These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2097 fasta sequence [GCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTG-GCTTTGGTGGACACATATGATGTCATGAGAA-GTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACT-CGTAAGTTCTTCCGTGCAATTGAAGAAGAATTTGGGTTTATTGGCTTTGGAAAAATGAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGGTCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACATGCTATGCACAAGCAGCGCTTGGTTGTGTGTTCAAATTAGTTGAGATTAACAAACAACCTCGCATTAAATTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCACGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGT-GCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACG-CACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAACCTAGTGATGGTTTTTTCCTTGGAAAAAAAAAAAAAAAAAAAAAAACC] [+] EMBL AK121140 [GCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTG GCTTTGGTGGACACATATGATGTCATGAGAA GTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACT CGTAAGTTCTTCCGTGCAATTGAAGAAGAATTTGGGTTTATTGGCTTTGGAAAAATGAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGGTCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACATGCTATGCACAAGCAGCGCTTGGTTGTGTGTTCAAATTAGTTGAGATTAACAAACAACCTCGCATTAAATTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCACGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGT GCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACG CACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAACCTAGTGATGGTT ] [+] EMBL CB000023 [ ACCATCTTCGGTGGCCTTGAGGAGTGTATAAGACTTATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCA ] [+] EMBL CB660730 [ TGAGGGTTCTGTTGTATCCTTTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAACTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCTTTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTG GCTTTGGTGGACACATATGATGTCATGAGAA GTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACT CGTAAGTTCTTCCGTGCAATTGAAGAAGAATTT ] [+] EMBL CF323221 [ GATATTGTTATATGGGAGGATTTGATGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTCTCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAGTTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAGGATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGCTGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTGNGCTTTGGTGGACACATATGATGTCATGAGAANGTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATATGGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGAAACTNCGTAAGTTCTTCCGTGCAATTGAAGAA AATTTGGGTTTATTGGCTTTGGAAAAATGAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGGTCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACAT ] [+] EMBL BI804445 [ GGATTCGGTCGCATGGGCTATCTGGCCCGTATGA GCCAGACCACATGAGGAGGCTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGC ATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCCAAGGCCATTTGACCCTGCATCAGCAGAGCCCCCAAGATCAGTACGCCACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGC CGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTC GCCTTGCTAAAGAAGGCCTACATAAACCCTTTAACCTAGTGATGGTTTTTTCCTTGGAAAAAAAAAA ] [-] EMBL CF324613 [ CAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACG CACGCTATGCAGTGCAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAACCTAGTGATGGTTTTTTCCTTGGAATAAAAAAAAAAAAAAAAAAAACC] consensusID : consensus_12539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [AACCTCGCATTAAACTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCTCGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTATCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGAAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTAGGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAAGCTAGTTCCTCTGAGGTCCCTCAA] [-] EMBL CB629741 [AACCTCGCATTAAACTGTCTGAAGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGAAGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGAGAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCATGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCTCGGGAAGAGCTACCATCCATCAACGAAATAAGGAGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCAGACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCAATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTATCAAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGAAGACTGCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTCTAGTAGGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGCCTACATAAACACTTTAAGCTAGTTCCTCTGAGGTCCCTCAA] consensusID : consensus_12539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence [GCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGATATTAAATATTCTTACACAATATATTTATCCTTGGACGACTTTGACGTGAAAGCTGAAATCCTACAATGCTTATACAAAAAAGCTTACTGCAATAATACTCTGACACGCTTTTACAACATGAGC] [+] EMBL CB629740 [GCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGGTGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCAACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAGGGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGATGCAACAAGATATTAAATATTCTTACACAATATATTTATCCTTGGACGACTTTGACGTGAAAGCTGAAATCCTACAATGCTTATACAAAAAAGCTTACTGCAATAATACTCTGACACGCTTTTACAACATGAGC] consensusID : consensus_12539#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCTACCACTCGAGTGCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTGTCAGGATCCCTCATTCCCTTCCCCTCCTCGATCCCCTCTCCATGAATCCATCCTTTTTTTTAGACGCGTGTTTCCGCTGCTATCCGATCCGTCGTGCTCGTCAGCTCTTAAGCTCGTGCGACGGGGTGGTGATTTAGGGACAGTGGAGGAGGAGAGGGACGATCGGTTTTGGTGAATGCTCGGATATGGCGTGGAAGAGGCCCAATTGGTTATTGGTCCTGAGTTTTCGATCTGTGTTATGTGAATTCATGTGCGGTGCGGATTCGAGATTTCCAACTAGCTTTTTTCTCAATTTGATGATCCACTTAACTGTAACCACGGGTATTTCGATTCGAGATTTTTCTGTATGCAGATGTTGTTTGAACAACATGTATGTAAAGTGGTAGATATATGTCATCATAGCTGATGTAATAAAGTGAACATAGTGTCC] [+] EMBL AK111243 [CCTACCACTCGAGTGCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGCGGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCCGATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTGTCAGGATCCCTCATTCCCTTCCCCTCCTCGATCCCCTCTCCATGAATCCATCCTTTTTTTTAGACGCGTGTTTCCGCTGCTATCCGATCCGTCGTGCTCGTCAGCTCTTAAGCTCGTGCGACGGGGTGGTGATTTAGGGACAGTGGAGGAGGAGAGGGACGATCGGTTTTGGTGAATGCTCGGATATGGCGTGGAAGAGGCCCAATTGGTTATTGGTCCTGAGTTTTCGATCTGTGTTATGTGAATTCATGTGCGGTGCGGATTCGAGATTTCCAACTAGCTTTTTTCTCAATTTGATGATCCACTTAACTGTAACCACGGGTATTTCGATTCGAGATTTTTCTGTATGCAGATGTTGTTTGAACAACATGTATGTAAAGTGGTAGATATATGTCATCATAGCTGATGTAATAAAGTGAACATAGTGTCC] consensusID : consensus_12539#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GCCCAGACCACATGAGGAGCTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTGTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCCATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCACAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAGATCAGTACGCACGCTATGCAGTGCAGACTGCCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCCGNCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGCCCTTGCTAAAGAAGGCCTACATAAACACCTTTAACCTAGTGATGGTTTTTTCCCTTGGAATAAGTTCCTCTGAGGTCCCTCAACTTGTTAAAAAAAAAA] [+] EMBL BM421670 [GCCCAGACCACATGAGGAGCTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTACGATTGTCATCCACTTCTTGTGGCTCAACGAAGCTCCGGTAGGCGAACTGCCATGAAGGAAGAAAAAATGCCGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATAATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCACAAGGCAATTTGACACTGCATCAGCAGAGCCCCAAGATCAGTACGCACGCTATGCAGTGCAGACTGCCAGAGAAAATAGCGTTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCCGNCCTTTTGTCTAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGCCCTTGCTAAAGAAGGCCTACATAAACACCTTTAACCTAGTGATGGTTTTTTCCCTTGGAATAAGTTCCTCTGAGGTCCCTCAACTTGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAGAATAATGGCGGCGGC 60 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GGCGGCAGCGGCGGCGAACGGGGCGGGGGGCGGAGGAGGGGTGCCGCGGCCGACGAACCC 120 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GATGGTGACGCCGCTGCTCACCGACCTCTACCAGTTCACCATGGCCTACGCCTACTGGAA 180 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACTTCCGGAAAAATCCCTTTGG 240 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TGGTGAATTCACCATCTTCGGTGGCCTTGAGGAGTGTATAAGATTCATTGCTAACTTCAA 300 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GTTAACAGATACGGAAATAACATTCCTGCGATCTGCCATGCCTACATGCGAGGACGGCTT 360 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 CTTTGAGTACCTTAGTTCAATTGACTGCTCAGATGTTGAGGTTTATGCCATCCCTGAGGG 