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Oryza sativa
cluster # 12530 cluster # 12530       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12530#0 length = 2276 sequences # 8  
 consensus_12530#1 length = 664 sequences # 1  
consensus_12530#2 length = 181 sequences # 1  
consensusID : consensus_12530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2276
fasta sequence 
                              [AGAATTGGCGAAACCCTAGCAGCAGATTGCCCCGCCATGCTCTGAGCCCGCCGACGATGGCCGCGCCGGGGCCGGGGTGGGTGGTGCCGCCGCCGCCGCAGCCGCAGCCGCAGCAGCAGCAGCAGGCGGTGGTGGTGGACGGCCGGGACGGCCTCGTCGCGTGGCTGCGCGGCGAGTTCGCGGCGGCCAACGCCATCATCGACCTCCTCCTCGCCCACGCCCGCGACGCCGCCGATCCCGCCGGGTTCGACGCCGTTGCCGCCGCCGTCCAGCGCAGGCGGCACCACTGGGCCCCCGTCCTCCACCTCCAGCATTACTTCCCCGTCACCGAGGTCGCCCTCGCGCTTCACCACGCCGCCGCGCGCCAGGGGCCGCCGCCTCCTCCTCCGCCGCCGCGCCCCCCGAGCGGTAGCGCCGGTGCCGAGGGAGATGATGCTGCGATTGCCAGTGGAGGTGTGAAGGAAGTGGAGACATCGGCTGAAGCAACTCAGAATTCTCAGTTGGTTTCTCATATTTCACATGCTACAGAAGCCCAACCTCAGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGTGGTTAATGAAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAAAGGGTATGTAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGACTATGCGGCGTAAACCAGGACTGGA---AGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAAGGGTCATGGAAGAGAAATTATTCAGCTTGGTCTTCCCATCACAGAAGGCCCTCCTGAAGATGAACATTTAAGAGAGGTAAAGGTGGATCCTATTCCTGGTGTGCTTCAAAATCTGTTTGATAGCTTGGTTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAATGAGGGAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACACTCTGCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGCGATCATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGAAAGAGCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTAAGTTTTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACTCCCCCATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCAATTCATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGCAGTTTCAACCCCTGGACTTCACCATATTCCATCCAATGGC-ATCCAGACAGTTTTCGTTGCACCACTTCCTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACAGCCGCATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGTACAGGGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTAAAACATGCTGATGCTAAACCA-TTTTTTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTACA-GGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTATATATGTCATCTTTGTTGCATAACGAATCTGAAATTTGCATCCTAAAAAAAAAAAAA]

