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Oryza sativa
cluster # 12545 cluster # 12545       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12545#0 length = 1296 sequences # 6  
consensus_12545#1 length = 594 sequences # 2  
consensus_12545#2 length = 333 sequences # 1  
consensus_12545#3 length = 325 sequences # 1  

consensusID : consensus_12545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1296
fasta sequence
                              [CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGAAGAGGGACCCGGCGCCGGACGTGGGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACGACAAGAACGACGACGGCGAGGAAGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCGGCAGAATGCTCTCCAGCGGCTTGTCGACGAGTGCCGCGTGCTGCTCGATGGCTCCTCCAAGTCCACTCAGCCGCCCAACAGTACTACCGTCTCCCGTATCGTCGCCTTGCTCAATGGAATTGGACCGGATGACCTCAAGCTGGGCACGGTGCTCGACACCTCCGAGGTAACGAGAGCTGCCGCTTTCCGCCGCCGAGACCCCATACAGGTTATCGGGGGCAATTACCTGTACGAATGCGATAATTTCACGGTGGCGGTCTTCTACCTGCCCGCCGGGACGGTGATGCCGCTGCACGACCACCCGGGGATGACGGTGTTCAGCAAGCTCCTCGCCGGCTCGGTGCACGTCCAGTCCTTCGACTGGGTCAGCCCCTCCGTCTACGGCTCCGGCGGGAAGCGCGCTGTTCACTCTAAGAATACGAAGCTGGTGAAGAAGGTGCTGGACCACGTCGTGGAGGCGGGGTGCGGCACCTGGGTGCTGTACCCGTCCACCGGCGGGAACC-TGCACCGG-TTCGTC-CCGGCGTGGACGGGCCCTGCG-CTTCCTCGACGTCCTCACGCCG-CCCTACTCGGA-GGCCGCCTCCGCCGGTGCACCTTCTACC-GTGATTACCCCTT-CC-AACTCCACCGCAATCACAGGTTC-G-CCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGG-CTG-CGACCGATCAACGCCAGCGCGCCGCCGGACCTTC-GGATCGTC-C-CCTT-GACGTACAGTGGCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGC-GGGCTGGCCGGCCGCCGC-CGGCCGCCGATCGAATGAACGGTGGCCAC-C-GCGCGCGCGCTAGCTC-GATCGTGTGTC-GCTTACTGTTGAC-GAACGAATAAATTGGTGTGTGATATGATCGATGGTTTGC-GACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAA-C-ATAATGACCAT-CCCCAGATGTTTTAATTACTTTGAGTGTCCTTAGTGTAATTTGTTGGTGTGAATTTCTCAAAAAAGTGTGATGTGGTGCTCATGCGTATGAAGTGATTGTCAGGTTGTGTAAAAAAAAAA]