420 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TTCTGTTGTATTCCCTAAAGTTCCACTGATGATAATTGAAGGACCTGTTGCGGTTATTCA 480 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 ACTTCTTGAAACACCATTTTTAAGTCTGGTCAACTATGCATCCTTGGTTACTACAAACGC 540 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GGCAAGACACAGACTTGTAGCAGGGAAGTCAAAGAATTTACTTGAATTTGGACTTAGAAG 600 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GGCCCAGGGGCCTGATGGAGGAATCAGTGCATCAAGATATTGTTATATGGGAGGATTTGA 660 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TGCAACAAGCAATGTTGCAGCAGGATGGTTATTTGGGATACCAATACGTGGGACTCATTC 720 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TCATGCATTCGTGAGCTCTTTCATGGGTCTTGATGACATCATTGACAGGACACTCGCTAG 780 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TTCTGATGGTTCAAACAAATGCGAAGACTTTGTCTCTCTGGTGCAGAATTGGCTTGCCAG 840 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GATTAAGGATGCTGGTTCATTGCGTGGTACCTTTCGTGAAACAAATCTAAGTGAGTTGGC 900 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TGCATTCACGTCATATGCGCTGGCATTTCCAAATTCCTTCCTGGCTTTGGTGGACACATA 960 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TGATGTCATGAGAAGTGGAGTGCCAAACTTCTGTGCTGTTGCTTTAGCCCTCAATGATAT 1020 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GGGGTATAAGGCGGCTGGAATTAGATTAGACTCTGGTGACTTAGCATACTTATCCGTTGA 1080 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 AACTCGTAAGTTCTTCCGTGCAATTGAAGAAGAATTTGGGTTTATTGGCTTTGGAAAAAT 1140 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GAATATCACAGCGAGCAATGACCTAAATGAGGAAACAATTGATGCCTTGAACAAGCAGGG 1200 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ------------------------------------------------------------ consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TCACGAGGTAGATGCATTTGGCATTGGTACCTACCTTGTTACATGCTATGCACAAGCAGC 1260 consensus_12539#2 ------------------------------------------------------------ consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 --------------------------------------AACCTCGCATTAAACTGTCTGA 22 consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GCTTGGTTGTGTGTTCAAATTAGTTGAGATTAACAAACAACCTCGCATTAAATTGTCTGA 1320 consensus_12539#2 ---------------------------------------------GCCACCACCACCGAG 15 consensus_12539#3 -CCTACCACTCGAGTGCTCCGGCGCACGAGCGGCACGCGCGCACCGCCACCACCACCGAG 59 consensus_12539#1 AGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGA 82 consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 AGATGTGACAAAGGTATCCATACCATGTAAAAAACGATGCTACAGGTTGTTTGGAAAAGA 1380 consensus_12539#2 AATAATGGCGGCGGCGGCGGCAGCG-GCGGCGAACGGGGCGGGGGGCGGA--GGAGGGGT 72 consensus_12539#3 AATAATGGCGGCGGCGGCGGCAGCG-GCGGCGAACGGGGCGGGGGGCGGA--GGAGGGGT 116 consensus_12539#1 AGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGA 142 consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 AGGTTATCCTTTGGTTGACATAATGACTGGAGAAGATGAGCCAGCCCCAAAGGTTGGTGA 1440 consensus_12539#2 GCCGCGGCCGACGAACCCGATGGTGAC-GCCGCTGCTCACCGACCTCTACCAGTTCACCA 131 consensus_12539#3 GCCGCGGCCGACGAACCCGATGGTGAC-GCCGCTGCTCACCGACCTCTACCAGTTCACCA 175 consensus_12539#1 GAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCA 202 consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 GAGGCTCCTGTGTCGGCATCCTTTCAATGAATCAAAGAGGGCATATGTTGTTCCACAGCA 1500 consensus_12539#2 TGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTCTTTGATCTTTACT 191 consensus_12539#3 TGGCCTACGCCTACTGGAAGGCCGGCAAGCACCTCGACCGCGCCGTGTCAGGATCCCTCA 235 consensus_12539#1 TGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCTCGGGAAGAGCT 262 consensus_12539#4 ------------------------------------------------------------ consensus_12539#0 TGTTGAGGAGTTATTGAAGTGCTACTGGCCTGGAACTACATCCGAACCACGGGAAGAGCT 1560 consensus_12539#2 TCCGGAAAAATCCCTTTGGTGGTG--AATTCACCATCTTCGGTGGCCTTGAGGAGTGTAT 249 consensus_12539#3 TTCCCTTCCCCTCCTCGATCCCCTC--TCCATGAATCCATCCTTTTTTTTAGACGCGTGT 293 consensus_12539#1 ACCATCCATCAACGAAATAAGG--AGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCA 320 consensus_12539#4 -------------------------------------------------------GCCCA 