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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 886 fasta sequence
[TTCTTGAGAAAAGCTCCAACCTTTCCTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU183335 [TTCTTGAGAAAAGCTCCAACCTTTCCTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAAC ]
[+] EMBL AK073787 [ CTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGT ]
[+] EMBL AU082394 [ AGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCC ]
[+] EMBL C73276 [ AGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGG GGCGGCGGCGGAGGCCGGAAGAGCTCGTNGCCGGCCGGGAAGCCGNGGTAGGCGGCACGGGCGGGGAGCCTGCTCGCNGGACTCCCCTCGCGGGGCAACTTCNTCGCCGACAGCATCGCGTCCAGCATGGNAGGCCTCCCGGTTTATGTNTGCCTGCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTTTCCAGTTTAGCAAACAGAAAAATGAGGCAAAAGATTTAGGNTCAAGGACTCCAGGGGAAAGCAGNAAGGGGAAAAGG NTTTTTCCAa ]
[+] EMBL AU082450 [ ACCCTCAGTTGTTGTCTCACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCNCCGACAGCATCGCGTCCAGCATNGGAGGCCTCCCGGTTTATGTCTGCCTNCACGACACCGCTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTNAGCAAACAG AAAATNAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAA ]
[+] EMBL AU082396 [ GCGGGGCAATTTGGTCGCCGACAGCATCGCGTCCAGCATGGAAGGCCTCCCGGTTTATGTCTGCCTGCANGACACCGNTCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATNTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTNTGAAAGAGAGAGGGCTNTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATNTGAACTGCGATCGGANCCTCATTTTGTTGGATGTTGTNCCGTAGTGACGATCATACNCCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU082451 [ CAGACGNTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGNGAGGGCTCTCNCCNAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGAACTNCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAA ]
[+] EMBL AU082395 [ tnTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATNTGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACNCCATGCAAGTGAACTTCTATCGCAGNCCTCATGTAAGCATATATTTCATACAGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[AACCCTCTTCTAAATCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCCGATAACACCCTCAGTTGTTGTCTCACAATCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGTGCGTTCGTTCCCCCCCACCCCTAAAATGGACCAGCCTTTTTCTTGGCATGTTAGAAGGGTTCTTGTGAAAAGCCCTCTGATTTTTATGATTTTTTATTATTATTTTTTGCGCAGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGGTTTGTTTGTGATTTTCTAGGATAATCAAGCTTTACTTTTATTATTGTGATGATGCTAATTTGTTGTTTTACGAATGAGGGCTGATTGTAGTGCTAGTGGTGTGTACTGTGGAGAGACAGATTTGAAGTAGAAGGATGATCCTTTCTACTAGGGTTTTATGTAGAATTTTCCTTGTAAGAACGCAGTCATCTTGCCTAGGTTTTGTTCTTTCGATTGGCAATGCTGTTGGCATCATGCTTAATTTGCGGTTACTGAATTTGTTTTGCTGATGTTAAGAGTTGGAATTTCTATGGGTTTACTCAG]