[+] EMBL AK121038             [AGAATTGGCGAAACCCTAGCAGCAGATTGCCCCGCCATGCTCTGAGCCCGCCGACGATGGCCGCGCCGGGGCCGGGGTGGGTGGTGCCGCCGCCGCCGCAGCCGCAGCCGCAGCAGCAGCAGCAGGCGGTGGTGGTGGACGGCCGGGACGGCCTCGTCGCGTGGCTGCGCGGCGAGTTCGCGGCGGCCAACGCCATCATCGACCTCCTCCTCGCCCACGCCCGCGACGCCGCCGATCCCGCCGGGTTCGACGCCGTTGCCGCCGCCGTCCAGCGCAGGCGGCACCACTGGGCCCCCGTCCTCCACCTCCAGCATTACTTCCCCGTCACCGAGGTCGCCCTCGCGCTTCACCACGCCGCCGCGCGCCAGGGGCCGCCGCCTCCTCCTCCGCCGCCGCGCCCCCCGAGCGGTAGCGCCGGTGCCGAGGGAGATGATGCTGCGATTGCCAGTGGAGGTGTGAAGGAAGTGGAGACATCGGCTGAAGCAACTCAGAATTCTCAGTTGGTTTCTCATATTTCACATGCTACAGAAGCCCAACCTCAGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGTGGTTAATGAAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAAAGGGTATGTAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGACTATGCGGCGTAAACCAGGACTGGA   AGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAAGGGTCATGGAAGAGAAATTATTCAGCTTGGTCTTCCCATCACAGAAGGCCCTCCTGAAGATGAACATTTAAGAGAGGTAAAGGTGGATCCTATTCCTGGTGTGCTTCAAAATCTGTTTGATAGCTTGGTTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAATGAGGGAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACACTCTGCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGCGATCATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGAAAGAGCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTAAGTTTTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACTCCCCCATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCAATTCATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGCAGTTTCAACCCCTGGACTTCACCATATTCCATCCAATGGC ATCCAGACAGTTTTCGTTGCACCACTTCCTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACAGCCGCATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGTACAGGGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTAAAACATGCTGATGCTAAACCA TTTTTTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTACA GGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTATATATGTCATCTTTGTTGCAT                                    ]
[+] EMBL CF304586             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGGAAGTGGAGACATCGGCTGAAGCAACTCAGAATTCTCAGTTGGTTTCTCATATTTCACATGCTACAGAAGCCCAACCTCAGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGTGGTTAATGAAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAAAGGGTATGTAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGACTATGCGGCGTAAACCAGGACTGGAAGCAGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAAGGGTCATGGAAGAGAAATTATTCAGCTTGGTCTTGCCATCACAGAAGGCCCTCCTGAAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK060266             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTTCTCATATTTCACATGCTACAGAAGCCCAACCTCAGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGTGGTTAATGAAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAAAGGGTATGTAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGACTATGCGGCGTAAACCAGGACTGGA   AGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAAGGGTCATGGAAGAGAAATTATTCAGCTTGGTCTTCCCATCACAGAAGGCCCTCCTGAAGATGAACATTTAAGAGAGGTAAAGGTGGATCCTATTCCTGGTGTGCTTCAAAATCTGTTTGATAGCTTGGTTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAATGAGGGAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACACTCTGCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGCGATCATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGAAAGAGCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTAAGTTTTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACTCCCCCATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCAATTCATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGCAGTTTCAACCCCTGGACTTCACCATATTCCATCCAATGGC ATCCAGACAGTTTTCGTTGCACCACTTCCTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACAGCCGCATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGTACAGGGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTAAAACATGCTGATGCTAAACCATTTTTTTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTACA GGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTATATATGTCATCTTTGTTGCATAACGAATCTGAAA                       ]
[+] EMBL CA755122             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATTCCTGGTGTGCTTCAAAATCTGTTTGATAGCTTGGTTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAATGAGGGAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACACTCTGCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGCGATCATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGAAAGAGCGCTGATATAGCANAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTAAGTTTTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACTCCCCCATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCAGTTCATCCCTCAGGTCCTAAACAGCTTGTCTACNACCCTAGCAATAGAGTACCTGCAGTTTCAACCCCTGGACTTCACCATATTCCATCCGATGGCNATCCAGACGGTGTTCGTTGCACCACTTCCTATCAt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB000204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCTTCAAAATCTGTTTGATAGCTTGGTTCATCCCTAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAATGAGGGAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACACTCTGCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGCGATCATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGAAAGAGCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTAAGTTTTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACTCCCCCATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCAATTCATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGCAGTTTCAACCCCTGGACTTCACCATATTCCATCCAATGGC ATCCAGACAGTTTTCGTTGCACCACTTCCTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACAGCCGCATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGTACAGGGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTAAAACATGCTGATGCTAAACCA TTTTTTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAAGAAAGATGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF313396             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCAATAGAGTACCTGCAGTTTCAACCCCTGGACTTCACCATATTCCATCCAATGGC ATCCATACAGTTTTCGTTGCACCACTTCCTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACAGCCGCATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGTACAGGGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTAAAACATGCTGATGCTAAACCA TTTTTTCCACAAGAATCATCTGCCCCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTACAGGGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGC                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CF313397             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTACA GGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATTTTCTTTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTATATATGTCATCTTTGTTGCACAACGAATTTGAAATTTGCATCCTAAAAAAAAAAAAA]
[+] EMBL CA998444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTACA GGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGC                                                                                                                                                                           ]




