These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 736 fasta sequence [TTATCATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG-AGAAACCAATCGATCGATCGAT-CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT-TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTTTCTCTGAAAAAAAAAA] [+] EMBL AU174420 [TTATCATAGCCAATAAGAAAGCNAGAATCCNAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTNTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TNTTCAAGAAAaaaaaaa ] [+] EMBL OSC4841 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCn ] [+] EMBL AK058823 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAA ] [+] EMBL OS1321672 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGNATCATGCTCGTC ] [+] EMBL AU078034 [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCG CTCGACCGCCTCGACTCCG CACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCT ] [+] EMBL OSR01601A [ CATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAGAAAGCG AGAAACCAATCGATCGATCGAT CATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAAT ] [+] EMBL AU078033 [ GGAGGAGGAAGAAAGCGAAGAAACCAATCGATCGATCGATCCATGCTGATCTTGAAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGCAGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGTTCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTTTCTCTGAAAAAAAAAA] [-] EMBL CB965658 [ CCTGCGTCCGGATCCTCCGCGTCGTCCGTCCTCTGACGTTCGGCGAGGTCTTGATCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTGTCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTC ] [+] EMBL AU078035 [ TCCGCCACCGTCATCGTCTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCTTCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGT TCTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGTATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTTTCTCTGAAAAAAAAAA] consensusID : consensus_12550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [ATAAGAAAGCAAGAATCCAAGAGGAGCCAGGATCGGAGGAGGAAGAAAGCGAGAAACCAATCGATTGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCNCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAACTGCAGCGGATCATGCTTGTCGTCGCCTGCGACCGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATTGTTTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATTTTTTTTTTCAGTTTTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTTTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCCCTTGCAGGTATCTGTAATTATGTATGTCCGGTTTTGGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACCCCAGTTTAAAAAAAAGAGTATTGATGACCAAGTATTCATAGGATGAATGAAGAAGTGTTTTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTTTTCAGTTTATGCTGGTGATTCATAATTAATTTGGAGCTAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759935 [ATAAGAAAGCAAGAATCCAAGAGGAGCCAGGATCGGAGGAGGAAGAAAGCGAGAAACCAATCGATTGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGCTGCCGTTCACGCTGCTGGTGGCNCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAACTGCAGCGGATCATGCTTGTCGTCGCCTGCGACCGGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATTGTTTGAACGATGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATTTTTTTTTTCAGTTTTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTTTTCAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGCAAGCCCTTGCAGGTATCTGTAATTATGTATGTCCGGTTTTGGTATATATGGGGCTGAAATTAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACCCCAGTTTAAAAAAAAGAGTATTGATGACCAAGTATTCATAGGATGAATGAAGAAGTGTTTTCTGTTGTATAGAGAGAAAAGGTTCCTTTGTTTTTCAGTTTATGCTGGTGATTCATAATTAATTTGGAGCTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12550#0 TTATCATAGCCAATAAGAAAGCAAGAATCCAAGAGGAGACAGGATCGGAGGAGGAGGAAG 60 consensus_12550#1 ------------ATAAGAAAGCAAGAATCCAAGAGGAGCCAGGATCGGAGGAGG---AAG 45 ************************** *************** *** consensus_12550#0 AAAGCGAGAAACCAATCGATCGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGC 120 consensus_12550#1 AAAGCGAGAAACCAATCGATTGATCGATCATGCTGATCTTGGAGGTGGGCATCTGGTTGC 105 ******************** *************************************** consensus_12550#0 TGCCGTTCACGCTGCTGGTGGCGCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAGCTGC 180 consensus_12550#1 TGCCGTTCACGCTGCTGGTGGCNCCGGTGAGGAGGATGGTGAGGCTGGTGCAGGAACTGC 165 ********************** ******************************** **** consensus_12550#0 AGCGGATCATGCTCGTCGTCGCCTGCGACCGGAGCCGCCGCGGCGGCCGGCCGCCGACGT 240 consensus_12550#1 AGCGGATCATGCTTGTCGTCGCCTGCGACCGGAGCCGCC--------------------- 204 ************* ************************* consensus_12550#0 TCGGCGAGGTCTTGAGCCGCCTCGACCGCCTCGACTCCGCCACCGTCATCGTCTGAACGA 300 consensus_12550#1 ---------------------TCGACCGCCTCGACTCCGCCACCGTCATTGTTTGAACGA 243 **************************** ** ******* consensus_12550#0 TGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATCT 360 consensus_12550#1 TGATCGATTGATCAGCATCCTGTAAGCTGTAATTAAGTTGCTTCAATTCCTCTGCCATTT 303 ********************************************************** * consensus_12550#0 TCTTCTTCAGTTCTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTCTT 420 consensus_12550#1 TTTTTTTCAGTTTTTCTTGATGTAAATTTCTGAATCCGAATTAAGTGCGTTTTAGTTTTT 363 * ** ******* ******************************************** ** consensus_12550#0 CAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGC 480 consensus_12550#1 CAAGAAAGGATGCTCTCTTCTGAATCTTTTGCTCTGTGATCTTCAGTTTTTGGTACATGC 423 ************************************************************ consensus_12550#0 AAGCACTTGCATGTATCTGTAATTATGTATGTACGGTTTTTGTATATATGGGGCTGAAAT 540 consensus_12550#1 AAGCCCTTGCAGGTATCTGTAATTATGTATGTCCGGTTTTGGTATATATGGGGCTGAAAT 483 **** ****** ******************** ******* ******************* consensus_12550#0 TAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACACCAGTCTAAAAAAAAGAGT 600 consensus_12550#1 TAAGTTTTATCCAGCTCCCTGCATAAGATTATTGATGAACCCCAGTTTAAAAAAAAGAGT 543 **************************************** ***** ************* consensus_12550#0 ATTGATGAACAAGTATTCATAGGATGAATGAAGAAGTGTTCTCTGTTGTATAGAGAGAAA 660 consensus_12550#1 ATTGATGACCAAGTATTCATAGGATGAATGAAGAAGTGTTTTCTGTTGTATAGAGAGAAA 603 ******** ******************************* ******************* consensus_12550#0 AGGTTCCTTTGTTCTTCAGTTTATGCTGATGATTCATAATTAATTTGGAGCTCATTTCTT 720 consensus_12550#1 AGGTTCCTTTGTTTTTCAGTTTATGCTGGTGATTCATAATTAATTTGGAGCTAAAAAAAA 663 ************* ************** *********************** * consensus_12550#0 TCTCTGAAAAAAAAAA- 736 consensus_12550#1 AAAAAAAAAAAAAAAAA 680 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||