[+] EMBL CB650237 [AACCCTCTTCTAAATCTTCCTCTTCCCCTCCCTCTCGCTGCCTGCCGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCCGATAACACCCTCAGTTGTTGTCTCACAATCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGATGGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGCGGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGCCGACAGCATCGCGTCCAGCATGGTGCGTTCGTTCCCCCCCACCCCTAAAATGGACCAGCCTTTTTCTTGGCATGTTAGAAGGGTTCTTGTGAAAAGCCCTCTGATTTTTATGATTTTTTATTATTATTTTTTGCGCAGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGCTCCTCCAGGTTTGTTTGTGATTTTCTAGGATAATCAAGCTTTACTTTTATTATTGTGATGATGCTAATTTGTTGTTTTACGAATGAGGGCTGATTGTAGTGCTAGTGGTGTGTACTGTGGAGAGACAGATTTGAAGTAGAAGGATGATCCTTTCTACTAGGGTTTTATGTAGAATTTTCCTTGTAAGAACGCAGTCATCTTGCCTAGGTTTTGTTCTTTCGATTGGCAATGCTGTTGGCATCATGCTTAATTTGCGGTTACTGAATTTGTTTTGCTGATGTTAAGAGTTGGAATTTCTATGGGTTTACTCAG]
consensusID : consensus_12541#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence
[TGTCTCTTGGGAGTCTTATCTCTTGAATATCATTTTTGGACGTATATGATTTACATTTTATAGTGGCAGTTGTTAGTATATGATCTATTGTCAGACCATGATCTTTTACATATTTTCATTACTTATGTTCTTATGATAAAGCTGATTATTGATGACACAAACAGATCATTTTAAGGCTGTTTTGTTCTGTTCATTGACTGATCACCGTTTTTGTCATTTTAGAGGGACAAGTTATAGACACAGACCCCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAATCAGAAAAATGAGGCAAAAGATGTAGGATCAAGGCCTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGATCTGCGATCGGAACCTCATTTTGTTGGATGTTGTCCCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCA]
[-] EMBL CB650238 [TGTCTCTTGGGAGTCTTATCTCTTGAATATCATTTTTGGACGTATATGATTTACATTTTATAGTGGCAGTTGTTAGTATATGATCTATTGTCAGACCATGATCTTTTACATATTTTCATTACTTATGTTCTTATGATAAAGCTGATTATTGATGACACAAACAGATCATTTTAAGGCTGTTTTGTTCTGTTCATTGACTGATCACCGTTTTTGTCATTTTAGAGGGACAAGTTATAGACACAGACCCCACAAACATTTTAATCAGATCTCTCCAGTTGAGCAATCAGAAAAATGAGGCAAAAGATGTAGGATCAAGGCCTCCAGGAGAAAGCAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGCTAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGAGCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCTCTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATCTGATCTGCGATCGGAACCTCATTTTGTTGGATGTTGTCCCGTAGTGACGATCATACACCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGGTGCCGAAATGAAAGATCTGGCTGATAGTTTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12541#0 TTCTTGAGAAAAGCTCCAACCTTTCCTCTTCTTCCTCTTCCCCTCCCTCTCGCTGCCTGC 60
consensus_12541#2 ------------------------------------------------------------
consensus_12541#1 ---------------AACCCTCTTCTAAATCTTCCTCTTCCCCTCCCTCTCGCTGCCTGC 45
consensus_12541#0 CGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCGGATTCCACCCTCAGTTGTTGTCT 120
consensus_12541#2 ------------------------------------------------------------
consensus_12541#1 CGCCTCTGCTTGCTCAGATCTTCTCCTCTCCTTCCCCGATAACACCCTCAGTTGTTGTCT 105
consensus_12541#0 CACAGTCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGAT 180
consensus_12541#2 ---------TGTCTC-TTGGGAGTCTTATCTCTTGAATATCATTTTTGGACGTATATGAT 50
consensus_12541#1 CACAATCTCCGAATCGCTGGGCGGTGGAGCCATTGGTGCTCACCCACGGGCACGGGCGAT 165
* ** **** * * * *** *** ** * ***
consensus_12541#0 GGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGC 240
consensus_12541#2 TTACATT--TTATAGTGGCAGTTGTTAGTATATGATCT-ATTGTCAGACCATGATCTTTT 107
consensus_12541#1 GGGCGCCGATGGCGGCGGCGGCGGAGGCCGGAAGAGCTCGTCGCCGGCCGGGAAGCCGGC 225
* * * *** * * * ** ** * * * * * * *
consensus_12541#0 GGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGC 300
consensus_12541#2 ACA-----TATTTTCATTACTTATGTTCTTATGATAAA----GCTGATTATTGATGACAC 158
