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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 863 fasta sequence
[CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG-TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTCTACTGTGATTTAAAAAAAAAAAAAA]
[+] EMBL AK100260 [CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGT ]
[+] EMBL AK107735 [ ACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTGCGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCAT CATTAATAATACATGTAAGAATAAAGTTTCTACTGTGATTT ]
[+] EMBL AU162028 [ AGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGNAATCCTACCTGTTTCAAAGC ]
[+] EMBL BE229983 [ AGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCACCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTAT ]
[+] EMBL BE229973 [ AGCCAGAGTTGAGAGTTCGGTGGATCTCCCTTCGCTCGCCACGTGGC CCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCATGACGAGGTGGTGCGCACCATCATCAAGCGCGTTCCGCCCTCCTCCCCGGCGCTTCTACCCAACTACCACAGGGTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATG ]
[+] EMBL BE229886 [ AGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCATTCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGCAGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAAAAATTTCCTT ]
[+] EMBL AU174388 [ AGAGTTCGTTCCATCTCCCTTCGCTCGCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCACCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTCGTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCCTCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCTGCAATCCTACCTG TTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGATGCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGACAAGAGTTGAGATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGT ]
[+] EMBL AA753342 [ gagTTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCTAACAGCCTGAATCCAAGTCCAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACCACGACGACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAAT ]
[+] EMBL AU161859 [ CAGGGTTGAAACCTNCCAATCATTCATGCAGGAAATCNAACAGCCTGGGNCGNCGACGNCGACGNCCCAGGTTGAGATTTGAAGGACTNCATTGCAATATTCGCCAATAGCCGATATATATAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATNTCCTCGAGAGTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTNTACTAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[GAGCTCGTGCCGAATTCGGCACGAGCAAGAGTTGAGATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGCNGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAAAGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTCCAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGACGACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATATNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT]
[+] EMBL BE228839 [GAGCTCGTGCCGAATTCGGCACGAGCAAGAGTTGAGATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGCNGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAAAGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTCCAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGACGACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATATNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12526#0 CACACACGCACAAGAATCGAGTGAGCCAGAGTTGAGAGTTCGTTCCATCTCCCTTCGCTC 60
consensus_12526#1 ------------------------------------------------------------
consensus_12526#0 GCCACGTGGCAGCCGCTAGTCCTTATCGCCGCCGCCGCCCACCTCGCCATGGCGCCGCCA 120
consensus_12526#1 ------------------------------------------------------------
consensus_12526#0 CCCGCCGCCGCCGCCGCCGTGGACGGAGTCGGGGTCGGGGTCGGGGCGCACAGCGTGTTC 180
consensus_12526#1 ------------------------------------------------------------
consensus_12526#0 GTGTACGGGAGCCTGATGCAGGACGAGGTGGTGCGCACCATCATCAAGCGCGTCCCGCCC 240
consensus_12526#1 ------------------------------------------------------------
consensus_12526#0 TCCTCCCCGGCGCTCCTCCCCAACTACCACAGGTTCAACATCAAGGGTAGGATTTATCCT 300
consensus_12526#1 ------------------------------------------------------------
consensus_12526#0 GCAATCCTACCTGTTCAAAGCAAGAAAGTTGCTGGCAAGGTCATCACCGGTGTTACTGAT 360
consensus_12526#1 ------------------------------------------------------------
consensus_12526#0 GCAGAGCTCCAGATTCTGGATGAATTTGAAGATGTGGAGTACGTGAGGA-CAAGAGTTGA 419
consensus_12526#1 ---------------------GAGCTCG----TGCCGAATTCGGCACGAGCAAGAGTTGA 35
** * * ** ** * ** * ** **********
consensus_12526#0 GATATCATTAACTGATACTTCAGAGACAATGCTTGCTGACACCTATGTATGGGCTGATGC 479
consensus_12526#1 GATATCATTAACTGATACTTCNNAGACNATGCTTGCTGACTCCTATGTATGGGCTGATGC 95
********************* **** ************ *******************
consensus_12526#0 AGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAGGAATGGAAGAGGTTGCACATGAA 539
consensus_12526#1 NGAGGATCCAAATCTTTATGGTGAATGGGATTTTGAAGAATGGAAGAAGTTGCCCATGAA 155
*********************************** ********** ***** ******
consensus_12526#0 AGATTTCCTTGCGATGACCCACGGGTTCATGGATGGCCTCGAACAGCCTGAATCCAAGTC 599
consensus_12526#1 AGATTTCCTTGCGATGACCCNCGGGTTCATGGATGGCCTCGAACAGCCTGAATCCNAGTC 215
******************** ********************************** ****
consensus_12526#0 CAGGGTTGAAACCTACCAATCATTCATGCAGGAAATCCAACAGCCTGGGACGACGACGAC 659
consensus_12526#1 CAGGGTTGAAACCTACCAATCATTCNTGCAGGAAATCCAACNGCCTGGGACGACGACGAC 275
************************* *************** ******************
consensus_12526#0 GACGACCCAGGTTGAGATTTGAAGGACTACATTGCAATATTCGCCAATAGCCGATATATA 719
consensus_12526#1 GACGACCCCNGTTGAGATTTGAAGGACTACATTGCAATATTCGCCNATAGCCGATATATA 335
******** *********************************** **************
consensus_12526#0 TAGTGAAATGGCAGTTCGCTGTATTAGCATGTTAGTATGAAATAACCCATCTCCTCGAGA 779
consensus_12526#1 TNGTGAAATGGCAGTTCGCTGTATTANCNTGTTNGTATGAAAT----------------- 378
* ************************ * **** *********
consensus_12526#0 GTGTAATCTTTATACTTTATAGCATCATCCATTAATAATACATGTAAGAATAAAGTTTCT 839
consensus_12526#1 ------------------------------------------------------------
consensus_12526#0 ACTGTGATTTAAAAAAAAAAAAAA 863
consensus_12526#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||