cluster # 12514

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Oryza sativa
cluster # 12514 cluster # 12514 Sequences # 10 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12514#0 length = 1896 sequences # 5
consensus_12514#1 length = 405 sequences # 1

consensus_12514#2 length = 352 sequences # 2
consensus_12514#3 length = 179 sequences # 1
consensus_12514#4 length = 138 sequences # 1

consensusID : consensus_12514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1896
fasta sequence

                              [GCTGAACTTCGGTCTGGTGTTCGAGAAGGTCTACCAACCGATCTTGCTCGGCCTTTAGGAGTTGGACAGCGTGTCATAGCCTGTCATCCCAGAACAAGGGAGCTTCATGATGGGAATGTTCTGAATGTTGACCATAATCGTTGCCGGGTTCAATTTGATCGACCTGAACTGGGTGTTGAGTTTGTAATGGATATTGATTGTATGCCACTACATCCACTAGAAAATTTCCCAGAGTCTCTCAGACGGCAGAACATTGTTAACAAATATTACAATAGTTTCTCAGAAGCAAAATTCGAGGATCGGTCCAAAGAGTTAGGTACTGGAGGTCCAACAAGATTCACATCAAATGTGTGTTTTGATGGTGGTGATGCAACCTCCAACATACCTTCTAATTACCCAATAAATACTTTAATGAAGCAAGCAAAGGGTGACACGGTTGATTCAATTGCACAGGCCAAAGTTGCAGTAAATGAGGTTGCTGTTGCTGCTCAGCAGTCAATGTACAGTCAGCCGTGCACACTGTCACAGATACAGGAAAGAGAGGCTGATATAAGGGCTCTTGCTGAACTATCACGTGCTCTTGATAAAAAGGAAGCTTTGTTGGTAGAATTGAGGCACATGAACGAAGAGGTGTATGGAAGGCAAAAGGATGGAGAAGCTTTTAGAGATTTTGAGCACTTCAGAAAACAATATGCTATGGTGCTTGTACAGCTAAGAGATTCTAATGATCATGTGGCTTCAGCCTTGCTTTCTCTGCGGCAACGCAACACGTATCATGGGCATCCAGCACAATCATATCCTAAACCCATGGAAAATGGAGCCTTAACTGGCACACCAGACCTGTATAACCTTTTTGGCTATATTAATCAGGAATCTGGGTCCCAAGTGATGGAAGTTATTGAGACTTCGAGGTCCCGAGCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGTGTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAATCGCAGCACTGGCTCGGGTTCCAGTATACTAGGCATAAGACGGATACCTCCTGATTCTGGACAGGCCAATTCATCTCATCAAGATAACACCACATCTGGCCACTTTGATCCTGCAACAAATAACATTTCTAGTCCAAGATTGCCCAATGGTTGCGATTCTGAACCGCAATTTCCCTCAGAGTTGATTTCATCGTGTGTTGCTACGATCCTTATGATCCAGAACTGCACGGAAAAGCAGTACCATCCTGCCGAAGTCGCGCACATCCTGGATTCAGCGCTTTCGCGCCTACAGCCTTGCAGCTCACAAAATGTAACCATCTTCAGGGAGATCGAGATGTGCATGGGCATCATCAAAAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCTATACAAGATGTAACTTATTAGTCGTTATTTTTATA---TTGTTGTATCCTAGTTAGCCATATTAGTGAACTGTAAAAAATATTCATGCTGTCTATCTCTGGCTCGCTCTCTATTGCATCTTTTGCCAACTCCAAGCGGGAGCTTAGGCTTAAACGGTGGTTGTTAGGCAAACTGAAGATCATCATGGTAAGAGATGGTTGCATGTCGGTGTT-CCCAGTGTAGTTTTAGGCTTTGTATGGCAGCTAAAGATCCTGTCCCGATTTCTATGGGTAGGCTAGAATTTTGAACTAAATCCTAGCCTTTTCACATGGACGGGCTAGGATCGTGGCCCATCTGAACAAGGTCTAGGAGTTCACAAGGTGCTTGTTTAATGGTGAAAGTTCTAATAGTAACTACCTTGAGCATTACATATT]

