cluster # 12543

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Oryza sativa
cluster # 12543 cluster # 12543 Sequences # 10 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12543#0 length = 835 sequences # 10
consensusID : consensus_12543#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 835
fasta sequence
                              [GACGAGACAAGGGGAAAGGTT-GGAGGAAACTTTCGAGGCTGA-TTTAGATAGTGCTATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTTCTGTAGGTGTTCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA-CACCATCTGCAAGATCGATACTTA-CAGAACTGAAAGG-CATTCTTTA-CAGT-AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT-GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA-AGAGCGAAGCTGAT-GGAGATCAGGCAGGAACAATCA-AGACGATCGGATAGGTCAGAT-GGGGCTGAAAAAA-GGAAAAAGAAAAAGCGAAGAACA-TCCGGTGAGAGCTGAGCTTTGTGGGCGA-GGCAAAGTAGTTTTTTTTTTTGTCGTAGCATACAAACGATATATCGGNNGNGCTCATATTGGGGCTACATGGANCACGANAGNAATTTT]

[+] EMBL CA765970             [GACGAGACAAGGGGAAAGGTT GGAGGAAACTTTCGAGGCTGA TTTAGATAGTGCTATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTTCTGTAGGTGTTCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCCTGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGATGGGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGATGGGGGCTGAAAAAAGGGAAAAAGAAAAAGCGAAGAACA TNCGGTGAGAGCTGACCTTTGGGGGCGANGCCAAAGTAGTTTTTTTTTTTGNCGNAGCATACAAACGATATATCGGNNGNGCTCATATTGGGGCTACATGGANCACGANAGNAATTTT]
[+] EMBL AU085871             [               AAGGTTNGGAGGAAACTTTCGAGGCTGATTTTAGATAGTGCTATGNCCCACAAGTATGGGCAAAAAGATGGTGCCCCTGATGAGGNTTCTGTAGGTGTTCCTGGTAGGAAACCCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACCCCTTGATCAGCACCAGG AGGACAAAATAATGGGAATGGAACTACATTTCANCCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTC AATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAAa                                                                                                                                              ]
[+] EMBL AY224574             [                                                         ATGGACCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTTCTGTAGGTGTTCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGACCA TCCGG                                                                                                                 ]
[-] EMBL CB639117             [                                                                                                                                                                    TGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCCCCAGGAAGGACAAAATAATGGGAATGGAATTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCCAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTTTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAG                                                                                                                                                               ]
[-] EMBL CB627649             [                                                                                                                                                                      CACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCAAAGTAGTTTTTTTTTTTGTCGTAGCATACAA                                                      ]
[+] EMBL CB627648             [                                                                                                                                                                        CTTGACCTTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCAAAGTAGTTTTTTTTTTTGTCGTAGCATACA                                                       ]
[+] EMBL CF327599             [                                                                                                                                                                                                                        GGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGTTT AAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGA CACCATCTGCAAGATCGATACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTG AAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGT                                                                                                                ]
[+] EMBL BI812295             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACTACGA CACCATCTGCCAGATCGATACTT  CCGAACTGAAAGG CATTCTTTA CCGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACC TGCTCGCCATGGATCATATAAAAGAATTGTTGGCCCTGAGATCCGATGCTCCCTTCCGAGATGCACAGAGCGAA CTGAT GGAGATCAGGCAGGAACCATCC AGACGATCGGATAGGTCCGAT GGGGCTGAAAAAA GG AAAAGAAAAAGCGAAGAACACTCCGGTGAGA CTGAGCTTTGTGGGCGA GGCCAAGTAGTTTTTTTTTTTGTCGTAGCATACc                                                       ]
[+] EMBL BI812289             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ctgACGACCACCATCTGCAAGATCGATACTTACCAGAACTGAAAGGCCATTCTTTACCAGTGAGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCCATGGATCATATAAAAGAATTGTTGGCCCTGAGATCAGATGCTCCCTTCCGAGATGCC AGAGCGAA CTGAT GGAGATCA GCAGGAACCATCACAGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACACTCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCCAAGTAGTTTTTTTTTTTGTCGTAGCATACc                                                       ]
[-] EMBL CF327598             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TACTTA CAGAACTGAAAGG CATTCTTTA CAGT AGAGTAAAGGAATGCAAGGATGCTATAGGTTTCAACCTTGCT GCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCA AGAGCGAAGCTGAT GGAGATCAGGCAGGAACAATCA AGACGATCGGATAGGTCAGAT GGGGCTGAAAAAA GGAAAAAGAAAAAGCGAAGAACA TCCGGTGAGAGCTGAGCTTTGTGGGCGA GGCAAAGTAG TTTTTTTTTTGTCGTAGCATACAA                                                      ]




>consensus_12543#0
GACGAGACAAGGGGAAAGGTTGGAGGAAACTTTCGAGGCTGATTTAGATAGTGCTATGGA
CCACAAGTATGGGCAAAAAGATGGTGCTCCTGATGAGGGTTCTGTAGGTGTTCCTGGTAG
GAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGA
GGAAGAAGTAAAACGCCTTGATCAGCACCAGGAAGGACAAAATAATGGGAATGGAACTAC
ATTTCAACCCAATGTTATAATGCAAGGGCAGTCACCATCGGATTATGTTTTGAATGTAGT
TTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTTCATTGCCATTCTCAGATGC
ACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGT
TTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCAATTAACTACGACACCATC
TGCAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAGGAATGCAA
GGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAGAATTGTTGGCCATGAG
ATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAGCTGATGGAGATCAGGCAGGAACAATC
AAGACGATCGGATAGGTCAGATGGGGCTGAAAAAAGGAAAAAGAAAAAGCGAAGAACATC
CGGTGAGAGCTGAGCTTTGTGGGCGAGGCAAAGTAGTTTTTTTTTTTGTCGTAGCATACA
AACGATATATCGGNNGNGCTCATATTGGGGCTACATGGANCACGANAGNAATTTT
clustalw multiple alignements is not computed in this case