These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1280 fasta sequence [TGGGCCCATCATCCACTCCGGCCCACGACGACCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGGAAGGCATACAACTTCCGTTGCAGTGAGCTGGTTGATTCAAGCTCAATCTGGATGCATGGTGCTTTGTCTACAACCCAATGTAGGCCGTGTGGCATGCCTGTTTATTCAGTGTCTAAAATTGCAAAGTTTTCTTCCCGTCGCCCAAAAGATTTAATTTTTTTCTACTTGCCCCTATCTCTGAACTGTGCTGTTTATAGTTTTTGCAGATGACTGAATACTAACCATTACCAATTTAATTAGCGTTGCTATGGATAGGACAACTGCCTCCAACTCCATGGAGTTGTGTTGATATGCAATCTTCCCCATCAATTGAAATGTGGTGGATTTAAACAAAAAAGAAAGAAAGAAACAAATGCACATCCATCTGAAAAACCCAGAAGGAAAATATTGTCATCTACAGAATTGCAGTCTGAAGATTTGCTGTTCTTTCTCTGCTGGAAAAGAAGCAGTGACAACAAGAAGCTGACACAAGCGTGCCTATGGTTAGGGAGATCCAAATTAGAGAAGAATGATTCTGAACTCTTCCCATGTCGGCATTAAACTACAATTCGACGGGGTTGATTAATCATCACTACAGAATCAAGTCGTGGCTTACTGGCATATCAAGAGGGGAAAAGGTGAATGGTTTGATACTTCGATGAAAACCACGCGGATTCCCCAGAAATAGTCCTCGTTACTCGTCAGGTGCACACGCTTACAGCACCAGTACTTCTGACATTGTGATTAGTTTCCATAGTCCCATGTCCTTGTTTTGATTTCTTTTTAAGGTAATGTGTTCTTGTTTTTCTATGGCAAACATGATAGGGGCATTCAAAACACCCTATGGTTTTCGAGCTTTCGACTTTTGATGCAACATAAGTAGGGTGTAGCTAAAATTAGTAAAGAC] [+] EMBL AK108690 [TGGGCCCATCATCCACTCCGGCCCACGACGACCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGGAAGGCATACAACTTCCGTTGCAGTGAGCTGGTTGATTCAAGCTCAATCTGGATGCATGGTGCTTTGTCTACAACCCAATGTAGGCCGTGTGGCATGCCTGTTTATTCAGTGTCTAAAATTGCAAAGTTTTCTTCCCGTCGCCCAAAAGATTTAATTTTTTTCTACTTGCCCCTATCTCTGAACTGTGCTGTTTATAGTTTTTGCAGATGACTGAATACTAACCATTACCAATTTAATTAGCGTTGCTATGGATAGGACAACTGCCTCCAACTCCATGGAGTTGTGTTGATATGCAATCTTCCCCATCAATTGAAATGTGGTGGATTTAAACAAAAAAGAAAGAAAGAAACAAATGCACATCCATCTGAAAAACCCAGAAGGAAAATATTGTCATCTACAGAATTGCAGTCTGAAGATTTGCTGTTCTTTCTCTGCTGGAAAAGAAGCAGTGACAACAAGAAGCTGACACAAGCGTGCCTATGGTTAGGGAGATCCAAATTAGAGAAGAATGATTCTGAACTCTTCCCATGTCGGCATTAAACTACAATTCGACGGGGTTGATTAATCATCACTACAGAATCAAGTCGTGGCTTACTGGCATATCAAGAGGGGAAAAGGTGAATGGTTTGATACTTCGATGAAAACCACGCGGATTCCCCAGAAATAGTCCTCGTTACTCGTCAGGTGCACACGCTTACAGCACCAGTACTTCTGACATTGTGATTAGTTTCCATAGTCCCATGTCCTTGTTTTGATTTCTTTTTAAGGTAATGTGTTCTTGTTTTTCTATGGCAAACATGATAGGGGCATTCAAAACACCCTATGGTTTTCGAGCTTTCGACTTTTGATGCAACATAAGTAGGGTGTAGCTAAAATTAGTAAAGAC] consensusID : consensus_12509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 997 fasta sequence [ACGAGGGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCATTTCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGNCGGCTCCGACGTCGTGCCGCCGCCACCTACAACGNCGACTGGNCGATCGGCGCGGACAGCTGGNCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTATCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGTCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTGGACATGTGTGGGCCGAACAGTAATAATAAGAGGCAGGAGCCAGCACCGCGTGATCGGGCAAGTTTTGATGACATAGTGCTTGGGAAACAATGTATACAGGGCTGTGTGTGGGGAGATATACGGAGAGCGGCACGCGACGCCTCGAGCGCCGGGCCCGAGGCGGTGGTCGGACGCAGACGCTGTACCGAACGAGTGCCGCTATGCAAGATCGCGCTCAAACAGCATACAGCACCCAAGCAAGCAGATATGATGACTGTCACAGCCTCCATCGCCCGCCCCTGGGCATGCCGCTGCACAGCCGGACCGTCCCGCGCATGCACCATCACTCGTGCCCCTATCCCCGCCCATTCATCGTTCCACACGCGATGGGTGGGCCCGTCATGCGCGCTTCCCCCCGCCAGCGCACCACACACACTACGCCTCCCATAGTATACGTGTGAGCGGCGACCATAGAAAGAGACAAGAGTAAGAATACTCGATTCGGACTCTCGCGCCCTC] [+] EMBL BE040721 [ACGAGGGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCATTTCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGNCGGCTCCGACGTCGTGCCGCCGCCACCTACAACGNCGACTGGNCGATCGGCGCGGACAGCTGGNCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTATCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGTCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTGGACATGTGTGGGCCGAACAGTAATAATAAGAGGCAGGAGCCAGCACCGCGTGATCGGGCAAGTTTTGATGACATAGTGCTTGGGAAACAATGTATACAGGGCTGTGTGTGGGGAGATATACGGAGAGCGGCACGCGACGCCTCGAGCGCCGGGCCCGAGGCGGTGGTCGGACGCAGACGCTGTACCGAACGAGTGCCGCTATGCAAGATCGCGCTCAAACAGCATACAGCACCCAAGCAAGCAGATATGATGACTGTCACAGCCTCCATCGCCCGCCCCTGGGCATGCCGCTGCACAGCCGGACCGTCCCGCGCATGCACCATCACTCGTGCCCCTATCCCCGCCCATTCATCGTTCCACACGCGATGGGTGGGCCCGTCATGCGCGCTTCCCCCCGCCAGCGCACCACACACACTACGCCTCCCATAGTATACGTGTGAGCGGCGACCATAGAAAGAGACAAGAGTAAGAATACTCGATTCGGACTCTCGCGCCCTC] consensusID : consensus_12509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence [TTATCTGTGGCCTTGTGATTGGATCCAGGTTGCCGGGCTCGCCTTTTCCGCCCCTATAAAACGCTCCTCGCGTTCCCCCTGTCTCCCCACAGCGATCTCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGGGGCACGAGCTACTTCATCTGCAGCTTCCTTCGGCCACTGTGGCGCAAGGATTGAAGATGGCCCTCACCCGCCGCTGAAAAGGAAGCCCACGCAGCAAAAAGCAAGGCCAGGCTGTTGCCGTTCAGCCTGGAGCTATCCTATTACATGTGTCCCCGACCGCATAATAGAGGCAGACCCGCACCGGTTATCCGCCAGGTTGGTTGGCTAATGCGTGGGAGACATATTACAGGCTTATTGTTGTTTTCAGGAGAGTCGTCCGGGGGATTATACGCCTCCCTCTTGATCTTGCCACTGGCAGTCGCTTCTCGAAACCTAAGGTTGGCGGGTGACAAAAAGCTAGAAGGCGGGGAGGCAGCTGGTGTTGAGCGATTTTGTCGCCGGGGGTCCCGGCCTTAGACGTTTGATTGCCTGCCCTCCCGCCTTGGTTGTTTGGTGCGCAGCGCTAGTCGGGAAACAGTCTGGAACCTGTGCGAGTGTGACCCCGCGCGC] [+] EMBL BE040691 [TTATCTGTGGCCTTGTGATTGGATCCAGGTTGCCGGGCTCGCCTTTTCCGCCCCTATAAAACGCTCCTCGCGTTCCCCCTGTCTCCCCACAGCGATCTCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAACGACCGCATCACGCTCGGCCGGGGCACGAGCTACTTCATCTGCAGCTTCCTTCGGCCACTGTGGCGCAAGGATTGAAGATGGCCCTCACCCGCCGCTGAAAAGGAAGCCCACGCAGCAAAAAGCAAGGCCAGGCTGTTGCCGTTCAGCCTGGAGCTATCCTATTACATGTGTCCCCGACCGCATAATAGAGGCAGACCCGCACCGGTTATCCGCCAGGTTGGTTGGCTAATGCGTGGGAGACATATTACAGGCTTATTGTTGTTTTCAGGAGAGTCGTCCGGGGGATTATACGCCTCCCTCTTGATCTTGCCACTGGCAGTCGCTTCTCGAAACCTAAGGTTGGCGGGTGACAAAAAGCTAGAAGGCGGGGAGGCAGCTGGTGTTGAGCGATTTTGTCGCCGGGGGTCCCGGCCTTAGACGTTTGATTGCCTGCCCTCCCGCCTTGGTTGTTTGGTGCGCAGCGCTAGTCGGGAAACAGTCTGGAACCTGTGCGAGTGTGACCCCGCGCGC] consensusID : consensus_12509#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence [TCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGTACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTCTCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGCCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTTACATGTGTCGCCCGAACAGCAATAATAAGAGGCAGCAGCCAGCACCGCGTCATTGTGCAGGTTTTGTTGTCATAGTGCGTCGCAAACAATATATACAGCCATATATGTGTGTTATGTAGGGAGAGTGGTAGGTGAGGCATGAGTGATGTGTGCTTGTATGTATTATCAGAAGTCAGGAGTTGATTACTAGTAAAGCACATCAGCTTGTTTG] [+] EMBL AK107381 [TCTCCGAACGAACACACAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCCTCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTTGCTCCTCGTGTGCCTCCTCGTCGGCTCCGACGTCGCCGCCGCCGCCACCTACAACGTCGACTGGTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTCCTTGTGTTCAGCTACGACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGTACGACCGCATCACGCTCGGCCGCGGCACGAGCTACTTCATCTGCAGCTTCTCCGGCCACTGTGGCGCAGGGATGAAGATGGCCGTCACCGCCAGCTGAAGAGGAAGCCAACGCAGCACAAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTTACATGTGTCGCCCGAACAGCAATAATAAGAGGCAGCAGCCAGCACCGCGTCATTGTGCAGGTTTTGTTGTCATAGTGCGTCGCAAACAATATATACAGCCATATATGTGTGTTATGTAGGGAGAGTGGTAGGTGAGGCATGAGTGATGTGTGCTTGTATGTATTATCAGAAGTCAGGAGTTGATTACTAGTAAAGCACATCAGCTTGTTTG] consensusID : consensus_12509#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 660 fasta sequence [CCAAGGGGGGCCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGG-GTGGAGCACTAC-CTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAATGCAGCTAGCTCTCTTTACATT-CCGCACTATTCTACAAGGAGATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAATTACCTTGGCTTGAGATAAAAAAAAAAAAA] [-] EMBL CA763636 [CCAAGGGGGGCCAACACCAAACAAACCTTAGCTAACCGGGGTCGCCGCCGCCGGAAGCCGTTCGCAGGCCCGCCCCAGATAAGGCAAACCCGCAGCACCTGTACCAAACAGGCTACCGATGGGAGAAGGCGAGACCACCAGCGGAGGAGGAGGAGGGTTCCGCGC CGGTGTGGAGCACTACTCTGTACAGCGGCGAGAAGAAGCATGTTGTTGCCGGCATCGCCATCTTCGCCGCCATCTTGGGCGTCCCCTGGTGCCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTATTTTGGACAGGCATGTTCGCCAAAAGAATGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAGTACAGCTAGCTCTCTTTACATTCCCGCACTATTTTACAAGGAGATGATTGCCAAAGCCAAACGCCTGATTTATTTGTTTCAAATGACGATTTTAGAGCCAATTACCTTGGCTTGAGATAAAAAAAAAAAAA] [+] EMBL CF300844 [ gacgaCCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGG GTGGAGCACTAC CTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTC ] [+] EMBL AK062903 [ CACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGG GTGGAGCACTAC CTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAATGCAGCTAGCTCTCTTTACATT CCGCACTATTCTACAAGGAGATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAATTACC ] [-] EMBL CF300843 [ ATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAATGCAGCTAGCTCTCTTTACATT CCGCACTATTCTACAAGGAGATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAAaaaaaa ] consensusID : consensus_12509#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TTCGGGCGACACATGTAAATATGTATAGCTACAGGCTAGAGCGGCAGCAGCCTGGCCCTGCTTTTGTGCTGCGTTGGCTTCCTCTTCAGCTGGCGGTGACGGCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAA] [-] EMBL CA998397 [TTCGGGCGACACATGTAAATATGTATAGCTACAGGCTAGAGCGGCAGCAGCCTGGCCCTGCTTTTGTGCTGCGTTGGCTTCCTCTTCAGCTGGCGGTGACGGCGGCGGCGGCGGAAGGCGGTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGATGGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCCGCGCGCGGGTGGAGCACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATTACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGCCAAAAGAGTGAAACAGTAATCCCCTAACTCAGATTTGCAAAACCTCAGGCCGACACAGCTATGATAATCTGAGAATTCGATCCTGTTGTGAAATAAGCAGACCATCTCGATTCTCATCTTTCAGTTGTAGGAAACATGGGTTGAATGTAATACGTCACATGAAATTTTGTCAAA] consensusID : consensus_12509#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [ACCACCGGTGTTAGCGGCGGCGGATTCCGCAGGCGGTTGGAGTACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTTCCCTGGTACTTCATGAGCCGAGGGACAAAGCATCAATCTCACCAAGATTACATGGAAAAAGCTAACAAGGCGAGGTCGGAGAGACTTTCTTCTGGACAGTCATCAGCACCAAAAGCATGAAGTAGTAATCCGTAACTCAGATCTGTGAAACCTCAGCATTCATAGTTTTGATCTATACTCTAGCTGAGCACTTTATCTATTGGGTGAAATAAGCAGGCCATCTCTTGAATATTGACCCTGATGACATGATCTTGTCAGTTTCAGAAACCATGTGTAAACTTCACATGAAATTTTGTCAAATGTAGCCTTTCTGTTCACTTTATGCGCAATTCTGTAGGAGATGATCAACAAGCACCAGATTTTTGTCTATCAAATATTCAAATGGTGG] [+] EMBL AK111355 [ACCACCGGTGTTAGCGGCGGCGGATTCCGCAGGCGGTTGGAGTACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCATCTTCGGCGTTCCCTGGTACTTCATGAGCCGAGGGACAAAGCATCAATCTCACCAAGATTACATGGAAAAAGCTAACAAGGCGAGGTCGGAGAGACTTTCTTCTGGACAGTCATCAGCACCAAAAGCATGAAGTAGTAATCCGTAACTCAGATCTGTGAAACCTCAGCATTCATAGTTTTGATCTATACTCTAGCTGAGCACTTTATCTATTGGGTGAAATAAGCAGGCCATCTCTTGAATATTGACCCTGATGACATGATCTTGTCAGTTTCAGAAACCATGTGTAAACTTCACATGAAATTTTGTCAAATGTAGCCTTTCTGTTCACTTTATGCGCAATTCTGTAGGAGATGATCAACAAGCACCAGATTTTTGTCTATCAAATATTCAAATGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 TTCGGGCGACACATGTAAATATGTATAGCTACAGGCTAGAGCGGCAGCAGCCTGGCCCTG 60 consensus_12509#0 ---------------------------------------TGGGCCCATCATCCACTCCGG 21 consensus_12509#1 ------------------------------------------------------------ consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 ------------------------TTATCTGTGGCCTTGTGATTGGATCCAGGTTGCCGG 36 consensus_12509#4 CCAAGGGGGGCCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCG 60 consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 CTTTTGTGCTGCGTTGGCTTCCTCTTCAGCTGGCGGTGACGGCGGCGGCGGCGGAAGGCG 120 consensus_12509#0 CCCACGACGACCAACACCAAACAAACCCTAGCTCACCGGCGTCGGCGGCGGCGGAAGGCG 81 consensus_12509#1 ------------------------------------------------------------ consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 GCTCGCCTTTTCCGCCCCTATAAAACGCTCCTCGCGTTCCCCCTGTCTCCCCACAGCGAT 96 consensus_12509#4 GTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGAT 120 consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 GTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGAT 180 consensus_12509#0 GTCGCCGGCACGCCACAGCAAAGGCAAACCCGCAGCAGCACGAACAAACAGGCGAGCGAT 141 consensus_12509#1 ----ACGAGGGAACACA-CAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCC 55 consensus_12509#3 -TCTCCGAACGAACACA-CAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCC 58 consensus_12509#2 CTCTCCGAACGAACACA-CAGGGTAGCGCTCGCGTAGTCGCGTACTCCCCGGCCTGCTCC 155 consensus_12509#4 GGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCC----GCGCGCGGGTGGAGC 176 consensus_12509#6 -------------ACCACCGGTGTTAGCGGCGGCGGATTCC----GCAGGCGGTTGGAGT 43 consensus_12509#5 GGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCC----GCGCGCGGGTGGAGC 236 consensus_12509#0 GGGAGGAGGCGAGGCCACCAGCGGAGGAGGAGGAGGGTTCC----GCGCGCGGGTGGAGC 197 consensus_12509#1 TCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCATTTCAGGGGCTCGCCCTCGGCTT 115 consensus_12509#3 TCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTT 118 consensus_12509#2 TCACACAGACGCGATGGCCCAGGGAAGAGGCAGTGCAGCGCAGGGGCTCGCCCTCGGCTT 215 ** * * ** * * * ** ** ** consensus_12509#4 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 236 consensus_12509#6 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 103 consensus_12509#5 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 296 consensus_12509#0 ACTACCTGTACAGCGGCGAGAAGAAGCACGTCGTCGCCGGCATCGCCATCTTCGCCGCCA 257 consensus_12509#1 GCTCCTCGTGTGCCTCCTCGNCGGCTC-CGACGTCGT-GCCGCCGCCACCTACAACGNCG 173 consensus_12509#3 GCTCCTCGTGTGCCTCCTCGTCGGCTC-CGACGTCGCCGCCGCCGCCACCTACAACGTCG 177 consensus_12509#2 GCTCCTCGTGTGCCTCCTCGTCGGCTC-CGACGTCGCCGCCGCCGCCACCTACAACGTCG 274 ** * ** * * * * * ** ***** * * ***** ** * ** * consensus_12509#4 TCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATT 296 consensus_12509#6 TCTTCGGCGTTCCCTGGTACTTCATGAGCCGAGGGACAAAGCATCAATCTCACCAAGATT 163 consensus_12509#5 TCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATT 356 consensus_12509#0 TCTTCGGCGTCCCCTGGTACCTCATGACCCGAGGGGCAAAGCATCAGTCGCACCAAGATT 317 consensus_12509#1 ACTG-GNCGATCGGCGCGGACAGCTGGNCCAAGGGCAAGAACTTCCGCGCCGGTGACGTC 