[+] EMBL CB665886             [GCTGAACTTCGGTCTGGTGTTCGAGAAGGTCTACCAACCGATCTTGCTCGGCCTTTAGGAGTTGGACAGCGTGTCATAGCCTGTCATCCCAGAACAAGGGAGCTTCATGATGGGAATGTTCTGAATGTTGACCATAATCGTTGCCGGGTTCAATTTGATCGACCTGAACTGGGTGTTGAGTTTGTAATGGATATTGATTGTATGCCACTACATCCACTAGAAAATTTCCCAGAGTCTCTCAGACGGCAGAACATTGTTAACAAATATTACAATAGTTTCTCAGAAGCAAAATTCGAGGATCGGTCCAAAGAGTTAGGTACTGGAGGTCCAACAAGATTCACATCAAATGTGTGTTTTGATGGTGGTGATGCAACCTCCAACATACCTTCTAATTACCCAATAAATACTTTAATGAAGCAAGCAAAGGGTGACACGGTTGATTCAATTGCACAGGCCAAAGTTGCAGTAAATGAGGTTGCTGTTGCTGCTCAGCAGTCAATGTACAGTCAGCCGTGCACACTGTCACAGATACAGGAAAGAGAGGCTGATATAAGGGCTCTTGCTGAACTATCACGTGCTCTTGATAAAAAGGAAGCTTTGTTGGTAGAATTGAGGCACATGAACGAAGAGGTGTATGGAAGGCAAAAGGATGGAGAAGCTTTTAGAGATTTTGAGCACTTCAGAAAACAATATGCTATGGTGCTTGTACAGCTAAGAGATTCTAATGATCATGTGGCTTCAGCCTTGCTTTCTCTGCGGCAACGCAACACGTATCATGGGCATCCAGCACAATCATATCCTAAACCCATGGAAAATGGAGCCTTAACTGGCACACCAGACCTGTATAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB665887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGCACAATCATATCCTAAACCCATGGAAAATGGAGCCTTAACTGGCACACCAGACCTGTATAACCTTTTTGGCTATATTAATCAGGAATCTGGGTCCCAAGTGATGGAAGTTATTGAGACTTCGAGGTCCCGAGCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGTGTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAATCGCAGCACTGGCTCGGGTTCCAGTATACTAGGCATAAGACGGATACCTCCTGATTCTGGACAGGCCAATTCATCTCATCAAGATAACACCACATCTGGCCACTTTGATCCTGCAACAAATAACATTTCTAGTCCAAGATTGCCCAATGGTTGCGATTCTGAACCGCAATTTCCCTCAGAGTTGATTTCATCGTGTGTTGCTACGATCCTTATGATCCAGAACTGCACGGAAAAGCAGTACCATCCTGCCGAAGTCGCGCACATCCTGGATTCAGCGCTTTCGCGCCTACAGCCTTGCAGCTCACAAAATGTAACCATCTTCAGGGAGATCGAGATGTGCATGGGCATCATCAAAAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCTATACAAGATGTAACTTATTAGTCGTTATTTTTATA   TTGTTGTATCCTAGTTAGCCATATTAGTGAACTGTAAAAAATATTCATGCTGTCTATCTCTGGCTCGCT                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB665888             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTGTATAACCTTTTTGGCTATATTAATCAGGAATCTGGGTCCCAAGTGATGGAAGTTATTGAGACTTCGAGGTCCCGAGCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGTGTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAATCGCAGCACTGGCTCGGGTTCCAGTATACTAGGCATAAGACGGATACCTCCTGATTCTGGACAGGCCAATTCATCTCATCAAGATAACACCACATGTGGCCACTTTGATCCTGCAACAAATAACATTTGTAGTCCAAGATTGCCCAATGGTGGCGATTCTGAACTGCAATTTCCCTCAGAGTTGATTTCATCGTGTGTTGCTACGATCGTTATGATCCAGAACTGCACGGAAAAGCAGTACCATCCTGTCGAAGTGGTGCACATCATGGATTCAGCGCTTTGGGGCGTACAGCCTTGCAGCTCACAAAAGGTAGCCTTGTTCAGGGAGATCGAGATGTGCATGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB629224             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCATCTCATCAAGATAACACCACATCTGGCCACTTTGATCCTGCAACAAATAACATTTCTAGTCCAAGATTGCCCAATGGTTGCGATTCTGAACCGCAATTTCCCTCAGAGTTGATTTCATCGTGTGTTGCTACGATCCTTATGATCCAGAACTGCACGGAAAAGCAGTACCATCCTGCCGAAGTCGCGCACATCCTGGATTCAGCGCTTTCGCGCCTACAGCCTTGCAGCTCACAAAATGTAACCATCTTCAGGGAGATCGAGATGTGCATGGGCATCATCAAAAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCTATACAAGATGTAACTTATTAGTCGTTATTTTTATATTGTTGTTGTATCCTAGTTAGCCATATTAGTGAACTGTAAAAAATATTCATGCTGTCTATCTCTGGCTCGCTCTCTATTGCATCTTTTGCCAACTCCAAGCGGGAGCTTAGGCTTAAACGGTGGTTGTTAGGCAAACTGAAGATCATCATGGTAAGAGATGGTTGCATGTCGGTGTT CCCAGTGTAGTTTTAGGCTTTGTATGGCAGCTAAAGATCCTGTCCCGATTTCTATGGGTAGGCTAGAATTTTGAACTAAATCCTAGCCTTTTCACATGGACGGGCTAGGATCGTGGCCCATCTGAACAAGGTCTAGGAGTTCACAAGGTGCTTGTTTAATGGTGAAAGTTCTAATAGTAACTACCTTGAGCATTACATATT]
[-] EMBL CB637757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTGGCCACTTTGATCCTGCAACAAATAACATTTCTAGTCCAAGATTGCCCAATGGTTGCGATTCTGAACCGCAATTTCCCTCAGAGTTGATTTCATCGTGTGTTGCTACGATCCTTATGATCCAGAACTGCACGGAAAAGCAGTACCATCCTGCCGAAGTCGCGCACATCCTGGATTCAGCGCTTTCGCGCCTACAGCCTTGCAGCTCACAAAATGTAACCATCTTCAGGGAGATCGAGATGTGCATGGGCATCATCAAAAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCTATACAAGATGTAACTTATTAGTCGTTATTTTTATA   TTGTTGTATCCTAGTAAACCATATTAGTGAACTGTAAAAAATATTCATGCTGTCTATCTCTGGCTCGCTCTCTATTGCATCTTTTGCCAACTCCAAGCGGGAGCTTAGGCTTAAACGGTGGTTGTTAGGCAAACTGAAGATCGTCATGGTAAGAGATGGTTGCATGAAAGTGTTCCCCAGTG                                                                                                                                                                                                  ]