>consensus_12530#0
AGAATTGGCGAAACCCTAGCAGCAGATTGCCCCGCCATGCTCTGAGCCCGCCGACGATGG
CCGCGCCGGGGCCGGGGTGGGTGGTGCCGCCGCCGCCGCAGCCGCAGCCGCAGCAGCAGC
AGCAGGCGGTGGTGGTGGACGGCCGGGACGGCCTCGTCGCGTGGCTGCGCGGCGAGTTCG
CGGCGGCCAACGCCATCATCGACCTCCTCCTCGCCCACGCCCGCGACGCCGCCGATCCCG
CCGGGTTCGACGCCGTTGCCGCCGCCGTCCAGCGCAGGCGGCACCACTGGGCCCCCGTCC
TCCACCTCCAGCATTACTTCCCCGTCACCGAGGTCGCCCTCGCGCTTCACCACGCCGCCG
CGCGCCAGGGGCCGCCGCCTCCTCCTCCGCCGCCGCGCCCCCCGAGCGGTAGCGCCGGTG
CCGAGGGAGATGATGCTGCGATTGCCAGTGGAGGTGTGAAGGAAGTGGAGACATCGGCTG
AAGCAACTCAGAATTCTCAGTTGGTTTCTCATATTTCACATGCTACAGAAGCCCAACCTC
AGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGTGGTTAATG
AAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAAAGGGTATG
TAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGACTATGCGGC
GTAAACCAGGACTGGAAGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAAGGGTCATG
GAAGAGAAATTATTCAGCTTGGTCTTCCCATCACAGAAGGCCCTCCTGAAGATGAACATT
TAAGAGAGGTAAAGGTGGATCCTATTCCTGGTGTGCTTCAAAATCTGTTTGATAGCTTGG
TTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAATGAGG
GAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACACTCT
GCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGCGATC
ATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGAAAGA
GCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTAAGTT
TTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACTCCCC
CATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCAATTC
ATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGCAGTTTCAA
CCCCTGGACTTCACCATATTCCATCCAATGGCATCCAGACAGTTTTCGTTGCACCACTTC
CTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACAGCCG
CATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGTACAG
GGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTAAAAC
ATGCTGATGCTAAACCATTTTTTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTG
CTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGG
CTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCA
AGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCT
CTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTAC
AGGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCA
CGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAAC
TGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTAT
GATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCA
TTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTAT
ATATGTCATCTTTGTTGCATAACGAATCTGAAATTTGCATCCTAAAAAAAAAAAAA

consensusID : consensus_12530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence 
                              [TTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGGCGAAGTGGTTACAGGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGCTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTAGATATGTCATCTTTGTTGCATAACGAATCTGAAATTTGCATCCTACCGTGGGAGATGTGTTTGTCATTTAATGATCCGACAATAATTG]

[-] EMBL CB634077             [TTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGGCTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGGCGAAGTGGTTACAGGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGCTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTAGATATGTCATCTTTGTTGCATAACGAATCTGAAATTTGCATCCTACCGTGGGAGATGTGTTTGTCATTTAATGATCCGACAATAATTG]




>consensus_12530#1
TTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTGCTCGTGCACATAAGGCTAATG
GTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGGCTGAAGCTAAGCCAAAGTGCA
ATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCAAGGCAACTGGAGGTTTAGAGG
AGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCTCTGTTATCTTAAAAGTAGATA
GCTGAAGATATTGAAATTTCTTTTTGGCGAAGTGGTTACAGGAGTTTCCAAACACAGGCT
ATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCACGACAGCGTGATGCTCAAGAT
CAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAACTGCACTCACCACACAACTTCA
TCTTCTCTACGGCGTCATTAGAGCAGCGGGACCAATTATGATGCTTTTTTTTTGGTCAGA
GCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCCATTTGCTCATGGAGTGCAATTTGA
GGAGAAATTCGAAAGAAAATTTTGTATATGATGCTAGATATGTCATCTTTGTTGCATAAC
GAATCTGAAATTTGCATCCTACCGTGGGAGATGTGTTTGTCATTTAATGATCCGACAATA
ATTG

consensusID : consensus_12530#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence 
                              [CCGCCCACGCGTCCGCATTATGATGCTTTTTTTTTTGGTCAGAGCTTAAGCATCATTTTTGTATGTTATGACCTCCCATTTGCTCATTGGAGTGCCATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTATATATGTCATCTTNGTGCATACCGAATCNGAAATTGCACCAAA]

