cluster # 1253

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Oryza sativa
cluster # 1253 cluster # 1253 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1253#0 length = 516 sequences # 1

consensus_1253#1 length = 475 sequences # 1

consensusID : consensus_1253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [TGTGGGTGGCNGAGGCATCGAGTGCGAGCCGGANCTGNCGGATCTGGNCCGGAGGGCCCGGTCCTCAAGAACCGCGGCGTCACGGATGGGTGGTGGACCGGACGGTGCCAGACCTCANCTCCNACAGCCGCGAGATCAAGTTCNCGGTCAAGGCGCAGGTGCTCANAGAGACAGAGCCCGGCAAGAAGCCGCNCNTCTCGAGGGAGAAGNAGGAGGCCNAGTNTTCGNCGCCCNCCCTGCCGNTTCNAGGTCCGCCGATGGCCCNAGGCTGAAAAGTCCAAGNATGTGTCCGNNGAANCTNCGGCGACCGGTGCCAAGGATGAGTTGTAAAGNANATAGTGTTTTTGCGAGTGTGNTCTNACCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTANTNGCAGANGGTTCGGGCAGTTCCTTGTATTTGGTCACCGGGNTATANATTAAATTATCACCCTCNCTATTATATAA]

[+] EMBL AT003759             [TGTGGGTGGCNGAGGCATCGAGTGCGAGCCGGANCTGNCGGATCTGGNCCGGAGGGCCCGGTCCTCAAGAACCGCGGCGTCACGGATGGGTGGTGGACCGGACGGTGCCAGACCTCANCTCCNACAGCCGCGAGATCAAGTTCNCGGTCAAGGCGCAGGTGCTCANAGAGACAGAGCCCGGCAAGAAGCCGCNCNTCTCGAGGGAGAAGNAGGAGGCCNAGTNTTCGNCGCCCNCCCTGCCGNTTCNAGGTCCGCCGATGGCCCNAGGCTGAAAAGTCCAAGNATGTGTCCGNNGAANCTNCGGCGACCGGTGCCAAGGATGAGTTGTAAAGNANATAGTGTTTTTGCGAGTGTGNTCTNACCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTANTNGCAGANGGTTCGGGCAGTTCCTTGTATTTGGTCACCGGGNTATANATTAAATTATCACCCTCNCTATTATATAA]




>consensus_1253#0
TGTGGGTGGCNGAGGCATCGAGTGCGAGCCGGANCTGNCGGATCTGGNCCGGAGGGCCCG
GTCCTCAAGAACCGCGGCGTCACGGATGGGTGGTGGACCGGACGGTGCCAGACCTCANCT
CCNACAGCCGCGAGATCAAGTTCNCGGTCAAGGCGCAGGTGCTCANAGAGACAGAGCCCG
GCAAGAAGCCGCNCNTCTCGAGGGAGAAGNAGGAGGCCNAGTNTTCGNCGCCCNCCCTGC
CGNTTCNAGGTCCGCCGATGGCCCNAGGCTGAAAAGTCCAAGNATGTGTCCGNNGAANCT
NCGGCGACCGGTGCCAAGGATGAGTTGTAAAGNANATAGTGTTTTTGCGAGTGTGNTCTN
ACCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCAT
CTAAATTATCAGGTATTTANTNGCAGANGGTTCGGGCAGTTCCTTGTATTTGGTCACCGG
GNTATANATTAAATTATCACCCTCNCTATTATATAA

consensusID : consensus_1253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CCTCAAAGGACGCNGGGCGTCACGGGCTGGGTGGTGGACCCGGGANCGGTNGCCAGACCTTNGGACTCCNGACAGCCCGCGAGATCAAAGTTCACGGTCAAGGCGCAGGTGCTCAGAGAGACCGAGGCCGGCAAGAAGGCGCGCGTCGCGAGGGAGAAGGAGGAGGCCGAGGCTTCGGCGGCCGCCCTGGCCGCTTCGAGGTCCGCCGATGGTGCCGAGGCTGAAAAGTCCAAGGATGTGGCCGACGAAGCTGCGGCGACCGGTGCCAAGGATGAGTTGTAAAGGAGATAGTGTTTTTGCGAGTGTGGTCTCGCCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTCGTTGCAGAGGGTTCGGGCAGTTCCTTGNATTTGGTCACCGGGCTATATATTAAATTATACCCTCACTATTATATAAAAAAAAAA]

