These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 857 fasta sequence [GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG-AAAGGTAAAG-TTGGAGAAGTTACGC-GGC-TTTTTAAGCACAACAGCACTGTAAT-AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT-GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGT] [+] EMBL AK070432 [GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATCCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAA ] [+] EMBL CF333389 [GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAA ] [+] EMBL OSC0031 [ TCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCNAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTTAGAAAAGGTAAAGTTTGGAGAAGTTACGCGGGCTTTTTTAAGCACAACAGCAC ] [+] EMBL AK060024 [ TGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGT] [+] EMBL CF326771 [ CTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGGAGTCCTGCACATTTTCTG ] [+] EMBL AU030053 [ TTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGGGAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATCTCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCCGCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTNAAG TTTGAAAAGTTACGC GG ] [-] EMBL CF333390 [ CATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAG AAAGGTAAAG TTGGAGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAATAAGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACAaaaaaaa ] [+] EMBL CF195997 [ AAG TTGGGGAAGTTACGC GGC TTTTTAAGCACAACAGCACTGTAAT AGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGATTGAAGGCCCCATTCACAGCTCAAATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTGAGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGNNNATTGGGTCAAGGTGTTCAAGNANNNAAGTTCGGAGTGATCATGGTAGCAT GGGAGTCCTGCACATTTTCTGAACTGCACTNNNTGTATGCCCAAt ] consensusID : consensus_12553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 783 fasta sequence [CTGAAATTTCCCTTTTTCCAATGCAGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTTACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGGTCAGCATTGTTTCTCTTGAAACTTCTTTCTGTGCTGCTTCTAGCTAGTGTCGTATATATAGTTTCAGATGCCTGATCGTTAACCTATGGTTGTTGGTGTTTTCTTTGATCAGATTGAAGGCCCCATT-CACAGCTCAAATGTGATGCTCTACT-CAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATT-CC-TTGAGGATGGAACGAAGGTT-CGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGTTGCTGTCCCCTGTCCTGAGCT] [-] EMBL CB618606 [CTGAAATTTCCCTTTTTCCAATGCAGCTTAAGCGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTTAGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTTACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAGCACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGGTCAGCATTGTTTCTCTTGAAACTTCTTTCTGTGCTGCTTCTAGCTAGTGTCGTATATATAGTTTCAGATGCCTGATCGTTAACCTATGGTTGTTGGTGTTTTCTTTGATCAGATTGAAGGCCCCATT CACAGCTCAAATGTGATGCTCTACT CAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATT CC TTGAGGATGGAACGAAGGTT CGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAATGTTGTTGCTGTCCCCTGTCCTGAGCT] [+] EMBL AU101476 [ ATTGAAGGCCCCATTNCACAGCTCAAATGTGATGCTCTACTCCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTNCCTTTGAGGATGGAACGAAGGTTNCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGAATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTGCACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAGATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATGCTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTTGTAAaaaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12553#0 GCGTTCGTTATCCTCTGCTGCTTCTCTGCGGTTTGAGCGAGCGAGGGAGGAAGAGGAGGG 60 consensus_12553#1 ------------------------------------------------------------ consensus_12553#0 GAGGAGACGAAGATGGCCGGGGTGGCGGCGTTGCAGGGCGCGATGGCGTCCCTCTCCATC 120 consensus_12553#1 ------------------------------------------------------------ consensus_12553#0 TCTGCGCCGGGGGCGGCGAGCACCAGCAGCTTCTGGGGCCACCCGCTCTCCACCTTCGCC 180 consensus_12553#1 ------------------------------------------------------------ consensus_12553#0 GCCGCGCCGGCTGGGGTTAAATTTATGATCAAGACATGCCCAATTCAAATGAGGCTTAAG 240 consensus_12553#1 ----------------------------CTGAAATTTCCCTTTTTCCAATGCAGCTTAAG 32 * * * ** *** **** ******* consensus_12553#0 CGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTT 300 consensus_12553#1 CGATGGGAGAGGAAGAAGTGTAAACCAAACAGTCTTCCTGTCCTGCACAAGATGCATGTT 92 ************************************************************ consensus_12553#0 AGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTT 360 consensus_12553#1 AGGATTGGCGATACAGTACAAGTCATTGCAGGCCGTGAGAAAGGTAAAGTTGGAGAAGTT 152 ************************************************************ consensus_12553#0 ACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAG 420 consensus_12553#1 ACGCGGCTTTTTAAGCACAACAGCACTGTAATAGTGAAGGACTTGAACTTGAAGTCCAAG 212 ************************************************************ consensus_12553#0 CACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATG------------------ 462 consensus_12553#1 CACAAGAAAGGAACAGAAGATGAACCGGGTGAAATCGTCATGGTCAGCATTGTTTCTCTT 272 ****************************************** consensus_12553#0 ------------------------------------------------------------ consensus_12553#1 GAAACTTCTTTCTGTGCTGCTTCTAGCTAGTGTCGTATATATAGTTTCAGATGCCTGATC 332 consensus_12553#0 -----------------------------------ATTGAAGGCCCCATTCACAGCTCAA 487 consensus_12553#1 GTTAACCTATGGTTGTTGGTGTTTTCTTTGATCAGATTGAAGGCCCCATTCACAGCTCAA 392 ************************* consensus_12553#0 ATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTG 547 consensus_12553#1 ATGTGATGCTCTACTCAAAGGAAAAGAATGTGGCGAGTAGGGTTGGACACAAATTCCTTG 452 ************************************************************ consensus_12553#0 AGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGA 607 consensus_12553#1 AGGATGGAACGAAGGTTCGGTACCTGGTCAAGACTGGTGAAATAATTGACAGTGCTGAGA 512 ************************************************************ consensus_12553#0 ATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTG 667 consensus_12553#1 ATTGGGTCAAGGTGTTCAAGGAAGGAAGTTCGGAGTGATCATGGTAGCATGGGAGTCCTG 572 ************************************************************ consensus_12553#0 CACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAG 727 consensus_12553#1 CACATTTTCTGAACTGCACTTTTTGTATGCCCAAATGAGTTGATGCTTTTCTAGATTCAG 632 ************************************************************ consensus_12553#0 ATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATG 787 consensus_12553#1 ATTTCAGAGTCTTGTAAATTTCTATACAGTTGCCAACATTTTTTTGTATCCAATGACATG 692 ************************************************************ consensus_12553#0 CTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTT 847 consensus_12553#1 CTTGGCTTGTTAACCAGCTACTAGAATGGTTCAGCTACATTCGCTCATACAAATGATTTT 752 ************************************************************ consensus_12553#0 GTAATGTTGT--------------------- 857 consensus_12553#1 GTAATGTTGTTGCTGTCCCCTGTCCTGAGCT 783 ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||