[+] EMBL BM420756             [CCGCCCACGCGTCCGCATTATGATGCTTTTTTTTTTGGTCAGAGCTTAAGCATCATTTTTGTATGTTATGACCTCCCATTTGCTCATTGGAGTGCCATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCTATATATGTCATCTTNGTGCATACCGAATCNGAAATTGCACCAAA]




>consensus_12530#2
CCGCCCACGCGTCCGCATTATGATGCTTTTTTTTTTGGTCAGAGCTTAAGCATCATTTTT
GTATGTTATGACCTCCCATTTGCTCATTGGAGTGCCATTTGAGGAGAAATTCGAAAGAAA
ATTTTGTATATGATGCTATATATGTCATCTTNGTGCATACCGAATCNGAAATTGCACCAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12530#0      AGAATTGGCGAAACCCTAGCAGCAGATTGCCCCGCCATGCTCTGAGCCCGCCGACGATGG 60
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CCGCGCCGGGGCCGGGGTGGGTGGTGCCGCCGCCGCCGCAGCCGCAGCCGCAGCAGCAGC 120
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      AGCAGGCGGTGGTGGTGGACGGCCGGGACGGCCTCGTCGCGTGGCTGCGCGGCGAGTTCG 180
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CGGCGGCCAACGCCATCATCGACCTCCTCCTCGCCCACGCCCGCGACGCCGCCGATCCCG 240
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CCGGGTTCGACGCCGTTGCCGCCGCCGTCCAGCGCAGGCGGCACCACTGGGCCCCCGTCC 300
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      TCCACCTCCAGCATTACTTCCCCGTCACCGAGGTCGCCCTCGCGCTTCACCACGCCGCCG 360
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CGCGCCAGGGGCCGCCGCCTCCTCCTCCGCCGCCGCGCCCCCCGAGCGGTAGCGCCGGTG 420
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CCGAGGGAGATGATGCTGCGATTGCCAGTGGAGGTGTGAAGGAAGTGGAGACATCGGCTG 480
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      AAGCAACTCAGAATTCTCAGTTGGTTTCTCATATTTCACATGCTACAGAAGCCCAACCTC 540
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      AGAAAGGACTTCATGTAATCAGTAATGTGGTTCCAGTCCCAACTTGCTTTGTGGTTAATG 600
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      AAGTAATTGATGGCAGGATGGTGAATGTTCTAGAGGGGCTTAAGTTGTATAAAGGGTATG 660
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      TAGATCTAACTGAGATAGGAAAGGTTCTTTCTTTTGTGAATGAAGCTAAGACTATGCGGC 720
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      GTAAACCAGGACTGGAAGGGCAAACAGTTGTAGTTGCCAAAAGGCCAATGAAGGGTCATG 780
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      GAAGAGAAATTATTCAGCTTGGTCTTCCCATCACAGAAGGCCCTCCTGAAGATGAACATT 840
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      TAAGAGAGGTAAAGGTGGATCCTATTCCTGGTGTGCTTCAAAATCTGTTTGATAGCTTGG 900
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      TTCATCAGAAAGTTGTCCCTTCCAGTCCAGATTACTGTGTTATCGATATCTTCAATGAGG 960
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      GAGATTATTCTCACCCTCATCATCATCCTCCTTGGTATGGTAGACCCATTTGTACACTCT 1020
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      GCCTGACTGACTGCGACATGGTATTTGGCCATGTTATTGCAGCAGATAGCCGAGGCGATC 1080
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      ATGCAGGTCCACTGAAACTCTCACTCTCTACAGGGTCTGTTCTAGTTTTTGAGGGAAAGA 1140
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      GCGCTGATATAGCAAAACGGGCACTCCCTGCTACAAGTAAGCAGCGTATCTTACTAAGTT 1200
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      TTGGGAAGTCTGTGTCAAGGAAGCACGTTCAGTCGGAAAGCAGCTTGCTTATCACTCCCC 1260
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CATTGACACCTCCTCCGATGCCTTGGGCTGCACCATTGAGGCCAGGGAACATAGCAATTC 1320
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      ATCCCTCAAGTCCTAAACAGCTTGTCTACAACCCTAGCAATAGAGTACCTGCAGTTTCAA 1380
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CCCCTGGACTTCACCATATTCCATCCAATGGCATCCAGACAGTTTTCGTTGCACCACTTC 1440
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CTATCACTCCAAAAGCTGTTCCATTTGCATCAGCTGTCACATTGCCAAACAGTACAGCCG 1500
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CATGGATCGCAGAAGCTGCTCCCAGGCCCGCTTCACCTCGTTTACCTCTTCAGGGTACAG 1560
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      GGGTATTCCTTCCTCCTGGATCAGGCAATCCACCCCCAGCTCAGAAGTTGGGCGTAAAAC 1620
consensus_12530#1      ------------------------------------------------------------
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      ATGCTGATGCTAAACCATTTTTTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTG 1680
consensus_12530#1      ---------------------TTCCACAAGAATCATCTGCCTCTTCATCTGGTGTAAGTG 39
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGG 1740
consensus_12530#1      CTCGTGCACATAAGGCTAATGGTAGTGTTTCTTCCAAACCAACAAGGAAAGATGATATGG 99
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCA 1800
consensus_12530#1      CTGAAGCTAAGCCAAAGTGCAATGGGAGTTCAGATGGTGGTAGCTCTGTTGCCCATGCCA 159
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      AGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCT 1860
consensus_12530#1      AGGCAACTGGAGGTTTAGAGGAGCAGAATGTTGTCGCAAAGTAGGCTGGCTACAAGATCT 219
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGTCCAAGTGGTTAC 1920
consensus_12530#1      CTGTTATCTTAAAAGTAGATAGCTGAAGATATTGAAATTTCTTTTTGGCGAAGTGGTTAC 279
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      AGGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCA 1980
consensus_12530#1      AGGAGTTTCCAAACACAGGCTATATTCTTGAGTAAGTGCTATGCTCTTGGAAATGTTGCA 339
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      CGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAAC 2040
consensus_12530#1      CGACAGCGTGATGCTCAAGATCAAATAGTTTTGAACATTGTAGCTATCTGAAAGCAAAAC 399
consensus_12530#2      ------------------------------------------------------------
                                                                                   