[+] EMBL AK107417             [CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGAAGAGGGACCCGGCGCCGGACGTGGGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACGACAAGAACGACGACGGCGAGGAAGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCGGCAGAATGCTCTCCAGCGGCTTGTCGACGAGTGCCGCGTGCTGCTCGATGGCTCCTCCAAGTCCACTCAGCCGCCCAACAGTACTACCGTCTCCCGTATCGTCGCCTTGCTCAATGGAATTGGACCGGATGACCTCAAGCTGGGCACGGTGCTCGACACCTCCGAGGTAACGAGAGCTGCCGCTTTCCGCCGCCGAGACCCCATACAGGTTATCGGGGGCAATTACCTGTACGAATGCGATAATTTCACGGTGGCGGTCTTCTACCTGCCCGCCGGGACGGTGATGCCGCTGCACGACCACCCGGGGATGACGGTGTTCAGCAAGCTCCTCGCCGGCTCGGTGCACGTCCAGTCCTTCGACTGGGTCAGCCCCTCCGTCTACGGCTCCGGCGGGAAGCGCGCTGTTCACTCTAAGAATACGAAGCTGGTGAAGAAGGTGCTGGACCACGTCGTGGAGGCGGGGTGCGGCACCTGGGTGCTGTACCCGTCCACCGGCGGGAACC TGCACCGG TTCGTCGCCGGCGTGGACGGGCCCTGCGCCTTCCTCGACGTCCTCACGCCG CCCTACTCGGAGGGCCGCCTCCGCCGGTGCACCTTCTACC GTGATTACCCCTT CC AACTCCACCGCAATCACAGGTTC GCCCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGG CTG CGACCGATCAACGCCAGCGCGCCGCCGGACCTTC GGATCGTC C CCTT GACGTACAGTGGCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGC GGGCTGGCCGGCCGCCGC CGGCCGCCGATCGAATGAACGGTGGCCAC C GCGCGCGCGCTAGCTC GATCGTGTGTC GCTTACTGTTGAC GAACGAATAAATTG  GTGTGATATGATCGATGGTTTGC GACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAA CAATAATGACCAT CCCCAGATGTTTTAATTACTTTGAGTGTCCTTAGTGTAATTTGTTGGTG                                                                       ]
[+] EMBL BI800935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cCGGGAA C TGCCCCGGTTTCTTC CC GCGT GACCGGCCCTGCC CTTCCTCGACGTCCTCAC CCGCCCCTACTCGGA GGCCGCCTCCGCC GTGCACCTTCTACC GTGA TACCCCTT CC AACTCCACCGCAATCACAGGTTC G CCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGG CTG CGACCGATCAACGCCAGCGCGCCGCCGGACCTTC GGATCGTC C CCTT GACGTACAGTGGCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGC  GGCTGGCCGGCCGCCGC C GCCGCCGATCGAATGAACGGTGGCCAC C GCGCGCGCGCTAGCTC GATCGTGTGTC GCTTACTGTTGAC GAACGAATAAATTGGTGTGTGATATGATCGATGGTTTGC GACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAA C ATAATGACCAT CCCCAGATGTTTTAATTACTTTGAGTGTCCTTAGTGTAATTTGTTGGTGTGAATTTCTCAAAAAA                                                       ]
[+] EMBL BI802714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACCTTGCACCGT TTCGTC TCGGCGT GACGGGCCCTGCG CTTCCTCGACGTCCTCAC CCG  CCTATTCGGA GGCC CCTCCGCCGGTGCACCTTCTACCGGTGA TACCCCTTGCC AACTCCACCGCAATCACAGGTTC G CCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGGTCTG CGACCGATCAACGCCAGCGCGCCGCCGGACCTTC GGATCGTC C CCTT GACGTACAGTGGCCCGCCGGTCGTCTA GCCGGCCGGCTCGCCGGCAGGGCTGGCC GCCGCCGC CGGCC CCGATCGAATGAACGGTGGCCACACAGCGCGCGCGCTAGCTC GATCGTGTGTC GCTTACTGTTGAC GAACGAATAAATTGGTGTGTGATATGATCGATGGTTTGC GACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTA CAGTACTTTGCGTTTCCACAACTTGCTCTCTTCGTGT CAACAATAATAAA C ATAATGACCATCCCCCAGATGTTTTAATTACTTGGAGTGTCCTTAGTGTAAaaa                                                                              ]
[+] EMBL BI801167             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GG TTCGTC CCGGCGTGGAC GGCCCTGCG CTTCCTCGACGTCCTCACGCCG CCCTACTCGGA GGCCGCCTCCGCCGGTGCACCTTCTACCGGTGATTACCCCTT CCAAACTCCACCGCAATCACAGGTTCGG CCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGG CTG CGACCGATCAACGCCAGCGCGCCGCCGGACCTTC GGATCGTC C CCTT GACGTACAGTGGCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGC GGGCTGGCC GCCGCCGC CGGCCGCCGATCGAATGAACGGTGGCCAC C GCGCGCGCGCTAGCTC GATCGTGTGTC GCTTACTGTTGAC GAACGAATAAATTGGTGTGTGATATGATCGATGGTTTGC GACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAA CAATAATGACCAT CCCCAGATGTTTTAATTAaaaaa                                                                                                 ]
[+] EMBL BI800241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCCCTT CC AACTCCACCGCAATCACAGGTTCGG CCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGGATGG CTGTCGACCGATCAACGCCAGCGCGCCGCCGGACCTTC GGATCGTC C CCTT GACGTACAGTGGCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGC GGGCTGGCCGGCCGCCGC CGGCCGCCGATCGAATGAACGGTGGCCAC C GCGCGCGCGCTAGCTC GATCGTGTGTC GCTTACTGTTGAC GAACGAATAAATTGGTGTGTGATATGATCGATGGTTTGC GACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAACC ATAATGACCAT CCCCAGATGTTTTAATTACTTTGAGTGTCCTTAGTGTAATTTGTTGGTGTGAATTTCTCAATCCTGTGTGATGTGGTGCTCATGCGTATGAAGTGATTGTCAGGTTGTGTAAAAAAAAAA]
[+] EMBL BI800893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAATCACAGGTTC G CCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCAT G CTG CGACCGATCAACGCCAGCGCACCGCCGGACCTTCAGGATCGTCACACCTTGGACGTACAGTGGCACCCCGGTCGTCTAGGCCGGCCGGCTCGCCGGC GGGCTGGCCGGCCGCCACACGGCCGCCGATCGAATGAACGGTGGCCAC C GCGCGCGCGCTAGCTCAGATCGTGTGTCAGCTTACTGTTGACAGAACGAATAAATTGGTGTGTGATATGATCGATGGTTTGCAGACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAA C ATAATGACCAT CCCCAGATGTTTTAATTAaaaaa                                                                                                 ]


