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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1427 fasta sequence
[ACCTCCACTCCTCTCCACCCATCGCGGCCATAAGACGCCACCTCCCCTTCCCACCACGCCATCACCACCACCACCACCACCTCANCGCCGCCTCGCACGCAGACGGCGAGGCTTCCGGCGCGGCGGCGGAAGAGTAGCGCGA-CAA-G-CTGAGAGATGGAGCGGCGGCCGGAGCTGCGGCGGACGATGACGCTCTCGGAGCAGCTGTCCGCGCCCGACCAGGCCATCCGCGACTTCCTCAAGATCCCACACGACGGCCTCGGCGGCGGCGACGGCGAGGGAGGGAGGATCCCCGCCGCCGCGGGCGCCTCCGGTGGCGGCGGTGGCGTCGGTGGCATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTACGCCGCGCCGCGAGCGCG-TGGATGTCCGCGTCGCCCAAGCCCGCCGCGTCGAACAGCGGCGGCGGAGGCGGCGGCGGCGCGACGCTGAGCAGC-AGCAACAGC-GGCAGCAACC-ACAGCAACAAGTACAACTACTCCCCCGGCGAGGCCGC-GGCGGCGTTC-TCGCGCACCTTCTCCCGCACGCGGTCGCTCCGCCCGACGCCGACCTTCTCGCGCGCCACCTCCACCCGCCTCGGAGCCACAGCCTTCTCCAGCGGCTCCAGGCGCGCCGCGGTCGACGGCGGCGGCCACGCCAATGAGGACGACGACGAGGACCACACCGACGACGACGACGACGACGACGAAGAGGAGCAAGGCAAGGACGACGCGCCCGCGGCGCAGATGTCGCTGATGGCGCTACTGGAGCAATCGGACAGCCAGTGGGACTCGGAGGACGAGGACGACCAAGGCCACGGCGGTGGCGGCGGCGGCGGGGGCAACGGCGGCGGCGGCGGCGGCGGCGGCGCGCGCAAG-AACGGCGACGGCGACGACGACGAGGACGACGGCGAGGGGCGGGAGGAGGAGATGGTGCACGTGTGCTGCGTGTGCATGGTGCGCCACAAGGGCGCCGCCTTCAT-CCCGTGCGG-CCACACCTTCTGCCGCCTCTGCT-CCCGCGAGCTCTGGGT-CAGCCGCGGCAACTG-CCCTCTCTGCAACGGTTT-CAT-CCAAGAAATCCTCGACATCTTCTAATCATCTTCTTCAGAATTCAGATGCAAACCAAGAAATCCT-CGACATCTTCTAATCTTCTTCAGAATTCAGATG-CAGATAGAACG-ATCATGCAGCATGGCGGTAGTAGCTATAAGATTTGTTGGTTGGATTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCCGCTCCGCTGAAAATTAACCTGAAAAAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGCAACATGAAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCGGCACTGTCTCATTGATGAA--AAAAAA]
[+] EMBL CA755036 [ACCTCCACTCCTCTCCACCCATCGCGGCCATAAGACGCCACCTCCCCTTCCCACCACGCCATCACCACCACCACCACCACCTCANCGCCGCCTCGCACGCAAACNGCGAGGCTTCCGGCGCGGCGGCGGAAGAGTAGCGCGAGCGA G CTGAGAGATGGAGCGGCGGCCGGAGCTGCGGCGGACGATGACGCTCTCGGAGCAGCTGTCCGCGCCCGACCAGGCCATCCGCGACTTCCTCAAGATCCCACACGACGGCCTCGGCGGCGGCGACGGCAAGGGAGGGAGGATCCCCGCCGCCGCGGGCGCCTCCNGTGGCGGCGGTGGCGTCGGTGGCATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTACGCCGCGCCGCGAGCGCG TGGATGTCCGCGTCGCCCAAGCCCGCCGCGTCGAACAGCGGCGGCGGAGGCGGCGGCGGCGCGACGCTGAGCAGC AGCAACAGC GGCAGCAACC ACAGCAACAAGTACAACTACTCCCCCCGGGAGGCCGC GGCGGNGTTC TCGCGCACCTTCTCCCGCACGCGGTCGCTCCGCCCGACGCCGACCTTCTCGCGCGCCACCTCCACCCGC ]
