cluster # 12557

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Oryza sativa
cluster # 12557 cluster # 12557 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12557#0 length = 2286 sequences # 5

consensus_12557#1 length = 690 sequences # 4
consensus_12557#2 length = 305 sequences # 1

consensusID : consensus_12557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2286
fasta sequence

                              [CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCGTCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTTGTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAAACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGTTTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTATTGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCACACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATTGCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGGACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGCTGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTTCCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGCGATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGCACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGGGTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTTTGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGGGTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAGCGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAAAAAAAAAAAAA]

[+] EMBL AK121377             [CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCGTCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTTGTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAAACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGTTTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTATTGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCACACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATTGCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGGACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGCTGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTTCCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGCGATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGCACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGGGTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTTTGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGGGTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAGCGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAA                           ]
[+] EMBL AU182706             [                   AGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCGTCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTTGTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAAACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGTTTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTATTGTTAAGAGCGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK063143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTTGGAAAAAGCAAGAGGGGATTGAT  TGGGCATTTGGAATGCACACACTTCTGTCGGCAACATATCTGGTTCACTGCTGGCTGCATTTCTGCTGAAGTTTGGGTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTTTGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGGGTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAGCGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAG                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU056901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGANAGCCATCATTGACGGGANCGGGTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU182707             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAANAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTNTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAAAAAAAAAAAAA]




>consensus_12557#0
CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAA
CTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCC
TTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCG
TCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTT
GTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAA
ACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGT
TTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTAT
TGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCA
CACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATT
GCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGG
ACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGC
TGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTT
CCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGC
GATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGC
ACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGG
GTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTT
TGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAG
CTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAA
TGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCT
CTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCA
TACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTT
TGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGC
ACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCG
CACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTT
CGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAG
CTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGG
GTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAG
CGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACT
TGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGC
TCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGA
CACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTT
TATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGAT
GTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGAT
TAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAG
CCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTG
TGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGG
GAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTT
TTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAAAAAAA
AAAAAA

consensusID : consensus_12557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 690
fasta sequence

                              [GGAGCGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATG-CGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCT-TGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCA-TCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT--TC--TCA---AAAAAAAAAAAAAAAAA]

[-] EMBL CA761145             [GGAGCGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATG CGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCT TGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTTTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCA TCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT  TC  TCATTCAAGAAAAAAAAAAAAAA]
[+] EMBL AU056902             [                                                                                                  AATGCCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCNAGTCGCACCCCAAGACACGANACATGGATTNGATTCTCCGTAGCTCCANAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCANAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCA TCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT  TC  TCA   AAAAAAA          ]
[+] EMBL AU181240             [                                                                                                                                                                                                                                                                        tnTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTNTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATTCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGTTNTCNTTCA   AAAAAAAAAA       ]
[+] EMBL BI796168             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGCTTGTATCCTATTGTTGTAGTTTA GGCAGAC AAGGGAACCTCTCTTGTTCAAAGGTTACCC AAGTCTGTGTTTGCT GCCA TCTT GCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT  TC  TCA   TTCAAAA          ]




>consensus_12557#1
GGAGCGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACAC
AACTTGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCG
ATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCC
AAGACACGATACATGGATTAGATTCTTGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGC
ATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAG
AGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGAT
AGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTC
TGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGT
GTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACA
AAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCT
CGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAG
TGAATTGTTCTCAAAAAAAAAAAAAAAAAA

consensusID : consensus_12557#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [GGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGAGGAGGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAGGAAAATTGTTCTTTGTACTGTGTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTTGTTAGGGAAAGTTTGGGTT]

[+] EMBL C93434               [GGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGAGGAGGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAGGAAAATTGTTCTTTGTACTGTGTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTTGTTAGGGAAAGTTTGGGTT]




>consensus_12557#2
GGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTT
CTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGC
TAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGAGGA
GGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAGGAAAATTGTTCTTTGTACTGT
GTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTTGTTAGGGAAAGTTT
GGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12557#0      CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAA 60
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCC 120
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCG 180
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTT 240
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAA 300
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGT 360
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTAT 420
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCA 480
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATT 540
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGG 600
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGC 660
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTT 720
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGC 780
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGC 840
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGG 900
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTT 960
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAG 1020
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAA 1080
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCT 1140
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCA 1200
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTT 1260
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGC 1320
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCG 1380
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTT 1440
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAG 1500
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGG 1560
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAG 1620
consensus_12557#1      --------------------------------------------------------GGAG 4
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACT 1680
consensus_12557#1      CGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACACAACT 64
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGC 1740
consensus_12557#1      TGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGC 124
consensus_12557#2      ---------------------------------------------------GGCAAAAAA 9
                                                                           **  *   

consensus_12557#0      TCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGA 1800
consensus_12557#1      TCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGA 184
consensus_12557#2      AGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCC---- 65
                         **   * **   **   *  *   ****       *    ***  **    ***    

consensus_12557#0      CACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTT 1860
consensus_12557#1      CACGATACATGGATTAGATTCTTGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTT 244
consensus_12557#2      --CTACTCCTTGATTGAAAACCCACGCATCCTCCTC-CTTCCCATTGCGCA-TTCCGGCT 121
                         * *  * * ****  *  *       ***    * ** *       * * ** *   *

consensus_12557#0      TATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGAT 1920
consensus_12557#1      TATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGAT 304
consensus_12557#2      AGTCGCCTC--GCCGATCCCTC--TCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGA 177
                         * ** **  **  **  **   ** *  * **   *     *   *  **   * *  

consensus_12557#0      GTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGAT 1980
consensus_12557#1      GTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGAT 364
consensus_12557#2      GGAGGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAG----GAAAATTGTT---- 229
                       *  * * ****    * * *** **     *    *** * *      **** * *    

consensus_12557#0      TAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAG 2040
consensus_12557#1      TAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAG 424
consensus_12557#2      ---CTTTGTACTGTGTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTT 286
                           ** **     **  ** * **   **** * ** *   *        ** *  *  

consensus_12557#0      CCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTG 2100
consensus_12557#1      CCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTG 484
consensus_12557#2      GTTAGGGA-AAGTTTGGGTT---------------------------------------- 305
                          *   * * * *  **                                          

consensus_12557#0      TGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGG 2160
consensus_12557#1      TGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGG 544
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTT 2220
consensus_12557#1      GAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTT 604
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAA----- 2275
consensus_12557#1      TTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAA 664
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      --------AAAAAAAAAAA------- 2286
consensus_12557#1      TTGTTCTCAAAAAAAAAAAAAAAAAA 690
consensus_12557#2      --------------------------