consensus_12541#1 GGAGGCGGCACGGGCGGGGAGCCTGCTCGCCGGACTCCCCTCGCGGGGCAACTTCGTCGC 285
* * * ** ** ** ** * * * * *
consensus_12541#0 CGACAGCATCGCGTCCAGCATGGGAGGCCTCCCGGTTTATGTCTGCCTGCACGACACCGC 360
consensus_12541#2 AAACAG-ATCATTTTAAGGCTGTTTTG--TTCTGTTCATTGACTGATCAC-CGTTTTTGT 214
consensus_12541#1 CGACAGCATCGCGTCCAGCATGGTGCGT-TCGTTCCCCCCCACCCCTAAAATGGACCAGC 344
**** *** * ** ** * * * * *
consensus_12541#0 TCCTCCAGAGGGACAAGTTATAGACACAGACACCACAAACATTTTAATC---AGATCTCT 417
consensus_12541#2 CATTTTAGAGGGACAAGTTATAGACACAGACCCCACAAACATTTTAATC---AGATCTCT 271
consensus_12541#1 CTTTTTCTTGG--CATGTTAGAAGGGTTCTTGTGAAAAGCCCTCTGATTTTTATGATTTT 402
* ** ** **** * * ** * * * ** * * *
consensus_12541#0 CCAGTTGAGCAAACAGAAAAATGAGGCAAAAGATGTAGGATCAAGGACTCCAGGAGAAAG 477
consensus_12541#2 CCAGTTGAGCAATCAGAAAAATGAGGCAAAAGATGTAGGATCAAGGCCTCCAGGAGAAAG 331
consensus_12541#1 TTATTATTATTTTTTGCGCAGGGAGGC-----CTCCCGGTTTATGTCTGCCTGCACGACA 457
* * * * ***** * ** * * * ** * * *
consensus_12541#0 CAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGC 537
consensus_12541#2 CAGCAAGGGGAAAAGGTCTGCTTCCAGACTTTTAGATGGCAAGAATCCATCTAAAAGAGC 391
consensus_12541#1 CCGCTCCTCCA---GGTTTGTTTGTGATTTTCTAGG-----ATAATCAAGCTTTA----C 505
* ** * *** ** ** ** *** * **** * ** * *
consensus_12541#0 TAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGA 597
consensus_12541#2 TAACACTGGCAGCACGGCAGGGTCATCTGCCCATGGGGAATTGGGATCTGTTTTTTCTGA 451
consensus_12541#1 TTTTATTATTGTGATGAT--GCTAATTTGTTGTTTTACGAATGAGGGCTGATTGT----- 558
* * * * * * * ** ** * * ** * *** ** *
consensus_12541#0 GCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCT 657
consensus_12541#2 GCAGACGCTCCAATCATTTACGGTGGAGAAGTTGCGTATTCTTCTGAAAGAGAGAGGGCT 511
consensus_12541#1 ---AGTGCTAGTGGTGTGTACTGTGGAGAGACAGA-----TTTGAAGTAGAAGGATGATC 610
*** * *** ******* * ** *** ** *
consensus_12541#0 CTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATC 717
consensus_12541#2 CTCACCAAAAGGCAAAAAGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATC 571
consensus_12541#1 CTTTCTACTAGGGTTTTATGTAGAATT----------TTCCTTGTAAGAACGCAGTCATC 660
** * * *** * * *** * ** *** ** *** ***
consensus_12541#0 TGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGTACCGTAGTGACGATCATACACCA 777
consensus_12541#2 TGATCTGCGATCGGAACCTCATTTTGTTGGATGTTGTCCCGTAGTGACGATCATACACCA 631
consensus_12541#1 TTGCCTAGGTTTTG---TTCTTTCGATTGGCAATGCTGTTGGCATCATGCTTA-ATTTGC 716
* ** * * * ** ** **** * * * * * * * * *
consensus_12541#0 TGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAG-TGCCGAAAT 836
consensus_12541#2 TGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGGTGCCGAAAT 691
consensus_12541#1 GGTTACTGAATTTGTTTTGCTGATGTTAAG-AGTTGGAATTTCTATGGGTTTACTCAG-- 773
* * **** ** * * ** ** * * * * * ** ** * * *
consensus_12541#0 GAAAGATCTGGCTGATAGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 886
consensus_12541#2 GAAAGATCTGGCTGATAGTTTCCA-------------------------- 715
consensus_12541#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||