[+] EMBL AK109460 [ AGACGCCACCTCCCCTTCCCACCACGCCATCACCACCACCACCACCACCTCACCGCCGCCTCGCACGCAGACGGCGAGGCTTCCGGCGCGGCGGCGGAAGAGTAGCGCGAGCGA G CTGAGAGATGGAGCGGCGGCCGGAGCTGCGGCGGACGATGACGCTCTCGGAGCAGCTGTCCGCGCCCGACCAGGCCATCCGCGACTTCCTCAAGATCCCACACGACGGCCTCGGCGGCGGCGACGGCGAGGGAGGGAGGATCCCCGCCGCCGCGGGCGCCTCCGGTGGCGGCGGTGGCGTCGGTGGCATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTACGCCGCGCCGCGAGCGCG TGGATGTCCGCGTCGCCCAAGCCCGCCGCGTCGAACAGCGGCGGCGGAGGCGGCGGCGGCGCGACGCTGAGCAGC AGCAACAGC GGCAGCAACC ACAGCAACAAGTACAACTACTCCCCCGGCGAGGCCGC GGCGGCGTTC TCGCGCACCTTCTCCCGCACGCGGTCGCTCCGCCCGACGCCGACCTTCTCGCGCGCCACCTCCACCCGCCTCGGAGCCACAGCCTTCTCCAGCGGCTCCAGGCGCGCCGCGGTCGACGGCGGCGGCCACGCCAATGAGGACGACGACGAGGACCACACCGACGACGACGACGACGACGACGAAGAGGAGCAAGGCAAGGACGACGCGCCCGCGGCGCAGATGTCGCTGATGGCGCTACTGGAGCAATCGGACAGCCAGTGGGACTCGGAGGACGAGGACGACCAAGGCCACGGCGGTGGCGGCGGCGGCGGGGGCAACGGCGGCGGCGGCGGCGGCGGCGGCGCGCGCAAG AACGGCGACGGCGACGACGACGAGGACGACGGCGAGGGGCGGGAGGAGGAGATGGTGCACGTGTGCTGCGTGTGCATGGTGCGCCACAAGGGCGCCGCCTTCAT CCCGTGCGG CCACACCTTCTGCCGCCTCTGCT CCCGCGAGCTCTGGGT CAGCCGCGGCAACTG CCCTCTCTGCAACGGTTT CAT CCAAGAAATCCTCGACATCTTCTAATCATCTTCTTCAGAATTCAGATGCAAACCAAGAAATCCT CGACATCTTCTAATCTTCTTCAGAATTCAGATG CAGATAGAACG ATCATGCAGCATGGCGGTAGTAGCTATAAGATTTGTTGGTTGGATTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCCGCTCCGCTGAAAATTAACCTGAAAAAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGCAACATGAAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCGGCACTGTCTCA ]
[+] EMBL AU091301 [ GCACGCAGACGGCGAGGCTTCCGGCGCGGCGGCGGAAGAGTAGCGCGA CAA GNCTGAGAGATGGAGCGGCGGCCGGAGCTGCGGCGGACGATGACGCTCTCGGAGCAGCTGTCCGCGCCCGACCAGGCCATCCGCGACTTCCTCAAGATCCCACACGACGGCCTCGGCGGCGGCGACGGCGAGGGAGGGAGGATCCCCGCCGCCGCGGGCGCCTCCGGTGGCGGCGGTGGCGTCGGTGGCATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTACGCCGCGCCGCGAGCGCG TGGATGTCCGCGTCGCCCAAGCCCGCCGCGTCGAACAGCGGCGGCGGAGGCGGCGGCGGCGCGACGCTGAGCAGCAAGCAACAGCGGGCAGCAACCAACAGCAACAAGTACAACTACTCCCCCGGCGAGGCCGCGGGCGGCGTTCTTCGCGCACCTTCT ]
[+] EMBL AU163430 [ GCACGCAGACGGCGAGGCTTCCGGCGCGGCGGCGGAAGANTAGCGCNA NAANG CTGAGAGATGGAGCGGCGNCCGGAGCTGCGGCGGACGATGACGCTCTCGGAGCAGCTGTCCGCGCCCNACCAGGCCATCCGCNACTTCCTNAAGATCCCACACGACGGCCTCGGCGGCGGCGACGGCGAGGGAGGGAGGATCCCCNCCGCCGCGGGCGCCTCCGGTGGCGNCGGTGGCGTCGGTGGCATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTACGACG ]
[+] EMBL AU162188 [ CGCAGACGGCGAGGCTTCCGGCGCGGCGGCGGAAGAGTAGCGCGA CAN G CTGAGAGATGGAGCGGCGGCCGGANCTGCGGCGGACGATGACGCTCTCGGAGCAGCTGTCCGCGCCCGACCAGGCCATCCGCGACTTCCTCAAGATCCCACACGACGGCCTCGGCGGCGGCGACGGCGAGGGAGGGAGGATCCCCGCCGCCGCGGGCGCCTCCGGTGGCGGCGGTGGCGTCGGTGGCATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTAC NCGCGCCGCGAGCGCGTTGGATGTCCGCGTCG CCAAGCCCGCCGCGTCGAANAG ]