>consensus_12514#0
GCTGAACTTCGGTCTGGTGTTCGAGAAGGTCTACCAACCGATCTTGCTCGGCCTTTAGGA
GTTGGACAGCGTGTCATAGCCTGTCATCCCAGAACAAGGGAGCTTCATGATGGGAATGTT
CTGAATGTTGACCATAATCGTTGCCGGGTTCAATTTGATCGACCTGAACTGGGTGTTGAG
TTTGTAATGGATATTGATTGTATGCCACTACATCCACTAGAAAATTTCCCAGAGTCTCTC
AGACGGCAGAACATTGTTAACAAATATTACAATAGTTTCTCAGAAGCAAAATTCGAGGAT
CGGTCCAAAGAGTTAGGTACTGGAGGTCCAACAAGATTCACATCAAATGTGTGTTTTGAT
GGTGGTGATGCAACCTCCAACATACCTTCTAATTACCCAATAAATACTTTAATGAAGCAA
GCAAAGGGTGACACGGTTGATTCAATTGCACAGGCCAAAGTTGCAGTAAATGAGGTTGCT
GTTGCTGCTCAGCAGTCAATGTACAGTCAGCCGTGCACACTGTCACAGATACAGGAAAGA
GAGGCTGATATAAGGGCTCTTGCTGAACTATCACGTGCTCTTGATAAAAAGGAAGCTTTG
TTGGTAGAATTGAGGCACATGAACGAAGAGGTGTATGGAAGGCAAAAGGATGGAGAAGCT
TTTAGAGATTTTGAGCACTTCAGAAAACAATATGCTATGGTGCTTGTACAGCTAAGAGAT
TCTAATGATCATGTGGCTTCAGCCTTGCTTTCTCTGCGGCAACGCAACACGTATCATGGG
CATCCAGCACAATCATATCCTAAACCCATGGAAAATGGAGCCTTAACTGGCACACCAGAC
CTGTATAACCTTTTTGGCTATATTAATCAGGAATCTGGGTCCCAAGTGATGGAAGTTATT
GAGACTTCGAGGTCCCGAGCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGT
GTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAAT
CGCAGCACTGGCTCGGGTTCCAGTATACTAGGCATAAGACGGATACCTCCTGATTCTGGA
CAGGCCAATTCATCTCATCAAGATAACACCACATCTGGCCACTTTGATCCTGCAACAAAT
AACATTTCTAGTCCAAGATTGCCCAATGGTTGCGATTCTGAACCGCAATTTCCCTCAGAG
TTGATTTCATCGTGTGTTGCTACGATCCTTATGATCCAGAACTGCACGGAAAAGCAGTAC
CATCCTGCCGAAGTCGCGCACATCCTGGATTCAGCGCTTTCGCGCCTACAGCCTTGCAGC
TCACAAAATGTAACCATCTTCAGGGAGATCGAGATGTGCATGGGCATCATCAAAAACCAA
ATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATG
TATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCTATACAAGATGTAAC
TTATTAGTCGTTATTTTTATATTGTTGTATCCTAGTTAGCCATATTAGTGAACTGTAAAA
AATATTCATGCTGTCTATCTCTGGCTCGCTCTCTATTGCATCTTTTGCCAACTCCAAGCG
GGAGCTTAGGCTTAAACGGTGGTTGTTAGGCAAACTGAAGATCATCATGGTAAGAGATGG
TTGCATGTCGGTGTTCCCAGTGTAGTTTTAGGCTTTGTATGGCAGCTAAAGATCCTGTCC
CGATTTCTATGGGTAGGCTAGAATTTTGAACTAAATCCTAGCCTTTTCACATGGACGGGC
TAGGATCGTGGCCCATCTGAACAAGGTCTAGGAGTTCACAAGGTGCTTGTTTAATGGTGA
AAGTTCTAATAGTAACTACCTTGAGCATTACATATT

