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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2097 fasta sequence
[GCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTG-GCTTTGGTGGACACATATGATGTCATGAGAA-GTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACT-CGTAAGTTCTTCCGTGCAATTGAAGAAGAATTTGGGTTTATTGGCTTTGGAAAAATGAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGGTCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACATGCTATGCACAAGCAGCGCTTGGTTGTGTGTTCAAATTAGTTGAGATTAACAAACAACCTCGCATTAAATTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCACGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGT-GCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACG-CACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAACCTAGTGATGGTTTTTTCCTTGGAAAAAAAAAAAAAAAAAAAAAAACC]
[+] EMBL AK121140 [GCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTG GCTTTGGTGGACACATATGATGTCATGAGAA GTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACT CGTAAGTTCTTCCGTGCAATTGAAGAAGAATTTGGGTTTATTGGCTTTGGAAAAATGAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGGTCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACATGCTATGCACAAGCAGCGCTTGGTTGTGTGTTCAAATTAGTTGAGATTAACAAACAACCTCGCATTAAATTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCACGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGT GCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACG CACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAACCTAGTGATGGTT ]
[+] EMBL CB000023 [ ACCATCTTCGGTGGCCTTGAGGAGTGTATAAGACTTATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCA ]
[+] EMBL CB660730 [ TGAGGGTTCTGTTGTATCCTTTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAACTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCTTTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTG GCTTTGGTGGACACATATGATGTCATGAGAA GTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACT CGTAAGTTCTTCCGTGCAATTGAAGAAGAATTT ]
[+] EMBL CF323221 [ GATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTGNGCTTTGGTGGACACATATGATGTCATGAGAANGTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACTNCGTAAGTTCTTCCGTGCAATTGAAGAA AATTTGGGTTTATTGGCTTTGGAAAAATGAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGGTCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACAT ]
[+] EMBL BI804445 [ GGATTCGGTCGCATGGGCTATCTGGCCCGTATGA GCCAGACCACATGAGGAGGCTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGC ATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCCAAGGCCATTTGACCCTGCATCAGCAGAGCCCCCAAGATCAGTACGCCACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGC CGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTC GCCTTGCTAAAGAAGGCCTACATAAACCCTTTAACCTAGTGATGGTTTTTTCCTTGGAAAAAAAAAA ]
[-] EMBL CF324613 [ CAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACG CACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAACCTAGTGATGGTTTTTTCCTTGGAATAAAAAAAAAAAAAAAAAAAACC]
consensusID : consensus_12539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence
[AACCTCGCATTAAACTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCTCGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTATCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGAAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTAGGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAAGCTAGTTCCTCTGAGGTCCCTCAA]
[-] EMBL CB629741 [AACCTCGCATTAAACTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCTCGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTATCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGAAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTAGGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAAGCTAGTTCCTCTGAGGTCCCTCAA]
consensusID : consensus_12539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence
[GCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGATATTAAATATTCTTACACAATATATTTATCCTTGGACGACTTTGACGTGAAAGCTGAAATCCTACAATGCTTATACAAAAAAGCTTACTGCAATAATACTCTGACACGCTTTTACAACATGAGC]
[+] EMBL CB629740 [GCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGATATTAAATATTCTTACACAATATATTTATCCTTGGACGACTTTGACGTGAAAGCTGAAATCCTACAATGCTTATACAAAAAAGCTTACTGCAATAATACTCTGACACGCTTTTACAACATGAGC]
consensusID : consensus_12539#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CCTACCACTCGAGTGCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTGTCAGGATCCCTCATTCCCTTCCCCTCCTCGATCCCCTCTCCATGAATCCATCCTTTTTTTTAGACGCGTGTTTCCGCTGCTATCCGATCCGTCGTGCTCGTCAGCTCTTAAGCTCGTGCGACGGGGTGGTGATTTAGGGACAGTGGAGGAGGAGAGGGACGATCGGTTTTGGTGAATGCTCGGATATGGCGTGGAAGAGGCCCAATTGGTTATTGGTCCTGAGTTTTCGATCTGTGTTATGTGAATTCATGTGCGGTGCGGATTCGAGATTTCCAACTAGCTTTTTTCTCAATTTGATGATCCACTTAACTGTAACCACGGGTATTTCGATTCGAGATTTTTCTGTATGCAGATGTTGTTTGAACAACATGTATGTAAAGTGGTAGATATATGTCATCATAGCTGATGTAATAAAGTGAACATAGTGTCC]
