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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1510 fasta sequence
[GCGCGGCGCGCGCCCCGGCGCCGCCGCCGCGGCGGCGGCGGCGGCGGCGGACGCCGTGGCCGCCTCGGTCGCGTCGGGCGGGAAGAAGGGGAAGGCCGCCGTCGTGCTGCGGGTCCCCGCCGGGTCGCCGATCGTCGCCGCGAGGCGCCAGGCGTCGGCCCGCCGGGAGATCGCCGCGCGGCGGGCGCGCGAGGCCGGCCGCGAGTACGAGCTCATCCCCACCCACCGCGGCGAGACGCTGTTCACGCAGTGCTGGTGGCCTCACGGATCCTCCTCCGCCATTAAGCCGAGGGCGCTCGTCGTAGTCATGCACGGGTTGAACGAGCACAGTGGGAGATACGATCATCTAGCTAGGAGGTTGAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGGTCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAAGAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGGAGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGACAAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA-GGATGAGCATCCCGGCCTCCCGATGGTGATGACGCGGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTTGCTGTAGTACCA-GGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG-CA-GGGATACGCCTATGTAAGATTGTTCGTTTCG-CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC-AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAAAA]
[+] EMBL AK120822 [GCGCGGCGCGCGCCCCGGCGCCGCCGCCGCGGCGGCGGCGGCGGCGGCGGACGCCGTGGCCGCCTCGGTCGCGTCGGGCGGGAAGAAGGGGAAGGCCGCCGTCGTGCTGCGGGTCCCCGCCGGGTCGCCGATCGTCGCCGCGAGGCGCCAGGCGTCGGCCCGCCGGGAGATCGCCGCGCGGCGGGCGCGCGAGGCCGGCCGCGAGTACGAGCTCATCCCCACCCACCGCGGCGAGACGCTGTTCACGCAGTGCTGGTGGCCTCACGGATCCTCCTCCGCCATTAAGCCGAGGGCGCTCGTCGTAGTCATGCACGGGTTGAACGAGCACAGTGGGAGATACGATCATCTAGCTAGGAGGTTGAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGGTCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAAGAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGGAGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGACAAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA GGATGAGCATCCCGGCCTCCCAATGGTGATGACGCGGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTTGCTGTAGTACCA GGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTG ]
[+] EMBL CA767079 [ TCATCTAGCTAGGAGGTTGAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGGTCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAAGAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGGAGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCACCCTCGGACAAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATNCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA GGATGAGCATNCCGGCCTNCCGATGGNGATGACGCGGTCTTTGATCATCTGCAAANCCNAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGC ]
[+] EMBL AA752952 [ CATCNTTTNGAANGCTATGCTTGATCCANAAGTANATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATANCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCNAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGA AAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAAGATTTGACAGCTGATATCCATTCATANGACGCAGTCTGATCGTCCGCGGAACGCGGGGGCA GGATGANCATCCCGGGCTCCCGATGGTGATGAC CCGTCTTTGATC TCTG ]
[+] EMBL BI799861 [ CAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA GGATGAGCATCCCGGCCTCCCGATGGTGATGACGCGGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTTGCTGTAGTACCA GGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACACTCCGATGAGAGGAGACGTTTTCTGCGTTGC ATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAAAA]
[+] EMBL BM420387 [ GGAGC CCGGGGCACGGATGAGCATCCC GCCTCCCGATGGTGATGACNCGGTCTTTGATCATCTGCAGA CCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCCCGAGCCTTGCTTCTATCTATATTACGTGTTGCTGTAGTACCACGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTGCCACGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCCTGTGTGNCTGCATGTGTGGTGTCCCATAATTTAGATNCCTTTTACACTCCGATGAGAGGAGACGTTTTCTGCGTTCCNATGTAATCAGATTTTCCNCCCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAA ]
[+] EMBL C98730 [ TGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCNATGTAATCAGATTTTGC AGCNGAATATATTTGCNTGGATTGTCTGATGTGTAAAAAA ]
[+] EMBL AU161355 [ TTGTTTG CA GGGATACGCCTATGTAAGATTGTNCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAA ]
[+] EMBL AU093645 [ TTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAA ]
consensusID : consensus_12507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 332 fasta sequence
[GTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTAT-ATTACGTGTTGCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU163363 [GTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTAT ATTACGTGTTGCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTAAAAAAAAAAAAAAAAAAA]
[-] EMBL C74529 [ TGCTGCTNGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATAATTACGTGTTGCTGTAGTACCAGCCGATGATGGGTCGGCTAACAACTGTCGCCTCCCNTTGGTATCCCGGAATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12507#0 GCGCGGCGCGCGCCCCGGCGCCGCCGCCGCGGCGGCGGCGGCGGCGGCGGACGCCGTGGC 60
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 CGCCTCGGTCGCGTCGGGCGGGAAGAAGGGGAAGGCCGCCGTCGTGCTGCGGGTCCCCGC 120
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 CGGGTCGCCGATCGTCGCCGCGAGGCGCCAGGCGTCGGCCCGCCGGGAGATCGCCGCGCG 180
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 GCGGGCGCGCGAGGCCGGCCGCGAGTACGAGCTCATCCCCACCCACCGCGGCGAGACGCT 240
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 GTTCACGCAGTGCTGGTGGCCTCACGGATCCTCCTCCGCCATTAAGCCGAGGGCGCTCGT 300
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 CGTAGTCATGCACGGGTTGAACGAGCACAGTGGGAGATACGATCATCTAGCTAGGAGGTT 360
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 GAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGG 420
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 TCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAA 480
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 GAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGG 540
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 AGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTT 600
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 CCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCC 660
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 TGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACC 720
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 GGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGG 780
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 TTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCA 840
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 CTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGA 900
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 TCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGACAAGTCCCTCAATCT 960
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 GTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAA 1020
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 CATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTC 1080
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 TGATCGTCCGCGGAGCGCGGGGGCAGGATGAGCATCCCGGCCTCCCGATGGTGATGACGC 1140
consensus_12507#1 ------------------------------------------------------------
consensus_12507#0 GGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGC 1200
consensus_12507#1 ------------------------------------GTTGCTGCAAGCCTGCGATGCTGC 24
************************
consensus_12507#0 TGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTT 1260
consensus_12507#1 TGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTT 84
************************************************************
consensus_12507#0 GCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGG 1320
consensus_12507#1 GCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGG 144
************************************************************
consensus_12507#0 AATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCT 1380
consensus_12507#1 AATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCT 204
************************************************************
consensus_12507#0 GCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTC 1440
consensus_12507#1 GCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTC 264
************************************************************
consensus_12507#0 TGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTGTCTGATGTGT 1500
consensus_12507#1 TGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTAAAAAAAAAAA 324
************************************************* *
consensus_12507#0 AAAAAAAAAA 1510
consensus_12507#1 AAAAAAAA-- 332
********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||