consensusID : consensus_12514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [TCGTNGTATATGGTTGACCATAATCGTTGCCGGGTTCAATTTGATCGACCTGAACTGGGTGTTGAGTTTGTAATGGATATTGATTGTATGCCACTACATCCACTAGAAAATTTCCCAGAGTCTCTCAGACGGCAGAACATTGTTAACAAATATTACAATAGTTTCTCAGAAGCAAAATTCGAGGATCGGTCCAAAGAGTTAGGTACTGGAGGTCCAACAAGATTCACATCAAATGTGTGTTTTGATGGTGGTGATGCAACCTCCAACATACCTTCTAATTACCCAATAAATACTTTAATGAAGCAAGCAAAGGGNTGACACGGGTGATTCAATTGCACAGGCCNAAGTTGCAGTAAATGAGGGTGCTGTTGCTGCTCAGCAGTCCAATGGACAGCNAGCCGGGCA]

[+] EMBL C73043               [TCGTNGTATATGGTTGACCATAATCGTTGCCGGGTTCAATTTGATCGACCTGAACTGGGTGTTGAGTTTGTAATGGATATTGATTGTATGCCACTACATCCACTAGAAAATTTCCCAGAGTCTCTCAGACGGCAGAACATTGTTAACAAATATTACAATAGTTTCTCAGAAGCAAAATTCGAGGATCGGTCCAAAGAGTTAGGTACTGGAGGTCCAACAAGATTCACATCAAATGTGTGTTTTGATGGTGGTGATGCAACCTCCAACATACCTTCTAATTACCCAATAAATACTTTAATGAAGCAAGCAAAGGGNTGACACGGGTGATTCAATTGCACAGGCCNAAGTTGCAGTAAATGAGGGTGCTGTTGCTGCTCAGCAGTCCAATGGACAGCNAGCCGGGCA]