[+] EMBL AT003614             [CCTCAAAGGACGCNGGGCGTCACGGGCTGGGTGGTGGACCCGGGANCGGTNGCCAGACCTTNGGACTCCNGACAGCCCGCGAGATCAAAGTTCACGGTCAAGGCGCAGGTGCTCAGAGAGACCGAGGCCGGCAAGAAGGCGCGCGTCGCGAGGGAGAAGGAGGAGGCCGAGGCTTCGGCGGCCGCCCTGGCCGCTTCGAGGTCCGCCGATGGTGCCGAGGCTGAAAAGTCCAAGGATGTGGCCGACGAAGCTGCGGCGACCGGTGCCAAGGATGAGTTGTAAAGGAGATAGTGTTTTTGCGAGTGTGGTCTCGCCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGGGGGCAAATGCATCTAAATTATCAGGTATTTCGTTGCAGAGGGTTCGGGCAGTTCCTTGNATTTGGTCACCGGGCTATATATTAAATTATACCCTCACTATTATATAAAAAAAAAA]




>consensus_1253#1
CCTCAAAGGACGCNGGGCGTCACGGGCTGGGTGGTGGACCCGGGANCGGTNGCCAGACCT
TNGGACTCCNGACAGCCCGCGAGATCAAAGTTCACGGTCAAGGCGCAGGTGCTCAGAGAG
ACCGAGGCCGGCAAGAAGGCGCGCGTCGCGAGGGAGAAGGAGGAGGCCGAGGCTTCGGCG
GCCGCCCTGGCCGCTTCGAGGTCCGCCGATGGTGCCGAGGCTGAAAAGTCCAAGGATGTG
GCCGACGAAGCTGCGGCGACCGGTGCCAAGGATGAGTTGTAAAGGAGATAGTGTTTTTGC
GAGTGTGGTCTCGCCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGTGG
GGGCAAATGCATCTAAATTATCAGGTATTTCGTTGCAGAGGGTTCGGGCAGTTCCTTGNA
TTTGGTCACCGGGCTATATATTAAATTATACCCTCACTATTATATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1253#0      TGTGGGTGGCNGAGGCATCGAGTGCGAGCCGGANCTGNCGGATCTGGNCCGGAGGGCCCG 60
consensus_1253#1      ------------------------------------------------------------
                                                                                  

consensus_1253#0      GTCCTCAAGAACCGCGG--CGTCACGGA-TGGGTGGTGGACC---GGACGGTG-CCAGAC 113
consensus_1253#1      --CCTCAAAGGACGCNGGGCGTCACGGGCTGGGTGGTGGACCCGGGANCGGTNGCCAGAC 58
                        ******    *** *  ********  *************   *  ****  ******

consensus_1253#0      CTCAN---CTCCNACAGCC-GCGAGATCAA-GTTCNCGGTCAAGGCGCAGGTGCTCANAG 168
consensus_1253#1      CTTNGGACTCCNGACAGCCCGCGAGATCAAAGTTCACGGTCAAGGCGCAGGTGCTCAGAG 118
                      **        *  ****** ********** **** ********************* **

consensus_1253#0      AGACAGAGCCCGGCAAGAAGCCGCNCNTCTCGAGGGAGAAGNAGGAGGCCNAGTNTTCGN 228
consensus_1253#1      AGACCGAGGCCGGCAAGAAGGCGCGCGTCGCGAGGGAGAAGGAGGAGGCCGAGGCTTCGG 178
                      **** *** *********** *** * ** *********** ******** **  **** 

consensus_1253#0      CGCCCNCCCTG-CCGNTTCNAGGTCCGCCGATGGC-CCNAGGCTGAAAAGTCCAAGNATG 286
consensus_1253#1      CGGCCGCCCTGGCCGCTTCGAGGTCCGCCGATGGTGCCGAGGCTGAAAAGTCCAAGGATG 238
                      ** ** ***** *** *** **************  ** ***************** ***

consensus_1253#0      TGTCCGNNGAANCTNCGGCGACCGGTGCCAAGGATGAGTTGTAAAGNANATAGTGTTTTT 346
consensus_1253#1      TGGCCGACGAAGCTGCGGCGACCGGTGCCAAGGATGAGTTGTAAAGGAGATAGTGTTTTT 298
                      ** ***  *** ** ******************************* * ***********

consensus_1253#0      GCGAGTGTGNTCTNACCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGT 406
consensus_1253#1      GCGAGTGTGGTCTCGCCTACATATTTTTTGGTGTCTTTCTTTTCCTTGTTATCTTAGTGT 358
                      ********* ***  *********************************************

consensus_1253#0      GGGGGCAAATGCATCTAAATTATCAGGTATTTANTNGCAGANGGTTCGGGCAGTTCCTTG 466
consensus_1253#1      GGGGGCAAATGCATCTAAATTATCAGGTATTTCGTTGCAGAGGGTTCGGGCAGTTCCTTG 418
                      ********************************  * ***** ******************

consensus_1253#0      TATTTGGTCACCGGGNTATANATTAAATTATCACCCTCNCTATTATATAA-------- 516
consensus_1253#1      NATTTGGTCACCGGGCTATATATTAAATTAT-ACCCTCACTATTATATAAAAAAAAAA 475
                       ************** **** ********** ****** ***********