>consensus_12545#0 CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGAAGAGGGACCCGGCGCCGGACGTG GGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACGACAAGAACGACGAC GGCGAGGAAGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCGGCAGAATGCTCTCCAGCGG CTTGTCGACGAGTGCCGCGTGCTGCTCGATGGCTCCTCCAAGTCCACTCAGCCGCCCAAC AGTACTACCGTCTCCCGTATCGTCGCCTTGCTCAATGGAATTGGACCGGATGACCTCAAG CTGGGCACGGTGCTCGACACCTCCGAGGTAACGAGAGCTGCCGCTTTCCGCCGCCGAGAC CCCATACAGGTTATCGGGGGCAATTACCTGTACGAATGCGATAATTTCACGGTGGCGGTC TTCTACCTGCCCGCCGGGACGGTGATGCCGCTGCACGACCACCCGGGGATGACGGTGTTC AGCAAGCTCCTCGCCGGCTCGGTGCACGTCCAGTCCTTCGACTGGGTCAGCCCCTCCGTC TACGGCTCCGGCGGGAAGCGCGCTGTTCACTCTAAGAATACGAAGCTGGTGAAGAAGGTG CTGGACCACGTCGTGGAGGCGGGGTGCGGCACCTGGGTGCTGTACCCGTCCACCGGCGGG AACCTGCACCGGTTCGTCCCGGCGTGGACGGGCCCTGCGCTTCCTCGACGTCCTCACGCC GCCCTACTCGGAGGCCGCCTCCGCCGGTGCACCTTCTACCGTGATTACCCCTTCCAACTC CACCGCAATCACAGGTTCGCCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGGC TGCGACCGATCAACGCCAGCGCGCCGCCGGACCTTCGGATCGTCCCCTTGACGTACAGTG GCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGC CGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTT GACGAACGAATAAATTGGTGTGTGATATGATCGATGGTTTGCGACGATGATTATTAGTAT TGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCT CTCTTCGTGTGCAGCAATAATAAACATAATGACCATCCCCAGATGTTTTAATTACTTTGA GTGTCCTTAGTGTAATTTGTTGGTGTGAATTTCTCAAAAAAGTGTGATGTGGTGCTCATG CGTATGAAGTGATTGTCAGGTTGTGTAAAAAAAAAA



consensusID : consensus_12545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence
                              [AGAAGTTTGACAATTTGGGAGNGGGTNGGAACTGGT-GTAACCTTTCACCGGGGGACCTGAACGGTTTTTCCCGGGGGGAGGGCCCTGGCCTTCTTGAAGTCCTAAACCNCCCTAATNGGAGGCCGCTTCCGCCGGTGCACNTTTTACNGNGATTACCCCTTCCAATTCCACNGCAATNACAGGTTCGCCCGCAANTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGGGNTGNGACCGATCAACGCCAGCGCGCCGCCGGACCTTCGGATCGTCCCCTTGACGTACAGTGGCCCGCCGGTNGTNTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTTGACGAACGAATAAATTGGTGTGATATGATCGATGGTTTGCGACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAACAATAATGACCATCCCCAGATGTTTTAATTAAAAAAAAAAAA]