>consensus_12514#1
TCGTNGTATATGGTTGACCATAATCGTTGCCGGGTTCAATTTGATCGACCTGAACTGGGT
GTTGAGTTTGTAATGGATATTGATTGTATGCCACTACATCCACTAGAAAATTTCCCAGAG
TCTCTCAGACGGCAGAACATTGTTAACAAATATTACAATAGTTTCTCAGAAGCAAAATTC
GAGGATCGGTCCAAAGAGTTAGGTACTGGAGGTCCAACAAGATTCACATCAAATGTGTGT
TTTGATGGTGGTGATGCAACCTCCAACATACCTTCTAATTACCCAATAAATACTTTAATG
AAGCAAGCAAAGGGNTGACACGGGTGATTCAATTGCACAGGCCNAAGTTGCAGTAAATGA
GGGTGCTGTTGCTGCTCAGCAGTCCAATGGACAGCNAGCCGGGCA

consensusID : consensus_12514#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [GCACAGGAAACCACAGTACACATCCTGCCGAAGNTCGCGGCACATCCTGGATTCAGCGGCTTTCGCAGCCTACAGCCTTGCAGCTCACCAAAATGTAACCATNTTCAGGGAGATCGAGATGTGCATGGGCATCATCAAAAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCTATACAAGATGTAACTTATTAGTCGTTATTTTTATATTGTTGTATCCTAGTTAGCCCATATTAGTGAACTGTAAAAAATATTCATGCTGTCAAAAAAAAAAA]

[-] EMBL BM422144             [GCACAGGAAACCACAGTACACATCCTGCCGAAGNTCGCGGCACATCCTGGATTCAGCGGCTTTCGCAGCCTACAGCCTTGCAGCTCACCAAAATGTAACCATNTTCAGGGAGATCGAGATGTGCATGGGCATCATC                                                                                                                                                                                                                        ]
[+] EMBL AU085914             [                                                                     CTACAGCCTTGCAGCTCA CAAAATGTAACCATCTTCAGGGAGATCGAGATGTGCATGGGCATCATCAAAAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTCCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCTATACAAGATGTAACTTATTAGTCGTTATTTTTATATTGTTGTATCCTAGTTAGCCCATATTAGTGAACTGTAAAAAATATTCATGCTGTCAAAAAAAAAAA]




>consensus_12514#2
GCACAGGAAACCACAGTACACATCCTGCCGAAGNTCGCGGCACATCCTGGATTCAGCGGC
TTTCGCAGCCTACAGCCTTGCAGCTCACCAAAATGTAACCATNTTCAGGGAGATCGAGAT
GTGCATGGGCATCATCAAAAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCT
CCTTGGCCTGCACATCATATGTATGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAA
TTTTGCAGTCTATACAAGATGTAACTTATTAGTCGTTATTTTTATATTGTTGTATCCTAG
TTAGCCCATATTAGTGAACTGTAAAAAATATTCATGCTGTCAAAAAAAAAAA

consensusID : consensus_12514#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [CTTATTATGTCGTTATGTTTTATATTTGGTTGGTGTGGTATCCTAGTTAGCCATATTAGTGGAAGCTGTAAAAAATGATGTCATGCTGGTCTATTCTNTGGCTCGCTNTNTATTGCATCTTTTGCCAACTCCAAGCGGGAGCTTATGGCTTAAACGGTGGTTGTTAGGCCAAAAAAAAA]

[+] EMBL BM419559             [CTTATTATGTCGTTATGTTTTATATTTGGTTGGTGTGGTATCCTAGTTAGCCATATTAGTGGAAGCTGTAAAAAATGATGTCATGCTGGTCTATTCTNTGGCTCGCTNTNTATTGCATCTTTTGCCAACTCCAAGCGGGAGCTTATGGCTTAAACGGTGGTTGTTAGGCCAAAAAAAAA]




>consensus_12514#3
CTTATTATGTCGTTATGTTTTATATTTGGTTGGTGTGGTATCCTAGTTAGCCATATTAGT
GGAAGCTGTAAAAAATGATGTCATGCTGGTCTATTCTNTGGCTCGCTNTNTATTGCATCT
TTTGCCAACTCCAAGCGGGAGCTTATGGCTTAAACGGTGGTTGTTAGGCCAAAAAAAAA

consensusID : consensus_12514#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [GCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGTGTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAATTCCGTACTGGCTCGGAAGCTATTCCCAAAGTGAGGT]

[-] EMBL BU672989             [GCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGTGTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAATTCCGTACTGGCTCGGAAGCTATTCCCAAAGTGAGGT]




>consensus_12514#4
GCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGTGTGAGTGAAGGAGAGGAT
GCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAATTCCGTACTGGCTCGGAAG
CTATTCCCAAAGTGAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GCTGAACTTCGGTCTGGTGTTCGAGAAGGTCTACCAACCGATCTTGCTCGGCCTTTAGGA 60
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GTTGGACAGCGTGTCATAGCCTGTCATCCCAGAACAAGGGAGCTTCATGATGGGAATGTT 120
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CTGAATGTTGACCATAATCGTTGCCGGGTTCAATTTGATCGACCTGAACTGGGTGTTGAG 180
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TTTGTAATGGATATTGATTGTATGCCACTACATCCACTAGAAAATTTCCCAGAGTCTCTC 240
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      AGACGGCAGAACATTGTTAACAAATATTACAATAGTTTCTCAGAAGCAAAATTCGAGGAT 300
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CGGTCCAAAGAGTTAGGTACTGGAGGTCCAACAAGATTCACATCAAATGTGTGTTTTGAT 360
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GGTGGTGATGCAACCTCCAACATACCTTCTAATTACCCAATAAATACTTTAATGAAGCAA 420
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GCAAAGGGTGACACGGTTGATTCAATTGCACAGGCCAAAGTTGCAGTAAATGAGGTTGCT 480
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GTTGCTGCTCAGCAGTCAATGTACAGTCAGCCGTGCACACTGTCACAGATACAGGAAAGA 540
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GAGGCTGATATAAGGGCTCTTGCTGAACTATCACGTGCTCTTGATAAAAAGGAAGCTTTG 600
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TTGGTAGAATTGAGGCACATGAACGAAGAGGTGTATGGAAGGCAAAAGGATGGAGAAGCT 660
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TTTAGAGATTTTGAGCACTTCAGAAAACAATATGCTATGGTGCTTGTACAGCTAAGAGAT 720
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TCTAATGATCATGTGGCTTCAGCCTTGCTTTCTCTGCGGCAACGCAACACGTATCATGGG 780
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CATCCAGCACAATCATATCCTAAACCCATGGAAAATGGAGCCTTAACTGGCACACCAGAC 840
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CTGTATAACCTTTTTGGCTATATTAATCAGGAATCTGGGTCCCAAGTGATGGAAGTTATT 900
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GAGACTTCGAGGTCCCGAGCAAAATTGATGGTTGATGTTGCTATTCAGGCAATGTGCAGT 960
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      GTGAGTGAAGGAGAGGATGCTTATGCCAAAGTAGGGGAGGCACTCGATAATCTGAACAAT 1020
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CGCAGCACTGGCTCGGGTTCCAGTATACTAGGCATAAGACGGATACCTCCTGATTCTGGA 1080
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CAGGCCAATTCATCTCATCAAGATAACACCACATCTGGCCACTTTGATCCTGCAACAAAT 1140
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      AACATTTCTAGTCCAAGATTGCCCAATGGTTGCGATTCTGAACCGCAATTTCCCTCAGAG 1200
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      -----------------------------------------GCACAGGAAACCACAGTAC 19
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TTGATTTCATCGTGTGTTGCTACGATCCTTATGATCCAGAACTGCACGGAAAAGCAGTAC 1260
consensus_12514#1      ----------------------------------TCGTNGTATATGGTTGACCATAATCG 26
                                                                                   

consensus_12514#2      ACATCCTGCCGAAGNTCG-CGGCACATCCTGGATTCAGCGGCTTTCGCAGCCTACAGCCT 78
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      -CATCCTGCCGAAGTCG---CGCACATCCTGGATTCAGCG--CTTTCGCGCCTACAGCCT 1314
consensus_12514#1      TTGCCGGGTTCAATTTGATCGACCTGAACTGGGTGTTGAGTTTGTAATGGATATTGATTG 86
                                                                                   

consensus_12514#2      TGCAGCTCACCAAAATGTAACCATNTTCAGGGAGATCGAGATGTGCATGGGCATCATCAA 138
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TGCAGCTCAC-AAAATGTAACCATCTTCAGGGAGATCGAGATGTGCATGGGCATCATCAA 1373
consensus_12514#1      TATGCCACTACATCCACTAGAAAATTTCCCAGAGTCTCTCAGACGGCAGAACATTGTTAA 146
                                                                                   

