATA TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTGGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAG ]
[-] EMBL BI306540 [ ATGAAAGCTATGTACCTATGGAATATTAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACAAGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTCTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTGGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATA AAG ]
[-] EMBL CF314320 [ ACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTGCCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAAGAAGAAGCA TTGGTTGTTTTAGGGCGTCT CACCTCGAGCTTCCTTGAGCTTCTGCTGCTGCAGTTCTTTTCCCTT CAAGTTAGCAG CATCTGTGGTGCTTACTAGTTTTACTACCATGGCAA CCCAG CCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTA CAGTTTAA CTTTCAGTAGTATGTTTCG CAAGGTACAAACCTAGAA CTGTG CAACTTT CAGATCCAT GAGT CCCAT GTTCTA CCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAAaaa ]
[+] EMBL BI803658 [ gtcCCCCAGGGATGTGACTCCCCCAAGGGA TTGT GCTAAGCTTCTGGTGTGAAGTGCACTACAA TTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAACCCAAGAAGAAGCACTTGGTTGTTCTAGGGCGTCTCCACCTCGAGCTTCCTTGAGCTTCTGCTGCTCCAGTTCTTTTCCCTTCCAAGTTACCAGCCATCTGTGGTGCTTACTAGTTTTACTACCATGCCAACCCCAGCCCGCCACTCCAATTCCCTAACCTGAAAGAAGAGCTTATGTACCAGTTTAACCTTTCAGTAGTATGTTTCGCCAAGGTACAAACCTAGAACCTGTGCCAACTTTCCAGATCCATGGAGTCCCCATGGTTCTACCCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGGTGCTTGCTTTGTAAAATCATCATGTGA CTGGCTAGATTTTTTACCATATATAAGCTTCAGTTGAATTCTCGAAAAAAAAAA]
consensusID : consensus_12501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[ATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGTGGCGAGAGTGGCCTTTTGATCCGACGAAGCTAATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTATCGGTTTGGCCGAGTTTCAAATAAAGGGTGATGGAAGTTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCCAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAA]
[+] EMBL CF281813 [ATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGAGCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGTGGCGAGAGTGGCCTTTTGATCCGACGAAGCTAATAGGATGTCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAGGAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAACAGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGAGTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAAAGGTTGGGAAATTATCGGTTTGGCCGAGTTTCAAATAAAGGGTGATGGAAGTTGTCAGTTCCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCCAAACATGTGAGAAAGTTAGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATATAAAGTCTACTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12501#0 GAAAGATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGA 60
consensus_12501#1 -----ATGGCCTTTCTCTCTCCTTCGCTCTCATCAGCTCGAGCCCCGACAGCAAGTGTGA 55
*******************************************************
consensus_12501#0 GCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGCGGCGAGAGTGGCCTTTTGAT 120
consensus_12501#1 GCTACTGAACTCGAGACCCTCCTGTCGCGCGGCGCGGCGTGGCGAGAGTGGCCTTTTGAT 115
*************************************** ********************
consensus_12501#0 CCGACGAAGCTACCTTTTATCAGTCTAAGACCCTGCCAATGTCCATTTGGAGATAGGATG 180
consensus_12501#1 CCGACGAAGCTA----------------------------------------ATAGGATG 135
************ ********
consensus_12501#0 TCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAG 240
consensus_12501#1 TCGGAACAGCAGGATAGTACTAGTAAAAGCTCTAGCTCAAGCATCAGCAGCAGTACACAG 195
************************************************************
consensus_12501#0 GAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAAC 300
consensus_12501#1 GAGAGCGAGGAGGAGGTATCTATAACAATAGGTAGCCTCCTCGCCCAAGCAAAGAACAAC 255
************************************************************
consensus_12501#0 AGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGA 360
consensus_12501#1 AGTGGGCATAGTCTTGGAAGGCGCCTCTCTCAATTGGGTTCAATCCCGCACACTCCTCGA 315
************************************************************
consensus_12501#0 GTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAA 420
consensus_12501#1 GTTAATGGAAAAATCCCTAATCTTGATAATGCAACTTTGGATCATGAAAGATTGTCGGAA 375
************************************************************
consensus_12501#0 AGGTTGGGAAATTAT-GGTTTGGCCGAGTTTCAAATAGAGGGTGATGGAAATTGTCAGTT 479
consensus_12501#1 AGGTTGGGAAATTATCGGTTTGGCCGAGTTTCAAATAAAGGGTGATGGAAGTTGTCAGTT 435
*************** ********************* ************ *********
consensus_12501#0 CCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATCACAAACATGTGAGAAAGTT 539
consensus_12501#1 CCGAGCTTTGGCAGACCAGATATTTCGCAACCCCGATTATC-CAAACATGTGAGAAAGTT 494
***************************************** ******************
consensus_12501#0 AGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA 599
consensus_12501#1 AGTCATGAAACAGCTAAAGGAATTCAGAAAACAGTATGAAAGCTATGTACCTATGGAATA 554
************************************************************
consensus_12501#0 TAAAGTCTACTTGAAGAAAATGAAAAGATCTGGGGAATGGGGGGATCATCTGACTTTACA 659
consensus_12501#1 TAAAGTCTACTTGAA--------------------------------------------- 569
***************
consensus_12501#0 AGCAGCTGCAGACAGGTTTGGTGCCAAAATTTGTTTGCTGACGTCATTCAGAGACACCTG 719
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 CCTAATTGAGATAGTCCCCAGGGATGTGACTCCCACAAGGGAGTTGTGGCTAAGCTTCTG 779
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 GTGTGAAGTGCACTACAATTCCTTGTACGCAACTGACGATCTCCTAACCCGCAAAACCAA 839
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 GAAGAAGCATTGGTTGTTCTAGGGCGTCTCACCTCGAGCTTCCTTGAGCTTCTGCTGCTG 899
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 CAGTTCTTTTCCCTTCAAGTTAGCAGCATCTGTGGTGCTTACTAGTTTTACTACCATGGC 959
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 AACCCAGCCGGCACTGCAATTCCCTAACCTGAAAGAAGAGCTTATGTACAGTTTAACTTT 1019
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 CAGTAGTATGTTTCGCAAGGTACAAACCTAGAACTGTGCAACTTTCAGATCCATGAGTCC 1079
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 CATGTTCTACCCGGCGAGATGTAGTTTTGTTTTTGCATAGTATATTGTGATCTATCCAGG 1139
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 TGCTTGCTTTGTAAAATCATCATGTGAGCTGGCTAGATTTTTTACCATATATAAGCTTCA 1199
consensus_12501#1 ------------------------------------------------------------
consensus_12501#0 GTTGAATTCTCGAAAAAAAAAA 1221
consensus_12501#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||