[-] EMBL AA753481             [AGAAGTTTGACAATTTGGGAGNGGGTNGGAACTGGT GTAACCTTTCACCGGGGGACCTGAACGGTTTTTCCCGGGGGGAGGGCCCTGGCCTTCTTGAAGTCCTAAACCNCCCTAATNGGAGGCCGCTTCCGCCGGTGCACNTTTTACNGNGATTACCCCTTCCAATTCCACNGCAATNACAGGTTCGCCCGCAANTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGGGNTGNGACCGATCAACGCCAGCGCGCCGCCGGACCTTCGGATCGTCCCCTTGACGTACAGTGGCCCGCCGGTNGTNTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTTGACGAACGAATAAATTGGTGTGATATGATCGATGGTTTGCGACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAACAATAATGACCATCCCCAGATGTTTTAATTAAAAAAAAAAAA]
[-] EMBL AA753541             [  gAGNTTGA AATTTG   GNGGG GGGGANTGGTNTTAACC TTCA CGGGGGAACTG ACGGTTTTTGCGGGGNGGAGGG CCTGNCTTTCTTG ANTCTTAAGCCGCCCTAATNGGAGGCCGCTT CNCCGGTG AC TTTTACCGTGATTACCCNTTCCAATTCCACNGCAATNACAGGTTCGCCCGCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCAT GGTTGCGACCGATCAACGCCAGCGCGCCGCCGGACNTTCGGATCGTCCCCTTGACGTACAGTGGCCCGCCGGTCGTNTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTTGACGAACGAATAAATTGGTGTGATATGATCGATGGTTTGCGACGATGATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGCAGCAATAATAAACAATAATGACCAaaaaaaaaa                     ]


>consensus_12545#1 AGAAGTTTGACAATTTGGGAGNGGGTNGGAACTGGTGTAACCTTTCACCGGGGGACCTGA ACGGTTTTTCCCGGGGGGAGGGCCCTGGCCTTCTTGAAGTCCTAAACCNCCCTAATNGGA GGCCGCTTCCGCCGGTGCACNTTTTACNGNGATTACCCCTTCCAATTCCACNGCAATNAC AGGTTCGCCCGCAANTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGGGNTGNGACCGAT CAACGCCAGCGCGCCGCCGGACCTTCGGATCGTCCCCTTGACGTACAGTGGCCCGCCGGT NGTNTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGCCGATCGAATG AACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTTGACGAACGAA TAAATTGGTGTGATATGATCGATGGTTTGCGACGATGATTATTAGTATTGGAGCGAGTAC TCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGCAGCAACTTGCTCTCTTCGTGTGC AGCAATAATAAACAATAATGACCATCCCCAGATGTTTTAATTAAAAAAAAAAAA



consensusID : consensus_12545#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGTATTGAGGGACCCGGCGCCGGACGTGGGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACGACAAGAACGACGACGGCGAGGAAGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCGGCAGAATGCTCTCCAGCGGCTTGTCAACGAGTGCCCCTTGCTGCTCGATGGCTCCTCCCAGTCCACTCAGCCGCCCAACAGTACTACCGGTTCCCTATCGTCCCCTGCTCATGGAATGGACCGATGACCTCACCGGGCCGTGCCACACCTCAGGTACAAACGCCCCTTTC]

[+] EMBL BQ164734             [CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGTATTGAGGGACCCGGCGCCGGACGTGGGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACGACAAGAACGACGACGGCGAGGAAGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCGGCAGAATGCTCTCCAGCGGCTTGTCAACGAGTGCCCCTTGCTGCTCGATGGCTCCTCCCAGTCCACTCAGCCGCCCAACAGTACTACCGGTTCCCTATCGTCCCCTGCTCATGGAATGGACCGATGACCTCACCGGGCCGTGCCACACCTCAGGTACAAACGCCCCTTTC]


>consensus_12545#2 CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGTATTGAGGGACCCGGCGCCGGACG TGGGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACGACAAGAACGACG ACGGCGAGGAAGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCGGCAGAATGCTCTCCAGC GGCTTGTCAACGAGTGCCCCTTGCTGCTCGATGGCTCCTCCCAGTCCACTCAGCCGCCCA ACAGTACTACCGGTTCCCTATCGTCCCCTGCTCATGGAATGGACCGATGACCTCACCGGG CCGTGCCACACCTCAGGTACAAACGCCCCTTTC



consensusID : consensus_12545#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence
                              [CGGCACGAGCAGCGCGCCGCCGGACCTTCGGATCGTCCCCTTGACGTACAGTGGCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTTGANGAACNAATAAATTGGTGTNATATGATCNANGGTTTGCGANNAAGANTATTANTATTGGANCGAATNCTCCATCCGCTTGTTATCTTAACANTACTTTGCGTTGCANCAACTTGCTCTCTTCCTGTNCNGCAATAATNAACAATNATGAC]