232 consensus_12509#3 ACTG-GTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTC 236 consensus_12509#2 ACTG-GTCGTTCGGCGCGGACAGCTGGTCCAAGGGCAAGAACTTCCGCGCCGGTGACGTC 333 ** * ** * * ** ** **** * * * ** * * * consensus_12509#4 ACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGC 356 consensus_12509#6 ACATGGAAAAAGCTAACAAGGCGAGGTCGGAGAGACTTTCTTCTGGACAGTCATCAGCAC 223 consensus_12509#5 ACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGC 416 consensus_12509#0 ACATGGAAAGAGCTAACAAGGCGAGGTCGGAGAGGCTTTCTTCTGGACAGGCATCTTCGC 377 consensus_12509#1 -CTTGTGTTCAGCTAC---GACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGG 288 consensus_12509#3 -CTTGTGTTCAGCTAC---GACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGG 292 consensus_12509#2 -CTTGTGTTCAGCTAC---GACCCGTCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGG 389 * ** ***** * * * ** * * * * * * * * consensus_12509#4 CAAAAGAGTGAAACAGTAATCCCC--TAACTCAGATTTGCAAAACCTCAGGCCGACACAG 414 consensus_12509#6 CAAAAGCATGAAGTAGTAATCCG---TAACTCAGATCTGTGAAACCTCAG-CATTCATAG 279 consensus_12509#5 CAAAAGAGTGAAACAGTAATCCCC--TAACTCAGATTTGCAAAACCTCAGGCCGACACAG 474 consensus_12509#0 CAAAAGAGTGAAACAGGAAGGCATA-CAACTTCCGTTGCAGTGAGCT--GGTTGATTCAA 434 consensus_12509#1 CTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAAC---GACCGCATCAC 345 consensus_12509#3 CTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGTAC---GACCGCATCAC 349 consensus_12509#2 CTACAGCGGCTGCCGGGAGTCCGGCACCAAGTACAGCTCCGGGAAC---GACCGCATCAC 446 * * ** * * * * * * * consensus_12509#4 CTATGATA--------ATCTGAGAATTCGATCC-TGTTGTGAAATAAGCAGACCATCTC- 464 consensus_12509#6 TTTTGATCTATACTCTAGCTGAGCACTTTATCTATTGGGTGAAATAAGCAGGCCATCTCT 339 consensus_12509#5 CTATGATA--------ATCTGAGAATTCGATCC-TGTTGTGAAATAAGCAGACCATCTC- 524 consensus_12509#0 GCTCAATCTGGA----TGCATGGTGCTTTGTCTACAACCCAATGTAGGCCGTGTGGCAT- 489 consensus_12509#1 GCTCGGCCGCGG----CACGAGCTACTTCATCTGCAGCTTA-TCCGGCCACTGTGGCGC- 399 consensus_12509#3 GCTCGGCCGCGG----CACGAGCTACTTCATCTGCAGCTTC-TCCGGCCACTGTGGCGC- 403 consensus_12509#2 GCTCGGCCGGGG----CACGAGCTACTTCATCTGCAGCTTCCTTCGGCCACTGTGGCGC- 501 * * ** * * consensus_12509#4 --GATTCTCATCTTTCAG--------TTGTAGGAAACATGGGTTGAATGTAATACGTCAC 514 consensus_12509#6 TGAATATTGACCCTGATGACATGATCTTGTCAGTTTCAGAAACCATGTGTAA-ACTTCAC 398 consensus_12509#5 --GATTCTCATCTTTCAG--------TTGTAGGAAACATGGGTTGAATGTAATACGTCAC 574 consensus_12509#0 ----GCCTGTTTATTCAG------TGTCTAAAATTGCAAAGTTTTCTTCCCGTCGCCCAA 539 consensus_12509#1 -AGGGAT-GAAGATGGCC-------GTCACCGTCAGCTGAAGAGGAAGCCAACGCAGCAC 450 consensus_12509#3 -AGGGAT-GAAGATGGCC-------GTCACCGCCAGCTGAAGAGGAAGCCAACGCAGCAC 454 consensus_12509#2 -AAGGATTGAAGATGGCC-------CTCACCCGCCGCTGAAAAGGAAGCCCACGCAGCA- 552 * * * ** consensus_12509#4 ATGA---AATTTTGTCAAATGCAGCTAGCTCTCTTTACATTCCGCACTATTCTACAAGGA 571 consensus_12509#6 ATGA---AATTTTGTCAAATGTAGCCT-TTCTGTTCACTTTATGCGCAATTCTGTA-GGA 453 consensus_12509#5 ATGA---AATTTTGTCAAA----------------------------------------- 590 consensus_12509#0 AAGATTTAATTTTTTTCTACTTGCCCCTATCTCTGAACTGTGCTGTTTATAGTTTTTGCA 599 consensus_12509#1 AAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTGGACATGTGTGG 510 consensus_12509#3 AAAAGCAGGGCCAGGCTGCTGCCGCTCTAGCCTGTAGCTATACATATTT-ACATGTGTCG 513 consensus_12509#2 AAAAGCAAGGCCAGGCTGTTGCCGTTC-AGCCTGGAGCTAT-CCTATT--ACATGTGTC- 607 * * consensus_12509#4 GATGATTGACAAAGACAAACACCTGATTTATTTGTCTCAAATGACGATTCTAGAGCCAAT 631 consensus_12509#6 GATGATCAACAAG------CACCAGATTTTTGTCTATCAAAT----ATTCAAATGGTGG- 502 consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 GATGACTGAATACTAACCATTACCAATTTAATTAGCGTTGCTATGGATAGGACAACTGCC 659 consensus_12509#1 GCCGAACAGTAATAATAAGAGGCAGGAGCCAGCACCGCGTG-----ATCGGGCAAGTTTT 565 consensus_12509#3 CCCGAACAGCAATAATAAGAGGCAGCAGCCAGCACCGCGTC-----ATTGTGCAGGTTTT 568 consensus_12509#2 -CCCGACCGCA-TAATA-GAGGCAG--ACCCGCACCG-GTT-----ATCCGCCAGGTTG- 655 consensus_12509#4 TACCTTGGCTTGAGATAAAAAAAAAAAAA------------------------------- 660 consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 TCCAACTCCATGGAGTTGTGTTGATATGCAA--TCTTCCCCATCAATTGAAATGTGGTGG 717 consensus_12509#1 GATGACATAGTGCTTGGGAAACAATGTATA----CAGGGCTGTGTGTGGGGAGAT-ATAC 620 consensus_12509#3 GTTGTCATAGTGCGTCGCAAACAATATATA----CAGCCATATATGTGTGTT-AT-GTAG 622 consensus_12509#2 GTTGGC-TAATGCGTGGGAGACATATTACAGGCTTATTGTTGTTTTCAGGAGAGTCGTCC 714 consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 ATTTAAACAAAAAAGAAAGAAAGAAACAAATGCACATCCATCTGAAAAACCCAGAAGGAA 777 consensus_12509#1 GGAGAGCGGCACGCGACGCCTCGAGCGCCGGGCCCGAGGCGGTGGTCGGACGCAGACGCT 680 consensus_12509#3 GGAGAGTGGTAGGTGAGGCAT-GAGTGATGTGTGCTTGTATGTATT---ATCAGAAGTCA 678 consensus_12509#2 GGGGGATTATACGCCTCCCTCTTGAT--CTTGCCACTGGCAGTCGCT--TCTCGAAACCT 770 consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 AATATTGTCATCTACAGAATTGCAGTCTGAAGATTTGCTGTTCTTTCTCTGCTGGAAAAG 837 consensus_12509#1 GTACCGAACGAGTGCCGCTATGCAAGATCGCGCTCAAACAGCATACAGCACCCAAGCAAG 740 consensus_12509#3 GGAGTTGATTACTAGTAAAGCACATCAGCTTGTTTG------------------------ 714 consensus_12509#2 AAGGTTGGCGGGTGACAAAAAGCTAGAAGGCGGGGAGGCAGCTGGTGTTGAGCGATTTTG 830 consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 AAGCAGTGACAACAAGAAGCTGACACAAGCGTGCCTATGGTTAGGGAGATCCAAATTAGA 897 consensus_12509#1 CAGATATGATGACTG---TCACAGCCTCCATCGCCCGCCCCTGGGCAT--GCCGCTGCAC 795 consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 TCGCCGGGGGTCCCGGCCTTAGACGTTTGATTGCCTGCCCTCCCGCCTTGGTTGTTTGGT 890 consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 GAAGAATGATTCTGAACTCTTCCCATGTCGGCATTAAACTACAATTCGACGGGGTTGATT 957 consensus_12509#1 A-GCCGGACCGTCCCGCGCATGCACCATCACTCGTGCCCCTATCCCCGCCCATTCATCGT 854 consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 GCGCAGCGCTAGTCGGGAAACAGTCTGGAACCTGTGCGAGTGTGACCCCGCGCGC----- 945 consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 AATCATCACTACAGAATCAAGTCGTGGCTTACTGGCATATCAAGAGGGGAAAAGGTGAAT 1017 consensus_12509#1 TCCACACGCGATGGGTGGGCCCGTCATGCGCGCTTCCCCCCGCCAGCGCACCACACACAC 914 consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 ------------------------------------------------------------ consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 GGTTTGATACTTCGATGAAAACCACGCGGATTCCCCAGAAATAGTCCTCGTTACTCGTCA 1077 consensus_12509#1 TACGCCTCCCATAGTATACGTGTGAGCGGCGACCATAGAAAGAGACAAGAGTAAGAATAC 974 consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 ------------------------------------------------------------ consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 GGTGCACACGCTTACAGCACCAGTACTTCTGACATTGTGATTAGTTTCCATAGTCCCATG 1137 consensus_12509#1 TCGATTCGGACTCTCGCGCCCTC------------------------------------- 997 consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 ------------------------------------------------------------ consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 TCCTTGTTTTGATTTCTTTTTAAGGTAATGTGTTCTTGTTTTTCTATGGCAAACATGATA 1197 consensus_12509#1 ------------------------------------------------------------ consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 ------------------------------------------------------------ consensus_12509#4 ------------------------------------------------------------ consensus_12509#6 ------------------------------------------------------------ consensus_12509#5 ------------------------------------------------------------ consensus_12509#0 GGGGCATTCAAAACACCCTATGGTTTTCGAGCTTTCGACTTTTGATGCAACATAAGTAGG 1257 consensus_12509#1 ------------------------------------------------------------ consensus_12509#3 ------------------------------------------------------------ consensus_12509#2 ------------------------------------------------------------ consensus_12509#4 ----------------------- consensus_12509#6 ----------------------- consensus_12509#5 ----------------------- consensus_12509#0 GTGTAGCTAAAATTAGTAAAGAC 1280 consensus_12509#1 ----------------------- consensus_12509#3 ----------------------- consensus_12509#2 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||