These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 3574 fasta sequence [TGCGCCGCACAACCACAACCCATACGCAACTCCACCCAAAAACCAGCGTCGCATCGCACGCGCAAGCGCAGCACGAGCACAGTGAGGAGGAGCTTAGCTTAGCCTAGCTAGCTTAGCTCTACCAAAAGCTCTCTGTAGCTTGCTTGCTGCCCAGTATTGGGAGGGGCCGAAGGGCAATGGTGGGAGGCAGCCGTCTGTTCCTCCTCCTCCTCCTACCTTTGCTGCTGCTGCTGCTGGGCGCCGGCTGCAGAGATGGCCGCCGGTGCGCCGCCGCGGCCGCGCAGACTCAGAGGCTGCCGCAGCAAGAAGTTGAAGCACTTAA-GGGAATAGCACGCAAGCTTAACAAGATGGATTGGGACTTCAG-TGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTCATTCAAGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATTTCATCCAAGGACCAATTCCAGCATCATGGGCTAGCCTACCTGTTTTTAATCTGTCTCTCCAGGGAAATCGCATATCTGGAACAGTACCTAAGGAGCTTGGACGCATGCCCTTCTTGAAATCTATAAATCTAGAAGGCAATCAGCTTGAGGGTCATATTCCACCAGAATTCGGTAACATCATCAGTTTGGAGAGATTTTTCATTTCTGCAAATGACATCACAGGAGAGTTGCCTTCAACCTTTTCCAGGCTCACAAATATGACAGATTTCCGAATTGACGGGACCAATATCTCAGGAAGAATACCCAGTTTCATAAAAAATTGGCAACGGGTCAACAGAATAGACATGCAGGGTACCTTGATGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGAACAACTTAACAGAACTGAGAGTGACTGATTTGAGTGGACCGAGCATGAAATTTCCTCCCTTACAAAATGCACAGCACCTTACAAAAGTGGTCCTAAGAAACTGCTCCATATATGGTGAAATACCACCTTACCTTGGACAGATGCAGTATCTAATACTCATGGATCTAAGCTTCAACAAGTTGACTGGTCAAATTCCACAAAATTTTGACAGAATGGTGGCACTACAACTACAATATTTGTACTTAAGTGACAACATGCTGACTGGAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGGATGTGTCGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAACAAGCAAACGTAAATATGGTTTCAAGTTTTTCATCCTCAAATGACAATCTTTTGCAACCATGTTTACGAAAGAATCTTCCCTGCATGGACAAACCACGCTATTCCTCCCTATTTATTAACTGTGGTGGCAAAAGTGTTGAGGTCAATGGGAATATTTATGAGGATGACTCATCTCGAATAGGAACATCAACTTTTGTTTTATCAAATGACAGAAAATGGGCCTATAGTAGTACAGGAGATTTTGTGGGTAATCCAGATGCTGATTACATTGCTAGAAACACATCAGAACTCACACTGGATCACCCTGAGTTATACACTGAAGCTCGCCTCTCACCCCTCTCACTGAAATACTATGGAGTCTGCATGGAAAATGGTGAATATTCTGTAGAACTTCATTTTGCTGAGATTGTGTTTACAGAAGATCATACTTTTTCCAGCAATGGCAAGCGCATTTTTGATGTTTTTATCCAGGGTACTAAAGTTTTGAAGGATTTTAACATTCAAGATGAGGCTGGTGGTGTCCATCGTGTAATTACAAAAACTTTCACAACCAACATCACAGATAATACATTGGAAATTCACTTCTACTGGGCAGGCAAAGGTACCACAGGTGTTCCTGACCGGGGTGTGTATGGTCCATTGATCTCAGCTATATCTGTGATACAATTAAACAGGAACCATCATGGAATCTCTACTGGATTGATGATTACTATAATAGTAGCAGCATGTTTGATTGTCATACTTGCGCTAATTCTTTGCTATATCAAATTCTTCCGGAAAAAGAATCTGAAAGGAAATGGTTTACAATTCTTTTACCATGGAAGGAAGACCGATACTTCAGATCTTCAGACACGGACACAGTACTTCTTTAGCTTAAAAGAAATTGAATCTGCAACGAAAAATTTTGATCCTGCAAATAAAATTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGACGTGGAGATCATCAATTGAAACTAGACTGGCCAAAACGATATAATATCTGCCTTGGAACAGCAAAAGGCTTGTGCTATCTCCATGAAGAATCAACATTGAAAATCATCCATAGAGATATTAAACCATCAAATATTCTTCTTGATGAAAGACTGCAACCGAAAATATCTGATTTTGGTTTGGCTAAACTGAATGATGACCGTGGGCGTATGAGCACTCGGATAGCTGGAACAGTTGGATACATGGCACCTGAGTATGCCACGAGAGGTTGCTTGACATGTAAAGCAGATGTATACAGTTTTG-GAGTGGTGACATTAGAGATTGTTAGTGGAATGAGCAATACAAGTAGCATGTCAGATGACGAATATCTCCATCTTCTTGACTGGGCTGAAAGATTGAAGCAGGAAGGGAGACTACTGGAAATCGTTGACCAGCGTCTTGGTTCTCACTACTCTCAAGAAGAAGCACTTAGGATGCTCAATGTAGCTCTTCTATGCACAAACACATCACCTGTTCAGAGGCCAAGAATGTCTTCGGTGGTGAGCATGCTCTGTGGCCAAGCCCCTCTAGAGGTTGTACCTGATGAAGATTTGAGTGGATACATCAGGCCCAGTTACTCCCAATCCAATCAATCCATGAACAACAGCCTAACGGAGTGGTCCTACGCGCCATCGAGCGATCCTTCGATCTTGCTGCAGAACAGTATGGAGAGTGGTTACCTCCCATCTTCAAGCTCCCCTTCTTCAAAGCTGTGAGCTGCAGCACCAGGATTAGCTAGGATGAAATGTTGGCAATTGTTTTGAGCCCAATGCAGCAACTGTACATATGCATATGCATTTGCTCTGTCTGTAATCCCCTGTAGTTTGGCATTCTGTCAGTTGTCCTCAGCCTTCTCATCCATGGCATATGACAATTGATATCAATGATGCATTGCCATGATGATATATTCTTCACAAGGGGACTGGAAGCAGATATTGGAATCTGATGCTGCTGATGTGATGGTACATATGAATTGAGCAACTTCTCAGGGGCACCACTTGAGTTTCTTGTTTGTTAGCCTTGGTCATCATGTATCTAGTAAATGCAATGTACAACTAATCTGTGCAAATGTGGATATCTAGTAAGTTTTTTTTTTTCTTTTCTTTTCTAGCTAGGAAGGTTATTGTTTGGTGGGCAAGTAGAGAAGACATGTAACATAATAACAGTTCAGTGCAAACTAGTTTCTGCCCTTGTTAACTTAAAAAAGAAGGAAAAAGTAC] [+] EMBL AK065815 [TGCGCCGCACAACCACAACCCATACGCAACTCCACCCAAAAACCAGCGTCGCATCGCACGCGCAAGCGCAGCACGAGCACAGTGAGGAGGAGCTTAGCTTAGCCTAGCTAGCTTAGCTCTACCAAAAGCTCTCTGTAGCTTGCTTGCTGCCCAGTATTGGGAGGGGCCGAAGGGCAATGGTGGGAGGCAGCCGTCTGTTCCTCCTCCTCCTCCTACCTTTGCTGCTGCTGCTGCTGGGCGCCGGCTGCAGAGATGGCCGCCGGTGCGCCGCCGCGGCCGCGCAGACTCAGAGGCTGCCGCAGCAAGAAGTTGAAGCACTTAA GGGAATAGCACGCAAGCTTAACAAGATGGATTGGGACTTCAG TGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTCATTCAAGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATTTCATCCAAGGACCAATTCCAGCATCATGGGCTAGCCTACCTGTTTTTAATCTGTCTCTCCAGGGAAATCGCATATCTGGAACAGTACCTAAGGAGCTTGGACGCATGCCCTTCTTGAAATCTATAAATCTAGAAGGCAATCAGCTTGAGGGTCATATTCCACCAGAATTCGGTAACATCATCAGTTTGGAGAGATTTTTCATTTCTGCAAATGACATCACAGGAGAGTTGCCTTCAACCTTTTCCAGGCTCACAAATATGACAGATTTCCGAATTGACGGGACCAATATCTCAGGAAGAATACCCAGTTTCATAAAAAATTGGCAACGGGTCAACAGAATAGACATGCAGGGTACCTTGATGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGAACAACTTAACAGAACTGAGAGTGACTGATTTGAGTGGACCGAGCATGAAATTTCCTCCCTTACAAAATGCACAGCACCTTACAAAAGTGGTCCTAAGAAACTGCTCCATATATGGTGAAATACCACCTTACCTTGGACAGATGCAGTATCTAATACTCATGGATCTAAGCTTCAACAAGTTGACTGGTCAAATTCCACAAAATTTTGACAGAATGGTGGCACTACAACTACAATATTTGTACTTAAGTGACAACATGCTGACTGGAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGGATGTGTCGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAACAAGCAAACGTAAATATGGTTTCAAGTTTTTCATCCTCAAATGACAATCTTTTGCAACCATGTTTACGAAAGAATCTTCCCTGCATGGACAAACCACGCTATTCCTCCCTATTTATTAACTGTGGTGGCAAAAGTGTTGAGGTCAATGGGAATATTTATGAGGATGACTCATCTCGAATAGGAACATCAACTTTTGTTTTATCAAATGACAGAAAATGGGCCTATAGTAGTACAGGAGATTTTGTGGGTAATCCAGATGCTGATTACATTGCTAGAAACACATCAGAACTCACACTGGATCACCCTGAGTTATACACTGAAGCTCGCCTCTCACCCCTCTCACTGAAATACTATGGAGTCTGCATGGAAAATGGTGAATATTCTGTAGAACTTCATTTTGCTGAGATTGTGTTTACAGAAGATCATACTTTTTCCAGCAATGGCAAGCGCATTTTTGATGTTTTTATCCAGGGTACTAAAGTTTTGAAGGATTTTAACATTCAAGATGAGGCTGGTGGTGTCCATCGTGTAATTACAAAAACTTTCACAACCAACATCACAGATAATACATTGGAAATTCACTTCTACTGGGCAGGCAAAGGTACCACAGGTGTTCCTGACCGGGGTGTGTATGGTCCATTGATCTCAGCTATATCTGTGATACAATTAAACAGGAACCATCATGGAATCTCTACTGGATTGATGATTACTATAATAGTAGCAGCATGTTTGATTGTCATACTTGCGCTAATTCTTTGCTATATCAAATTCTTCCGGAAAAAGAATCTGAAAGGAAATGGTTTACAATTCTTTTACCATGGAAGGAAGACCGATACTTCAGATCTTCAGACACGGACACAGTACTTCTTTAGCTTAAAAGAAATTGAATCTGCAACGAAAAATTTTGATCCTGCAAATAAAATTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGACGTGGAGATCATCAATTGAAACTAGACTGGCCAAAACGATATAATATCTGCCTTGGAACAGCAAAAGGCTTGTGCTATCTCCATGAAGAATCAACATTGAAAATCATCCATAGAGATATTAAACCATCAAATATTCTTCTTGATGAAAGACTGCAACCGAAAATATCTGATTTTGGTTTGGCTAAACTGAATGATGACCGTGGGCGTATGAGCACTCGGATAGCTGGAACAGTTGGATACATGGCACCTGAGTATGCCACGAGAGGTTGCTTGACATGTAAAGCAGATGTATACAGTTTTG GAGTGGTGACATTAGAGATTGTTAGTGGAATGAGCAATACAAGTAGCATGTCAGATGACGAATATCTCCATCTTCTTGACTGGGCTGAAAGATTGAAGCAGGAAGGGAGACTACTGGAAATCGTTGACCAGCGTCTTGGTTCTCACTACTCTCAAGAAGAAGCACTTAGGATGCTCAATGTAGCTCTTCTATGCACAAACACATCACCTGTTCAGAGGCCAAGAATGTCTTCGGTGGTGAGCATGCTCTGTGGCCAAGCCCCTCTAGAGGTTGTACCTGATGAAGATTTGAGTGGATACATCAGGCCCAGTTACTCCCAATCCAATCAATCCATGAACAACAGCCTAACGGAGTGGTCCTACGCGCCATCGAGCGATCCTTCGATCTTGCTGCAGAACAGTATGGAGAGTGGTTACCTCCCATCTTCAAGCTCCCCTTCTTCAAAGCTGTGAGCTGCAGCACCAGGATTAGCTAGGATGAAATGTTGGCAATTGTTTTGAGCCCAATGCAGCAACTGTACATATGCATATGCATTTGCTCTGTCTGTAATCCCCTGTAGTTTGGCATTCTGTCAGTTGTCCTCAGCCTTCTCATCCATGGCATATGACAATTGATATCAATGATGCATTGCCATGATGATATATTCTTCACAAGGGGACTGGAAGCAGATATTGGAATCTGATGCTGCTGATGTGATGGTACATATGAATTGAGCAACTTCTCAGGGGCACCACTTGAGTTTCTTGTTTGTTAGCCTTGGTCATCATGTATCTAGTAAATGCAATGTACAACTAATCTGTGCAAATGTGGATATCTAGTAAGTTTTTTTTTTTCTTTTCTTTTCTAGCTAGGAAGGTTATTGTTTGGTGGGCAAGTAGAGAAGACATGTAACATAATAACAGTTCAGTGCAAACTAGTTTCTGCCCTTGTTAACTTAAAAAAGAAGGAAAAAGTAC] [+] EMBL