These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 654 fasta sequence [CTCCTTTTGGCACAAATTCTCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG-CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG-AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC-TTTCTTGGTGTTTTTGC-AGTGAATCGTACTCACTGCCATTGATGTTGT-ATGT-ATGAGTTGAATTC-AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTTTTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATACATATGTACTTGATATTTGCACTAAAAAAAAATAAATCCAACCAGGAACTTAGT] [+] EMBL AK059312 [CTCCTTTTGGCACAAATTCTCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGT ] [+] EMBL AU082204 [ TCTCGAGAAGGAGANCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCGCCCGCCGCCGTCGCCGTCGTGTCTCTGTNGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCNACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGNCCTCTCCGACGACGACGACCACCATGTTCCCGCAGNATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGNCGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTTTTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATACATATGTACTTGATATTTGCACTAAAAAAAAA ] [+] EMBL AU082281 [ TCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGNATGCCGTCGCCACCTGCNACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAG CGTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTTAATCGTACTCACTGCCATTGATGTNGT ATGT ATGAGTTGAATTC AGATTCC ] [+] EMBL AU082203 [ TCGAGAAGGAGAGCGAATATNCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCGTTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATNCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTG ] [+] EMBL AU082285 [ AGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGNATGCCGTCGCCACCTGCNACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAG CGTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATG CATGCGAAGGACGGCGGCGCTGGCATGGATTNCGGTGGTGTTTNTGTTTTCTGCTTTTCTTGGTGTTTTTNCAAGTTAATCGTANTCACTGCCATTGATGTTGTAATGTAATAAGTTGAATTT AAATTCCA ] [+] EMBL OSS14421A [ AGCGAATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGNCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGNCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAG CGTCTCCGACGACGACGACCACCATGTTCCCGCA GATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGATGGCATGGATTCCGGTGGTGTTTGTGTTTTNTGC TTTNTTGGTGTTTTTGC AGTGAATCGTANTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTCAAGATTCCATGATGNTTCTGAATAATGCAGTTGGTGTGATG CATGTAACATGGTAA ] [+] EMBL AK071433 [ AATATGCCGTCTCTGCGGCCGATCTTGCTCGCCGCCG CCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTTTTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATACATATGTACTTGATATTTGCACTATTTCAGCTTAAATCCAACCAGGAACTTAGT] [+] EMBL AU174370 [ TCTGTGGCCGGCTGCCCGCGTGGTGGCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCGTTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCTCCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT ATGAGTTGAATTC AGATTCCATGATGTTTNTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAaaaaaa ] [+] EMBL AU082272 [ nTGGGATGCCGTCGCCACCTGNGACCACCTCGCCGTTCCCGTTTTGCCCGACGACGCCGGCGGGGATNTCCACGCAGCCGTTTCCCTGGGCGGAGCC TCTCCGACGACGACGACCACCATNTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGCCATGCG AGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGC TTTCTTGGTGTTTTTGC AGTGAATCGTACTCACTGCCATTGATGTTGT ATGT NTGAGTTGAATTC AGATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGG ] consensusID : consensus_12542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [TTGCAGTGAATCGTACTCCCTGCCATTGATGTTGTATGTATGAGTTGAATTCANATTCCATGATGTTTTTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCANATANATAGTTGCAAACNCTATGTCAAAAGGAGTTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174423 [TTGCAGTGAATCGTACTCCCTGCCATTGATGTTGTATGTATGAGTTGAATTCANATTCCATGATGTTTTTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGATAGCCTTTGTATTGTATCANATANATAGTTGCAAACNCTATGTCAAAAGGAGTTCCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12542#0 CTCCTTTTGGCACAAATTCTCTCGAGAAGGAGAGCGAATATGCCGTCTCTGCGGCCGATC 60 consensus_12542#1 ------------------------------------------------------------ consensus_12542#0 TTGCTCGCCGCCGCCGCCGCCGTCGCCGTCGTGTCTCTGTGGCCGGCTGCCCGCGTGGTG 120 consensus_12542#1 ------------------------------------------------------------ consensus_12542#0 GCCGACATCGATCCGTCGTCTGGGATGCCGTCGCCACCTGCGACCACCTCGCCGTTCCCG 180 consensus_12542#1 ------------------------------------------------------------ consensus_12542#0 TTCTGCCCGACGACGCCGGCGGGGATCTCCACGCAGCCGTTTCCCTGGGCGGAGCCGTCT 240 consensus_12542#1 ------------------------------------------------------------ consensus_12542#0 CCGACGACGACGACCACCATGTTCCCGCAGGATCCAGGGTTTCTTGCATCGGCGGCATGC 300 consensus_12542#1 ------------------------------------------------------------ consensus_12542#0 CATGCGAGGACGGCGGCGCTGGCATGGATTCCGGTGGTGTTTGTGTTTTCTGCTTTCTTG 360 consensus_12542#1 ------------------------------------------------------------ consensus_12542#0 GTGTTTTTGCAGTGAATCGTACTCACTGCCATTGATGTTGTATGTATGAGTTGAATTCAG 420 consensus_12542#1 ------TTGCAGTGAATCGTACTCCCTGCCATTGATGTTGTATGTATGAGTTGAATTCAN 54 ****************** ********************************** consensus_12542#0 ATTCCATGATGTTTCTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGAT 480 consensus_12542#1 ATTCCATGATGTTTTTGAATATTGCAGCTGGTGTGATGCCATGTAACATGGTAATTTGAT 114 ************** ********************************************* consensus_12542#0 AGCCTTTGTATTGTATCAGATATATAGTTGCAAACACTATGTCAAAAGGAGTTCCTCTTT 540 consensus_12542#1 AGCCTTTGTATTGTATCANATANATAGTTGCAAACNCTATGTCAAAAGGAGTTCCTTTT- 173 ****************** *** ************ ******************** ** consensus_12542#0 TTCTCTCTCGCTGTGCTAGTCACTCTGTTTCTTGTTCATGAGGAAAGGAAAGGAAAGATA 600 consensus_12542#1 ------------AAAAAAAAAA---------------AAAAAAAAAAAAAAAAAAAAA-- 204 * * * * *** *** *** * consensus_12542#0 CATATGTACTTGATATTTGCACTAAAAAAAAATAAATCCAACCAGGAACTTAGT 654 consensus_12542#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||