cluster # 12546

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12546 cluster # 12546 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12546#0 length = 673 sequences # 9

consensus_12546#1 length = 174 sequences # 1

consensusID : consensus_12546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 673
fasta sequence

                              [CCTCCACGGC-CACTATAAGAGCGCGGCGGCGGCGGCGGCG-GGGGCGGGGGGCCATGGCGGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT-GTTGGAATCGGT-GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA-GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAATAATACTCCCTCCGTTTCAAAAAA]

[+] EMBL AU077699             [CCTCCACGGC CACTATAAGAGCGCGGCGGCGGCGGCGGCG GGGGCGGGGGGCCATGGCGGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTTCAAACTCAAC                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU166249             [ CTCCACGGC CACTATAAGAGCGCGGCGGCGNCGGCCGCG GGGGCGGGGGGCCATGGCGGNNNAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAAaaa                                              ]
[+] EMBL C27600               [      CGGCNCACTATAAGAGCGCGGC GNNGCGNCGGCGNGNGGC GGGGGCCATGG GGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAG TGATCCTGCGGGGGCTGCGGTTCCATGGCACCCAC GGGTATAGCCAGANGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGANTCCGACGCCTGGATGGATCTCGCCGCCGCCCGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT TGCTCANTCGATTGCAAACTNAACCCTTCTCAAGTTCCCTCAAATTTttt                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU092573             [                TAAGAGCGCGGCGGCGGCGGCGGCG GGGGCGGGGGGCCATGGCGGGNNAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAA                        ]
[+] EMBL AU069116             [                 AAGAGCGCGGNGGNGGCGGCGGCG GGGGCGGGGGGCCATGGCGNGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGNTGGNTCTNGCCGCCGCCGGGGACTCCNACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGANTGTAGTCGAAGGNCCGTCGCACAATCTNTTTGGAATCGGTGGGCTCAGTCGATTNCAAA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK121222             [                                                       ATGGCGGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTATTAATTAATACTC                ]
[+] EMBL OSR06621A            [                                                                           GGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCATGATCAAGTTCCCTCAGNTTTCTGCAGTTCGNGTCAAGGTTGACAAAACCTCATGTTGCTGTTNAGG                                                                                                                                                                                                                                                                      ]
[+] EMBL AU031705             [                                                                                                    GACAAGCTNAT CTGCGGGGGCTNCGGTTCCATGGCACCCACGGGNTGAAGCCAGAGGAGAAGAAGCTGGNCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGNCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTATTAATTAATACTCCCTCCGTTTCAAAAAA]
[+] EMBL AU181774             [                                                                                                                                                                                                                       CCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAA                        ]




>consensus_12546#0
CCTCCACGGCCACTATAAGAGCGCGGCGGCGGCGGCGGCGGGGGCGGGGGGCCATGGCGG
GGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGC
TGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCG
TCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCG
ACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGC
ACAATCTGTTGGAATCGGTGGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTC
AGATTTCTGCAGTTCGAGTGAAGGTTGAGAAACCTCATGTTGCTGTTCAGGGAGTCCTCG
ACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTC
AGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTAT
CATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTT
GCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAATAATACTCCCT
CCGTTTCAAAAAA

consensusID : consensus_12546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [GGTTCCATGGCACCCACGGGTAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGGCTCGACNCNTGGATGGATCTCGCCGCCGCCGGGGACTCGACTGACATCTCGACTACGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATTGAGTCGAGGCCCGTNACAA]

[+] EMBL AA749628             [GGTTCCATGGCACCCACGGGTAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGGCTCGACNCNTGGATGGATCTCGCCGCCGCCGGGGACTCGACTGACATCTCGACTACGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATTGAGTCGAGGCCCGTNACAA]




>consensus_12546#1
GGTTCCATGGCACCCACGGGTAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATC
GGCTCGACNCNTGGATGGATCTCGCCGCCGCCGGGGACTCGACTGACATCTCGACTACGT
CAGCTACACCGAAATCTACAGGATAGCCAAGAATTGAGTCGAGGCCCGTNACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12546#0      CCTCCACGGCCACTATAAGAGCGCGGCGGCGGCGGCGGCGGGGGCGGGGGGCCATGGCGG 60
consensus_12546#1      ------------------------------------------------------------
                                                                                   

consensus_12546#0      GGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGC 120
consensus_12546#1      ------------------------------------------------------------
                                                                                   

consensus_12546#0      TGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCG 180
consensus_12546#1      ---GGTTCCATGGCACCCACGGGT--AAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCG 55
                          ********************   **********************************

consensus_12546#0      TCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCG 240
consensus_12546#1      TCATCGGC-TCGACNCNTGGATGGATCTCGCCGCCGCCGGGGACTCGACTGACATCTC-G 113
                       ****** * ***** * *****************************    ******** *

consensus_12546#0      ACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGC 300
consensus_12546#1      ACTACGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATTGAGTCGA-GGCCCGTNAC 172
                       **  *************************************  ****** *******  *

consensus_12546#0      ACAATCTGTTGGAATCGGTGGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTC 360
consensus_12546#1      AA---------------------------------------------------------- 174
                       *                                                           

consensus_12546#0      AGATTTCTGCAGTTCGAGTGAAGGTTGAGAAACCTCATGTTGCTGTTCAGGGAGTCCTCG 420
consensus_12546#1      ------------------------------------------------------------
                                                                                   

consensus_12546#0      ACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTC 480
consensus_12546#1      ------------------------------------------------------------
                                                                                   

consensus_12546#0      AGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTAT 540
consensus_12546#1      ------------------------------------------------------------
                                                                                   

consensus_12546#0      CATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTT 600
consensus_12546#1      ------------------------------------------------------------
                                                                                   

consensus_12546#0      GCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAATAATACTCCCT 660
consensus_12546#1      ------------------------------------------------------------
                                                                                   

consensus_12546#0      CCGTTTCAAAAAA 673
consensus_12546#1      -------------