[+] EMBL AU163699 [ AAGTACAACTACTCCCCCGGCGAGGCCGC GGCGGCGTTC TCGCGCACCTTCTCCCGCACGCGGTCGCTCCGCCCGACGCCGACCTTCTCGCGCGCCACCTCCACCCGCCTCGGAGCCACAGCCTTCTCCAGCGGCTCCAGGCGCGCCGCGGTCGACGGCGGCGGCCACGCCAATGAGGACGACGACGAGGACCACACCGACGACGACGACGACGACGACGAAGAGGAGCAAGGCAAGGACGACGCGCCCGCGGCGCAGATGTCGCTGATGGCGCTACTGGA CAATCGGACAGCCAGTGGGACTCGGAGGACGAGGA ]
[+] EMBL C98556 [ cCGGCGGCNGCGGCGCGCGCAAGAAACGGCGACGGCGACGACGACGAGGACGACGGCGAGGGGCGGGAGGNGGAGATGNTGCACGTGTGCTGCGTGTGCATGGTGCGCCACAAGGNCGCCGCCTTCAT CCCGTGCGG CCACACCTTCTGCCGCCTCTGCT CCCGCGAGCTCTGGGT CAGCCGCGGCAA TGCCCCTCTCTGCAACGGTTTCCATCCCAAG AATCCTCGACATCTTCTAATCATCTTCTTCAGAATTCAGATGCAAACCAAGAAATCCT CGACATCTTCTAATCTTCTTCAGAATTCAGATG CAGATAGAACG ATCATGCAGCATGGCGGTAGTAGCTATAAGATTTGTTGGTTGGATTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCCG TCCGCTGAAAATTAACCTGAAAAAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGCAACATGAAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCGGCACTGTCTCATTGATGAATTAAAAAA]
[+] EMBL AU163700 [ CAAG AACGGCGACGGCGACGACGACGAGGACGACGGCGAGGGGCGGGAGGAGGAGATGGTGCACGTGTGCTGCGTGTGCATGGTGCGCCACAAGGGCGCCGCCTTCAT CCCGTGCGG CCACACCTTCTGCCGCCTCTGCT CCCGCGAGCTCTGGGT CAGCCGCGGCAACTG CCCTCTCTGCAACGGTTT CAT CCAAGAAATCCTCGACATCTTCTAATCATCTTCTTCAGAATTCAGATGCAAACCAAGAAATCCT CGACATCTTCTAATCTTCTTCAGAATTCAGATG CAGATAGAACG ATCATGCAGCATGGCGGTAGTAGCTATAAGATTTGTTGGTTGGATTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCCGCTCCGCTGAAAATTAACCTGAAAAAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGCAACATGAAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCGGCACTGTCTCATTGATGAA AAAAAA]
[+] EMBL C98924 [ TCATCCCCGTGCGGCCCACACCTTCTNCCGCCTCTGCTCCCCGCGNGCTCTGGGTCCAGCCGCGGCAACTG CCCTCTCTGCAACGGTTT CAT CCAAGAAATCCTCGACATCTTCTAATCATCTTCTTCAGAATTCAGATGCAAACCAAGAAATCCT CGACATCTTCTAATCTTCTTCAGAATTCAGATG CAGATAGAACG ATCATGCAGCATGGCGGTNGTAGCTATAAGATTTGTTGGTTGGATTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCC CTCCGCTGAAAATTAACCTGAAAAAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGCAACATGAAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCGGCACTGTCTCATTGATGAA AAA ]
[+] EMBL C98618 [ TCCTNCGACATCTTCTAATCTTCTTCAGAATTCAGATGTCANATAGAACGNATCATGCAGCATGGCGGTAGTAGCTATAAGATTTGTTGGTTGGATTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCC CTCCGCTGAAAATTAACCTGANAAAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGNAACATGAAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCGGCACTGTCTCATTGATGAATTAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||