[+] EMBL AA751572             [CGGCACGAGCAGCGCGCCGCCGGACCTTCGGATCGTCCCCTTGACGTACAGTGGCCCGCCGGTCGTCTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTTGANGAACNAATAAATTGGTGTNATATGATCNANGGTTTGCGANNAAGANTATTANTATTGGANCGAATNCTCCATCCGCTTGTTATCTTAACANTACTTTGCGTTGCANCAACTTGCTCTCTTCCTGTNCNGCAATAATNAACAATNATGAC]


>consensus_12545#3 CGGCACGAGCAGCGCGCCGCCGGACCTTCGGATCGTCCCCTTGACGTACAGTGGCCCGCC GGTCGTCTAGGCCGGCCGGCTCGCCGGCGGGCTGGCCGGCCGCCGCCGGCCGCCGATCGA ATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTCGCTTACTGTTGANGAAC NAATAAATTGGTGTNATATGATCNANGGTTTGCGANNAAGANTATTANTATTGGANCGAA TNCTCCATCCGCTTGTTATCTTAACANTACTTTGCGTTGCANCAACTTGCTCTCTTCCTG TNCNGCAATAATNAACAATNATGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGAAGAGGGACCCGGCGCCGGACGTG 60
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      GGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACGACAAGAACGACGAC 120
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      GGCGAGGAAGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCGGCAGAATGCTCTCCAGCGG 180
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      CTTGTCGACGAGTGCCGCGTGCTGCTCGATGGCTCCTCCAAGTCCACTCAGCCGCCCAAC 240
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      AGTACTACCGTCTCCCGTATCGTCGCCTTGCTCAATGGAATTGGACCGGATGACCTCAAG 300
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      CTGGGCACGGTGCTCGACACCTCCGAGGTAACGAGAGCTGCCGCTTTCCGCCGCCGAGAC 360
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      CCCATACAGGTTATCGGGGGCAATTACCTGTACGAATGCGATAATTTCACGGTGGCGGTC 420
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      TTCTACCTGCCCGCCGGGACGGTGATGCCGCTGCACGACCACCCGGGGATGACGGTGTTC 480
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      AGCAAGCTCCTCGCCGGCTCGGTGCACGTCCAGTCCTTCGACTGGGTCAGCCCCTCCGTC 540
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      ------------------------------------------------------------
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      TACGGCTCCGGCGGGAAGCGCGCTGTTCACTCTAAGAATACGAAGCTGGTGAAGAAGGTG 600
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      -----AGAAGTTTGACAATTTGGGAGNGGGTNGGAACTGGTGTAACCTTTCACCGG--GG 53
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      CTGGACCACGTCGTGGAGGCGGGGTGCGGCACCTGGGTGCTGTACCCGTCCACCGGCGGG 660
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      GACCTGAACGGTTTTTCCCGGG---GGGAGGGCCCTG-GCCTTCTTGAAGTCCTAA-ACC 108
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      AACCTGCACCGGTTCGTCCCGGCGTGGACGGGCCCTGCGCTTCCTCGACGTCCTCACGCC 720
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      NCCCTAATNGGAGGCCGCTTCCGCCGGTGCACNTTTTACNGNGATTACCCCTTCCAATTC 168
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      GCCCTACTCGGAGGCCGCCTCCGCCGGTGCACCTTCTACCGTGATTACCCCTTCCAACTC 780
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      CACNGCAATNACAGGTTCGCCCGCAANTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGG 228
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      CACCGCAATCACAGGTTCGCC-GCAACTTGAGCGCCCAGGAGAAGAGCCAGTTTGCATGG 839
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      GNTGNGACCGATCAACGCCAGCGCGCCGCCGGACCTTCGGATC-GTCCCCTTGACGTACA 287
consensus_12545#3      --------CGG-CACGAGCAGCGCGCCGCCGGACCTTCGGATC-GTCCCCTTGACGTACA 50
consensus_12545#0      -CTGCGACCGATCAACGCCAGCGCGCCGCCGGACCTTCGGATC-GTCCCCTTGACGTACA 897
consensus_12545#2      ------------CCGGAGGAGCAGGTGGAGGAACCAGCGAAGAAGAGGTATTGAGGGACC 48
                                   *      ***  *  *  * ***  ** *   *     **** * ** 