5 consensus_12539#0 ACCATCCATCAACGAAATAAGG--AGTCGGTGCATGGGCTATCTGGACCGTATGAGGCCA 1618 consensus_12539#2 AAGATTCATTGCTAACTTCAAGTTAACAGATACGGAAATAACATTCCTGCGATCTGCCAT 309 consensus_12539#3 TTCCGCTGCTATCCGATCCGTCGTGCTCGT--CAGCTCTTAAGCTCGTGCGACGGGGTGG 351 * consensus_12539#1 GACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTAC 380 consensus_12539#4 GACCACATGAGGAG-CTGAATCCAACCCCGTACAAGGTTAGCGTGAGTGCTAAGCTGTAC 64 consensus_12539#0 GACCACATGAGGAGGCTGAATCCAACACCGTACAAGGTTAGCGTGAGTGCTAAGCTGTAC 1678 consensus_12539#2 GCCTACATGCGAGGACGGCTTCTTTGAGTACCTTAGTTCAAT-TGACTGCTCAGATGTTG 368 consensus_12539#3 TGATTTAGGGACAGTGGAGGAGGAGAGGGACGATCGGTTTTGGTGAATGCTCGGATAT-- 409 * * * * * *** **** * * * consensus_12539#1 GATT-TCATCCACTTCTTGTGGCTCAAC-GAAGCTCCGGTAGGCGAACTGCAATGAAGGA 438 consensus_12539#4 GATTGTCATCCACTTCTTGTGGCTCAAC-GAAGCTCCGGTAGGCGAACTGCCATGAAGGA 123 consensus_12539#0 GATT-TCATCCACTTCTTGTGGCTCAAC-GAAGCTCCGGTAGGCGAACTGCAATGAAGGA 1736 consensus_12539#2 AGGTTTATGCCATCCCTGAGGGTTCTGTTGTATTCCCTAAAGTTCCACTG--ATGATAAT 426 consensus_12539#3 -GGCGTGGAAGAGGCCCAATTGGTTATT--GGTCCTGAGTTTTCGATCTG---TGTTATG 463 * * * * * *** ** consensus_12539#1 AGAAAAAATGC-CGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATA 497 consensus_12539#4 AGAAAAAATGC-CGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATA 182 consensus_12539#0 AGAAAAAATGC-CGGCGTGGTCATCACTGAATCAAAGTTTACTATCTTATTATGAGAATA 1795 consensus_12539#2 TGAAGGA--CC-TGTTGCGGTTATT-CAACTTCTTGAAACACCATTTTTAAGTCTGGTCA 482 consensus_12539#3 TGAATTCATGTGCGGTGCGG--ATTCGAGATTTCCAACTAGCTTTTTTCTCAATTTGATG 521 *** * * ** ** * * * ** consensus_12539#1 ATGTGCGCAAAATCGTGTACCATATGGGTTTCTATCA-AAGGCAATTTGACACTGCATCA 556 consensus_12539#4 ATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCACAAGGCAATTTGACACTGCATCA 242 consensus_12539#0 ATGTGCGCAAAATCGTGTACCATATGGGTTTCTTTCA-AAGGCAATTTGACACTGCATCA 1854 consensus_12539#2 AC-TATGCATCCTTGGTTACTACAAACGCGGCAAGACACAGACTTGTAGCAGGGAAGTCA 541 consensus_12539#3 AT--CCACTTAACTGTA-ACCACGGGTATTTCGATTC-GAGATTTTT-----CTGTAT-- 570 * * * ** * * ** * * consensus_12539#1 GCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGAAGAC-TGC-AGAGAAAATAGCG 614 consensus_12539#4 GCAGAGCCCCAA-GATCAGTACGCACGCTATGCAGTGCAGAC-TGCCAGAGAAAATAGCG 300 consensus_12539#0 GCAGAGCCCCAAAGATCAGTACGCACGCTATGCAGTGCAGAC-TGC-AGAGAAAATAGCG 1912 consensus_12539#2 AAGAATTTACTTGAATTTGGACTTA-GAAGGGCCCAGGGGCC-TGATGGAGGAATCAGTG 599 consensus_12539#3 GCAGATGTTGTTTGAACAACATGTATGTAAAGTGGTAGATATATGTCATCATAGCTGATG 630 * * * * * * ** * * consensus_12539#1 TTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTC 674 consensus_12539#4 TTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGC-CGNCCTTTTGTC 359 consensus_12539#0 TTGAGAATTAAACATGCTGTTCGGCTACAGGAATTAAATTTTCAGGCACGGCCTTTTGTC 1972 consensus_12539#2 C-----ATCAAG-ATATTGTTATATGGGAGGATTTGATGCAACAAGA-TATTAAATATTC 652 consensus_12539#3 TAATAAAGTGAACATAGTGTCC-------------------------------------- 652 * * ** *** consensus_12539#1 TAGTAGGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGC 734 consensus_12539#4 TAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGCCCTTGCTAAAGAAGGC 419 consensus_12539#0 TAGTATGTAAAGCCCATATCCGGGGGATGGACCGGTGTATTCGGCCTTGCTAAAGAAGGC 2032 consensus_12539#2 T--TACACAATATATTTATCCTTGGACGACTTTGACGTGAAAGCTGAAATCCTACAATGC 710 consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 CTACATAAACAC-TTTAAGCTAGTTCCTCTGAGGTCCCTCAA------------------ 775 consensus_12539#4 CTACATAAACACCTTTAACCTAGTGATGGTTTTTTCCCTTGGAATAAGTTCCTCTGAGGT 479 consensus_12539#0 CTACATAAACAC-TTTAACCTAGTGATGGTTTTTTCCTTGGAAAAAAAAAAAAAAAAAAA 2091 consensus_12539#2 TTATACAAAAAAGCTTACTGCAATAATACTCTGACACGCTTTTACAACATGAGC------ 764 consensus_12539#3 ------------------------------------------------------------ consensus_12539#1 ----------------------- consensus_12539#4 CCCTCAACTTGTTAAAAAAAAAA 502 consensus_12539#0 AAAACC----------------- 2097 consensus_12539#2 ----------------------- consensus_12539#3 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||