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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 736 fasta sequence
[TTATCATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG-AGAAACCAATCGATCGATCGAT-CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT-TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTTTCTCTGAAAAAAAAAA]
[+] EMBL AU174420 [TTATCATAGCCAATAAGAAAGCNAGAATCCNAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTNTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TNTTCAAGAAAaaaaaaa ]
[+] EMBL OSC4841 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCn ]
[+] EMBL AK058823 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAA ]
[+] EMBL OS1321672 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGNATCATGCTCGTC ]
[+] EMBL AU078034 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCG CTCGACCGCCTCGACTCCG CACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCT ]
[+] EMBL OSR01601A [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAAT ]
[+] EMBL AU078033 [ GGAGGAGGAAGAAAGCGAAGAAACCAATCGATCGATCGATCCATGCTGATCTTGAAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTTTCTCTGAAAAAAAAAA]
[-] EMBL CB965658 [ CCTGCGTCCGGATCCTCCGCGTCGTCCGTCCTCTGACGTTCGGCGAGGTCTTGATCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTGTCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTC ]
[+] EMBL AU078035 [ TCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTTTCTCTGAAAAAAAAAA]
consensusID : consensus_12550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[ATAAGAAAGCAAGAATCCAAGAGGAGCCAGGATCGGAGGAGGAAGAAAGCGAGAAACCAATCGATTGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCNCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAACTGCAGCGGATCATGCTTGTCGTCGCCTGCGACCGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATTGTTTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATTTTTTTTTTCAGTTTTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTTTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCCCTTGCAGGTATCTGTAATTATGTATGTCCGGTTTTGGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACCCCAGTTTAAAAAAAAGAGTATTGATGACCAAGTATTCATAGGATGAATGAAGAAGTGTTTTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTTTTCAGTTTATGCTGGTGATTCATAATTAATTTGGAGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759935 [ATAAGAAAGCAAGAATCCAAGAGGAGCCAGGATCGGAGGAGGAAGAAAGCGAGAAACCAATCGATTGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCNCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAACTGCAGCGGATCATGCTTGTCGTCGCCTGCGACCGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATTGTTTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATTTTTTTTTTCAGTTTTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTTTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCCCTTGCAGGTATCTGTAATTATGTATGTCCGGTTTTGGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACCCCAGTTTAAAAAAAAGAGTATTGATGACCAAGTATTCATAGGATGAATGAAGAAGTGTTTTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTTTTCAGTTTATGCTGGTGATTCATAATTAATTTGGAGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12550#0 TTATCATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAG 60
consensus_12550#1 ------------ATAAGAAAGCAAGAATCCAAGAGGAGCCAGGATCGGAGGAGG---AAG 45
************************** *************** ***
consensus_12550#0 AAAGCGAGAAACCAATCGATCGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGC 120
consensus_12550#1 AAAGCGAGAAACCAATCGATTGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGC 105
******************** ***************************************
consensus_12550#0 TGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGC 180
consensus_12550#1 TGCCGTTCACGCTGCTGGTGGCNCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAACTGC 165
********************** ******************************** ****
consensus_12550#0 AGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGT 240
consensus_12550#1 AGCGGATCATGCTTGTCGTCGCCTGCGACCGGAGCCGCC--------------------- 204
************* *************************
consensus_12550#0 TCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGA 300
consensus_12550#1 ---------------------TCGACCGCCTCGACTCCGCCACCGTCATTGTTTGAACGA 243
**************************** ** *******
consensus_12550#0 TGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCT 360
consensus_12550#1 TGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATTT 303
********************************************************** *
consensus_12550#0 TCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTCTT 420
consensus_12550#1 TTTTTTTCAGTTTTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTTTT 363
* ** ******* ******************************************** **
consensus_12550#0 CAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGC 480
consensus_12550#1 CAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGC 423
************************************************************
consensus_12550#0 AAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAAT 540
consensus_12550#1 AAGCCCTTGCAGGTATCTGTAATTATGTATGTCCGGTTTTGGTATATATGGGGCTGAAAT 483
**** ****** ******************** ******* *******************
consensus_12550#0 TAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGT 600
consensus_12550#1 TAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACCCCAGTTTAAAAAAAAGAGT 543
**************************************** ***** *************
consensus_12550#0 ATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAA 660
consensus_12550#1 ATTGATGACCAAGTATTCATAGGATGAATGAAGAAGTGTTTTCTGTTGTATAGAGAGAAA 603
******** ******************************* *******************
consensus_12550#0 AGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTT 720
consensus_12550#1 AGGTTCCTTTGTTTTTCAGTTTATGCTGGTGATTCATAATTAATTTGGAGCTAAAAAAAA 663
************* ************** *********************** *
consensus_12550#0 TCTCTGAAAAAAAAAA- 736
consensus_12550#1 AAAAAAAAAAAAAAAAA 680
**********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||