consensus_12530#0      TGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCA-ATTA 2099
consensus_12530#1      TGCACTCACCACACAACTTCATCTTCTCTACGGCGTCATTAGAGCAGCGGGACCA-ATTA 458
consensus_12530#2      ----------------------------------------CCGCCCACGCGTCCGCATTA 20
                                                                   *  ** * **  ****

consensus_12530#0      TGATGCTTTTTTTTTTTGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCC 2159
consensus_12530#1      TGATGCTTTTTTTT--TGGTCAGAGCTTAAGCATCAATTTTTGTATGTTATGAGCCTCCC 516
consensus_12530#2      TGATGCTTTTTTTTT-TGGTCAGAGCTTAAGCATCA-TTTTTGTATGTTATGA-CCTCCC 77
                       **************  ******************** **************** ******

consensus_12530#0      ATTTGCTCAT-GGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCT 2218
consensus_12530#1      ATTTGCTCAT-GGAGTGCAATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCT 575
consensus_12530#2      ATTTGCTCATTGGAGTGCCATTTGAGGAGAAATTCGAAAGAAAATTTTGTATATGATGCT 137
                       ********** ******* *****************************************

consensus_12530#0      ATATATGTCATCTTTGTTGCATAACGAATCTGAAATTTGCATCCTAAAAAAAAAAAAA-- 2276
consensus_12530#1      AGATATGTCATCTTTGTTGCATAACGAATCTGAAATTTGCATCCTACCGTGGGAGATGTG 635
consensus_12530#2      ATATATGTCATCTTNGT-GCATACCGAATCNGAAATT-GCACCAAA-------------- 181
                       * ************ ** ***** ****** ****** *** *  *              

consensus_12530#0      -----------------------------
consensus_12530#1      TTTGTCATTTAATGATCCGACAATAATTG 664
consensus_12530#2      -----------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)