[+] EMBL AK111243 [CCTACCACTCGAGTGCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTGTCAGGATCCCTCATTCCCTTCCCCTCCTCGATCCCCTCTCCATGAATCCATCCTTTTTTTTAGACGCGTGTTTCCGCTGCTATCCGATCCGTCGTGCTCGTCAGCTCTTAAGCTCGTGCGACGGGGTGGTGATTTAGGGACAGTGGAGGAGGAGAGGGACGATCGGTTTTGGTGAATGCTCGGATATGGCGTGGAAGAGGCCCAATTGGTTATTGGTCCTGAGTTTTCGATCTGTGTTATGTGAATTCATGTGCGGTGCGGATTCGAGATTTCCAACTAGCTTTTTTCTCAATTTGATGATCCACTTAACTGTAACCACGGGTATTTCGATTCGAGATTTTTCTGTATGCAGATGTTGTTTGAACAACATGTATGTAAAGTGGTAGATATATGTCATCATAGCTGATGTAATAAAGTGAACATAGTGTCC]
consensusID : consensus_12539#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GCCCAGACCACATGAGGAGCTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTGTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCCATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCACAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAGATCAGTACGCACGCTATGCAGTGCAGACTGCCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCCGNCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGCCCTTGCTAAAGAAGGCCTACATAAACACCTTTAACCTAGTGATGGTTTTTTCCCTTGGAATAAGTTCCTCTGAGGTCCCTCAACTTGTTAAAAAAAAAA]
[+] EMBL BM421670 [GCCCAGACCACATGAGGAGCTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTGTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCCATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCACAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAGATCAGTACGCACGCTATGCAGTGCAGACTGCCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCCGNCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGCCCTTGCTAAAGAAGGCCTACATAAACACCTTTAACCTAGTGATGGTTTTTTCCCTTGGAATAAGTTCCTCTGAGGTCCCTCAACTTGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGC 60
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCC 120
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAA 180
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGG 240
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAA 300
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTT 360
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 CTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGG 420
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCA 480
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 ACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGC 540
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAG 600
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGA 660
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTC 720
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAG 780
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAG 840
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGC 900
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTGGCTTTGGTGGACACATA 960
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TGATGTCATGAGAAGTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATAT 1020
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGA 1080
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 AACTCGTAAGTTCTTCCGTGCAATTGAAGAAGAATTTGGGTTTATTGGCTTTGGAAAAAT 1140
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGG 1200
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 ------------------------------------------------------------
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACATGCTATGCACAAGCAGC 1260
consensus_12539#2 ------------------------------------------------------------
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 --------------------------------------AACCTCGCATTAAACTGTCTGA 22
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GCTTGGTTGTGTGTTCAAATTAGTTGAGATTAACAAACAACCTCGCATTAAATTGTCTGA 1320
consensus_12539#2 ---------------------------------------------GCCACCACCACCGAG 15
consensus_12539#3 -CCTACCACTCGAGTGCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAG 59
consensus_12539#1 AGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGA 82
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 AGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGA 1380
consensus_12539#2 AATAATGGCGGCGGCGGCGGCAGCG-GCGGCGAACGGGGCGGGGGGCGGA--GGAGGGGT 72
consensus_12539#3 AATAATGGCGGCGGCGGCGGCAGCG-GCGGCGAACGGGGCGGGGGGCGGA--GGAGGGGT 116
consensus_12539#1 AGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGA 142
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 AGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGA 1440
consensus_12539#2 GCCGCGGCCGACGAACCCGATGGTGAC-GCCGCTGCTCACCGACCTCTACCAGTTCACCA 131
consensus_12539#3 GCCGCGGCCGACGAACCCGATGGTGAC-GCCGCTGCTCACCGACCTCTACCAGTTCACCA 175
consensus_12539#1 GAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCA 202
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 GAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCA 1500
consensus_12539#2 TGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACT 191
