cluster # 12515

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Oryza sativa
cluster # 12515 cluster # 12515 Sequences # 10 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12515#0 length = 780 sequences # 10
consensusID : consensus_12515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 780
fasta sequence
                              [GGTTTGAATCCCNTCCAGCGTCGGGAGGATGGCGGCGACGNTGAACGAGCTCGTCGTGCTCAA-TTCC-GGCGTGCGGTCCTGNATCCCGCCGG-AGATC-GGCCACCTCGGGGAGTTCACCGTGCTCGACGTCAGCAACAACCAGNTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT-NTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA-TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC--AAAAAAATGTTTGTTTGTCTGTTTGTTGGGTATTTTCGTATATACTATAGTAGTTAATTAGTAAAAAAAA]

[+] EMBL AU032129             [GGTTTGAATCCCNTCCAGCGTCGGGAGGATGGCGGCGACGNTGAACGAGCTCGTCGTGCTCAA TTCC GGCGTGCGGTCCTGNATCCCGCCGG AGATC GGCCACCTCGGGGAGTTCACCGTGCTCGACGTCAGCAACAACCAGNTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT NTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTACTGATAAAAAa                                                              ]
[+] EMBL AU092661             [                                                 CTCGTCGTGCTCAACTTCCGGGCGTCCGGTCCTGCATCCCGCCGGAAGATCGGGCCACCTCGGGAAGCTCACCGTGCTCGACGTCAGCACCAACCAGCTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCTGCTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAATTTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA  AAA                                                                   ]
[+] EMBL C22351               [                                                                                                                                                                                                                                                                                    ACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT NTTCGCGCCGCCGGNCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC  AAAAA                                                                 ]
[+] EMBL AU181509             [                                                                                                                                                                                                                                                                                               TACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCTGCTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA  AAAAAAA                                                               ]
[+] EMBL C22382               [                                                                                                                                                                                                                                                                                                                                                       GAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT GTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC  TGATCATTGTTTGTTTGTCTGTTTGTTGGGTATTTTCGTATATACTATAGTAGTTAATTAGTAAAAAAAA]
[+] EMBL AU097014             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCANTCAATCAAGCNTCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTNTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC  TGATCATTGTTTGTTaaaaaaa                                                ]
[+] EMBL AU161882             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA  AAAA                                                                  ]
[-] EMBL AI978384             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGT                                                                               ]
[+] EMBL AU095461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTGTTTTCTTNTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA  AAAAA                                                                 ]
[+] EMBL AI978383             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACT                                                                           ]




>consensus_12515#0
GGTTTGAATCCCNTCCAGCGTCGGGAGGATGGCGGCGACGNTGAACGAGCTCGTCGTGCT
CAATTCCGGCGTGCGGTCCTGNATCCCGCCGGAGATCGGCCACCTCGGGGAGTTCACCGT
GCTCGACGTCAGCAACAACCAGNTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCG
GTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGAT
CTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCC
GGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCC
CGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGA
CGCCCACGGCTNTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACT
CCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACT
CAATCAAGCATCGTATATATATACACTGTAATTTTTTTTCTTCTTCTTATTCTCTTTGGA
TTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAAT
GGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTACAAAAAAATGT
TTGTTTGTCTGTTTGTTGGGTATTTTCGTATATACTATAGTAGTTAATTAGTAAAAAAAA
clustalw multiple alignements is not computed in this case