consensus_12514#2      AAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTC--CTTGGCCTGCACATC 196
consensus_12514#3      ---------------CTTATTATGTCGTTATGTTTTATATTTG--GTTGGTGTG-GTATC 42
consensus_12514#4      ---------------------------GCAAAATTGATGGTTGATGTTGCTATTCAGGCA 33
consensus_12514#0      AAACCAAATGCTGGCGTTGATACCCACCCCAAGTGGCTAGCTC--CTTGGCCTGCACATC 1431
consensus_12514#1      CAAATAT-TACAATAGTTTCTCAGAAGCAAAATTCGAGGATCGGTCCAAAGAGTTAGGTA 205
                                                        *                          

consensus_12514#2      ATA----TGTA-TGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCT 251
consensus_12514#3      CTA----GTTA-GCCATATTA-GTGGAAGCTGTAAAA----AATGATGTCATGCTGGTCT 92
consensus_12514#4      ATG----TGCAGTGTGAGTGAAGGAGAGGATGCTTATGCC-AAAGTAGGGGAGGCACTCG 88
consensus_12514#0      ATA----TGTA-TGTATGTCGCGTGCAACTTTTTTAATTCTAATTTTAATTTTGCAGTCT 1486
consensus_12514#1      CTGGAGGTCCAACAAGATTCACATCAAATGTGTGTTTTGATGGTGGTGATGCAACCTCCA 265
                        *        *       *       *   *                           * 

consensus_12514#2      ATACAAGATGTAACTTATTAGTCGTTATTTTTATATTGTTGTATCCTAGTTAGCCCATAT 311
consensus_12514#3      ATTC----TNTGGCTCGCTNTNTATTGCATCTT--TTGCCAACTCCAAGCGGGAGCTTAT 146
consensus_12514#4      ATAA----TCTGAACAATTCCGTACTGGCTCGG--AAGCTATTCCCAAAGTGAGGT---- 138
consensus_12514#0      ATACAAGATGTAACTTATTAGTCGTTATTTTTATATTGTTGTATCCTAGTTAGC-CATAT 1545
consensus_12514#1      ACATACCTTCTAATTACCCAATAAATACTTTAATGAAGCAAGCAAAGGGNTGACACGGGT 325
                       *       * *              *   *       *                      

consensus_12514#2      TAGTGAACTGTAAAAAATATTCATGCTGTCAAAAAAAAAAA------------------- 352
consensus_12514#3      GGCT------TAAACGGTGGTTGTTAGGCCAAAAAAAAA--------------------- 179
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TAGTGAACTGTAAAAAATATTCATGCTGTCTATCTCTGGCTCGCTCTCTATTGCATCTTT 1605
consensus_12514#1      GATTCAATTGCACAGGCCNAAGTTGCAGTAAATGAGGGTGCTGTTGCTGCTCAGCAGTCC 385
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TGCCAACTCCAAGCGGGAGCTTAGGCTTAAACGGTGGTTGTTAGGCAAACTGAAGATCAT 1665
consensus_12514#1      AATGGACAGCNAGCCGGGCA---------------------------------------- 405
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CATGGTAAGAGATGGTTGCATGTCGGTGTTCCCAGTGTAGTTTTAGGCTTTGTATGGCAG 1725
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      CTAAAGATCCTGTCCCGATTTCTATGGGTAGGCTAGAATTTTGAACTAAATCCTAGCCTT 1785
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ------------------------------------------------------------
consensus_12514#3      ------------------------------------------------------------
consensus_12514#4      ------------------------------------------------------------
consensus_12514#0      TTCACATGGACGGGCTAGGATCGTGGCCCATCTGAACAAGGTCTAGGAGTTCACAAGGTG 1845
consensus_12514#1      ------------------------------------------------------------
                                                                                   

consensus_12514#2      ---------------------------------------------------
consensus_12514#3      ---------------------------------------------------
consensus_12514#4      ---------------------------------------------------
consensus_12514#0      CTTGTTTAATGGTGAAAGTTCTAATAGTAACTACCTTGAGCATTACATATT 1896
consensus_12514#1      ---------------------------------------------------