consensus_12545#1      GTGGCCCGCCGGTNG-----TNTAGGCCGGCCGGCTC-GCCGGCGGGCTGGCCGGCCGCC 341
consensus_12545#3      GTGGCCCGCCGGTCG-----TCTAGGCCGGCCGGCTC-GCCGGCGGGCTGGCCGGCCGCC 104
consensus_12545#0      GTGGCCCGCCGGTCG-----TCTAGGCCGGCCGGCTC-GCCGGCGGGCTGGCCGGCCGCC 951
consensus_12545#2      CGGCGCCGGACGTGGGGAGCTCCAGCATGGACGGTACTGACGGCCAAGGAAGCGACGACG 108
                         *  ***   ** *     *  **   ** ***  * * ****        ** *  * 

consensus_12545#1      GCCGGC-CGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTC 400
consensus_12545#3      GCCGGC-CGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTC 163
consensus_12545#0      GCCGGC-CGCCGATCGAATGAACGGTGGCCACCGCGCGCGCGCTAGCTCGATCGTGTGTC 1010
consensus_12545#2      ACAAGAACGACGACGGCGAGGA-AGCGCCGGTGCTGCAGGCGGTGTCCCCGCCGCG-GCA 166
                        *  *  ** ***  *   * *  * * *      **  *** *  * *   ** * *  

consensus_12545#1      GCTTACTGTTGACGAACGAATAAATTGGTGTG--ATA-TGATCGATGGTTTGCGACGATG 457
consensus_12545#3      GCTTACTGTTGANGAACNAATAAATTGGTGTN--ATA-TGATCNANGGTTTGCGANNAAG 220
consensus_12545#0      GCTTACTGTTGACGAACGAATAAATTGGTGTGTGATA-TGATCGATGGTTTGCGACGATG 1069
consensus_12545#2      GAATGCTCTCCAGCGGCTTGTCAACGAGTGCCCCTTGCTGCTCGATGGCTC-CTCCCAGT 225
                       *  * ** *  *    *   * **   ***     *  ** ** * ** *  *    *  

consensus_12545#1      ATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGC 517
consensus_12545#3      ANTATTANTATTGGANCGAATNCTCCATCCGCTTGTTATCTTAACANTACTTTGCGTTGC 280
consensus_12545#0      ATTATTAGTATTGGAGCGAGTACTCGATCCGCTTGTTATCTTAGCAGTACTTTGCGTTGC 1129
consensus_12545#2      CCACTCAGCCGCCCAAC-AGTACT--ACCGGTTCCCTATCGTCCCCTGCTCATGGAATGG 282
                           * *       * * * * **  * * * *   **** *  *       **   ** 

consensus_12545#1      AGCAACTTGCTCTCTTCGTGTGCAGCAATAAT--AAACAATAATGACCATCCCCAGATGT 575
consensus_12545#3      ANCAACTTGCTCTCTTCCTGTNCNGCAATAAT--NAACAATNATGAC------------- 325
consensus_12545#0      AGCAACTTGCTCTCTTCGTGTGCAGCAATAAT--AAACA-TAATGACCATCCCCAGATGT 1186
consensus_12545#2      ACCGA--TGACCTCACCGGGCCGTGCCACACCTCAGGTACAAACGCCCCTTTC------- 333
                       * * *  **  ***  *  *    ** * *        *   * * *             

consensus_12545#1      TTTAATTAAAAAAAAAAAA----------------------------------------- 594
consensus_12545#3      ------------------------------------------------------------
consensus_12545#0      TTTAATTACTTTGAGTGTCCTTAGTGTAATTTGTTGGTGTGAATTTCTCAAAAAAGTGTG 1246
consensus_12545#2      ------------------------------------------------------------
                                                                                   

consensus_12545#1      --------------------------------------------------
consensus_12545#3      --------------------------------------------------
consensus_12545#0      ATGTGGTGCTCATGCGTATGAAGTGATTGTCAGGTTGTGTAAAAAAAAAA 1296
consensus_12545#2      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)