consensus_12539#3 TGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTGTCAGGATCCCTCA 235
consensus_12539#1 TGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCTCGGGAAGAGCT 262
consensus_12539#4 ------------------------------------------------------------
consensus_12539#0 TGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCACGGGAAGAGCT 1560
consensus_12539#2 TCCGGAAAAATCCCTTTGGTGGTG--AATTCACCATCTTCGGTGGCCTTGAGGAGTGTAT 249
consensus_12539#3 TTCCCTTCCCCTCCTCGATCCCCTC--TCCATGAATCCATCCTTTTTTTTAGACGCGTGT 293
consensus_12539#1 ACCATCCATCAACGAAATAAGG--AGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCA 320
consensus_12539#4 -------------------------------------------------------GCCCA 5
consensus_12539#0 ACCATCCATCAACGAAATAAGG--AGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCA 1618
consensus_12539#2 AAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCAT 309
consensus_12539#3 TTCCGCTGCTATCCGATCCGTCGTGCTCGT--CAGCTCTTAAGCTCGTGCGACGGGGTGG 351
*
consensus_12539#1 GACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTAC 380
consensus_12539#4 GACCACATGAGGAG-CTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTAC 64
consensus_12539#0 GACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTAC 1678
consensus_12539#2 GCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAAT-TGACTGCTCAGATGTTG 368
consensus_12539#3 TGATTTAGGGACAGTGGAGGAGGAGAGGGACGATCGGTTTTGGTGAATGCTCGGATAT-- 409
* * * * * *** **** * * *
consensus_12539#1 GATT-TCATCCACTTCTTGTGGCTCAAC-GAAGCTCCGGTAGGCGAACTGCAATGAAGGA 438
consensus_12539#4 GATTGTCATCCACTTCTTGTGGCTCAAC-GAAGCTCCGGTAGGCGAACTGCCATGAAGGA 123
consensus_12539#0 GATT-TCATCCACTTCTTGTGGCTCAAC-GAAGCTCCGGTAGGCGAACTGCAATGAAGGA 1736
consensus_12539#2 AGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTG--ATGATAAT 426
consensus_12539#3 -GGCGTGGAAGAGGCCCAATTGGTTATT--GGTCCTGAGTTTTCGATCTG---TGTTATG 463
* * * * * *** **
consensus_12539#1 AGAAAAAATGC-CGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATA 497
consensus_12539#4 AGAAAAAATGC-CGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATA 182
consensus_12539#0 AGAAAAAATGC-CGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATA 1795
consensus_12539#2 TGAAGGA--CC-TGTTGCGGTTATT-CAACTTCTTGAAACACCATTTTTAAGTCTGGTCA 482
consensus_12539#3 TGAATTCATGTGCGGTGCGG--ATTCGAGATTTCCAACTAGCTTTTTTCTCAATTTGATG 521
*** * * ** ** * * * **
consensus_12539#1 ATGTGCGCAAAATCGTGTACCATATGGGTTTCTATCA-AAGGCAATTTGACACTGCATCA 556
consensus_12539#4 ATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCACAAGGCAATTTGACACTGCATCA 242
consensus_12539#0 ATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCA-AAGGCAATTTGACACTGCATCA 1854
consensus_12539#2 AC-TATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCA 541
consensus_12539#3 AT--CCACTTAACTGTA-ACCACGGGTATTTCGATTC-GAGATTTTT-----CTGTAT-- 570
* * * ** * * ** * *
consensus_12539#1 GCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGAAGAC-TGC-AGAGAAAATAGCG 614
consensus_12539#4 GCAGAGCCCCAA-GATCAGTACGCACGCTATGCAGTGCAGAC-TGCCAGAGAAAATAGCG 300
consensus_12539#0 GCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGCAGAC-TGC-AGAGAAAATAGCG 1912
consensus_12539#2 AAGAATTTACTTGAATTTGGACTTA-GAAGGGCCCAGGGGCC-TGATGGAGGAATCAGTG 599
consensus_12539#3 GCAGATGTTGTTTGAACAACATGTATGTAAAGTGGTAGATATATGTCATCATAGCTGATG 630
* * * * * * ** * *
consensus_12539#1 TTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTC 674
consensus_12539#4 TTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGC-CGNCCTTTTGTC 359
consensus_12539#0 TTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTC 1972
consensus_12539#2 C-----ATCAAG-ATATTGTTATATGGGAGGATTTGATGCAACAAGA-TATTAAATATTC 652
consensus_12539#3 TAATAAAGTGAACATAGTGTCC-------------------------------------- 652
* * ** ***
consensus_12539#1 TAGTAGGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGC 734
consensus_12539#4 TAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGCCCTTGCTAAAGAAGGC 419
consensus_12539#0 TAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGC 2032
consensus_12539#2 T--TACACAATATATTTATCCTTGGACGACTTTGACGTGAAAGCTGAAATCCTACAATGC 710
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 CTACATAAACAC-TTTAAGCTAGTTCCTCTGAGGTCCCTCAA------------------ 775
consensus_12539#4 CTACATAAACACCTTTAACCTAGTGATGGTTTTTTCCCTTGGAATAAGTTCCTCTGAGGT 479
consensus_12539#0 CTACATAAACAC-TTTAACCTAGTGATGGTTTTTTCCTTGGAAAAAAAAAAAAAAAAAAA 2091
consensus_12539#2 TTATACAAAAAAGCTTACTGCAATAATACTCTGACACGCTTTTACAACATGAGC------ 764
consensus_12539#3 ------------------------------------------------------------
consensus_12539#1 -----------------------
consensus_12539#4 CCCTCAACTTGTTAAAAAAAAAA 502
consensus_12539#0 AAAACC----------------- 2097
consensus_12539#2 -----------------------
consensus_12539#3 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||