AK103384 [ ATCGCACGCGCAAGCGCAGCACGAGCACAGTGAGGAGGAGCTTAGCTTAGCCTAGCTAGCTTAGCTCTACCAAAAGCTCTCTGTAGCTTGCTTGCTGCCCAGTATTGGGAGGGGCCGAAGGGCAATGGTGGGAGGCAGCCGTCTGTTCCTCCTCCTCCTCCTACCTTTGCTGCTGCTGCTGCTGGGCGCCGGCTGCAGAGATGGCCGCCGGTGCGCCGCCGCGGCCGCGCAGACTCAGAGGCTGCCGCAGCAAGAAGTTGAAGCACTTAA GGGAATAGCACGCAAGCTTAACAAGATGGATTGGGACTTCAG TGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTCATTCAAGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATTTCATCCAAGGACCAATTCCAGCATCATGGGCTAGCCTACCTGTTTTTAATCTGTCTCTCCAGGGAAATCGCATATCTGGAACAGTACCTAAGGAGCTTGGACGCATGCCCTTCTTGAAATCTATAAATCTAGAAGGCAATCAGCTTGAGGGTCATATTCCACCAGAATTCGGTAACATCATCAGTTTGGAGAGATTTTTCATTTCTGCAAATGACATCACAGGAGAGTTGCCTTCAACCTTTTCCAGGCTCACAAATATGACAGATTTCCGAATTGACGGGACCAATATCTCAGGAAGAATACCCAGTTTCATAAAAAATTGGCAACGGGTCAACAGAATAGACATGCAGGGTACCTTGATGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGAACAACTTAACAGAACTGAGAGTGACTGATTTGAGTGGACCGAGCATGAAATTTCCTCCCTTACAAAATGCACAGCACCTTACAAAAGTGGTCCTAAGAAACTGCTCCATATATGGTGAAATACCACCTTACCTTGGACAGATGCAGTATCTAATACTCATGGATCTAAGCTTCAACAAGTTGACTGGTCAAATTCCACAAAATTTTGACAGAATGGTGGCACTACAACTACAATATTTGTACTTAAGTGACAACATGCTGACTGGAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGGATGTGTCGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAACAAGCAAACGTAAATATGGTTTCAAGTTTTTCATCCTCAAATGACAATCTTTTGCAACCATGTTTACGAAAGAATCTTCCCTGCATGGACAAACCACGCTATTCCTCCCTATTTATTAACTGTGGTGGCAAAAGTGTTGAGGTCAATGGGAATATTTATGAGGATGACTCATCTCGAATAGGAACATCAACTTTTGTTTTATCAAATGACAGAAAATGGGCCTATAGTAGTACAGGAGATTTTGTGGGTAATCCAGATGCTGATTACATTGCTAGAAACACATCAGAACTCACACTGGATCACCCTGAGTTATACACTGAAGCTCGCCTCTCACCCCTCTCACTGAAATACTATGGAGTCTGCATGGAAAATGGTGAATATTCTGTAGAACTTCATTTTGCTGAGATTGTGTTTACAGAAGATCATACTTTTTCCAGCAATGGCAAGCGCATTTTTGATGTTTTTATCCAGGGTACTAAAGTTTTGAAGGATTTTAACATTCAAGATGAGGCTGGTGGTGTCCATCGTGTAATTACAAAAACTTTCACAACCAACATCACAGATAATACATTGGAAATTCACTTCTACTGGGCAGGCAAAGGTACCACAGGTGTTCCTGACCGGGGTGTGTATGGTCCATTGATCTCAGCTATATCTGTGATACAATTAAACAGGAACCATCATGGAATCTCTACTGGATTGATGATTACTATAATAGTAGCAGCATGTTTGATTGTCATACTTGCGCTAATTCTTTGCTATATCAAATTCTTCCGGAAAAAGAATCTGAAAGGAAATGGTTTACAATTCTTTTACCATGGAAGGAAGACCGATACTTCAGATCTTCAGACACGGACACAGTACTTCTTTAGCTTAAAAGAAATTGAATCTGCAACGAAAAATTTTGATCCTGCAAATAAAATTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGACGTGGAGATCATCAATTGAAACTAGACTGGCCAAAACGATATAATATCTGCCTTGGAACAGCAAAAGGCTTGTGCTATCTCCATGAAGAATCAACATTGAAAATCATCCATAGAGATATTAAACCATCAAATATTCTTCTTGATGAAAGACTGCAACCGAAAATATCTGATTTTGGTTTGGCTAAACTGAATGATGACCGTGGGCGTATGAGCACTCGGATAGCTGGAACAGTTGGATACATGGCACCTGAGTATGCCACGAGAGGTTGCTTGACATGTAAAGCAGATGTATACAGTTTTG GAGTGGTGACATTAGAGATTGTTAGTGGAATGAGCAATACAAGTAGCATGTCAGATGACGAATATCTC ] [+] EMBL CB639788 [ GCCTAGCTAGCTTAGCTCTACCAAAAGCTCTCTGTAGCTTGCTTGCTGCCCAGTATTGGGAGGGGCCGAAGGGCAATGGTGGGAGGCAGCCGTCTGTTCCTCCTCCTCCTCCTACCTTTGCTGCTGCTGCTGCTGGGCGCCGGCTGCAGAGATGGCCGCCGGTGCGCCGCCGCGGCCGCGCAGACTCAGAGGCTGCCGCAGCAAGAAGTTGAAGCACTTAA GGGAATAGCACGCAAGCTTAACAAGATGGATTGGGACTTCAG TGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTCATTCAAGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATTTCATCCAAGGACCAATTCCAGCATCATGGGCTAGCCTACCTGTTTTTAATCTGTCTCTCCAGGGAAATCGCATATCTGGAACAGTACCTAAGGAGCTTGGACGCATGC ] [+] EMBL CB964934 [ gggaataGCTGCGG CGCGCAGACTCAGAGGCTGCCGCAGCAAGAAG TGAAGCACTTAA GGGAATAGCACGCAAGCTTAACAAGATGGATTGGGACTTCAG TGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTTATTCAAGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATTT ] [+] EMBL CB966722 [ GACTCAGAGGCTGCCGCAGCAAGAAGTTGAAGCACTTAA GGGAATAGCACGCAAGCTTAACAAGATGGA TGGGACTTCAG TGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTTATTCAAGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATTT ] [+] EMBL CB966635 [ CAGAGGCTGCCGCAGCAAGAAGTTGAAGCACTTAA GGGAATAGCACGCAAGCTTAACAAGATGGA TGGGACTTCAG TGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTTATTCAAGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATTT ] [+] EMBL CB966364 [ CAGAGGCTGCCGCCGCCAGAAGTTGAAGCACTTAACGGGCATAGCACGCAAGCTTAACAAGATGGATTGGGACTTCAGCTGTGGATCC ] [+] EMBL CF305646 [ ATCAGAACTCACACTGGATCACCCTGAGTTATACACTGAAGCTCGCCTCTCACCCCTCTCACTGAAATACTATGGAGTCTGCATGGAAAATGGTGAATATTCTGTAGAACTTCATTTTGCTGAGATTGTGTTTACAGAAGATCATACTTTTTCCAGCAATGGCAAGCGCATTTTTGATGTTTTTATCCAGGGTACTAAAGTTTTGAAGGATTTTAACATTCAAGATGAGGCTGGTGGTGTCCATCGTGTAATTACAAAAACTTTCACAACCAACATCACAGATAATACATTGGAAATTCACTTCTACTGGGCAGGCAAAGGTACCACAGGTGTTCCTGACCGGGGTGTGTATGGTCCATTGATCTCAGCTATATCTGTGATACAATTAAACAGGAACCATCATGGAATCTCTACTGGATTGATGATTACTATAATAGTAGCAGCATGTTTGATTGTCATACTTGCGCTAATTCTTTGCTATATCAAATTCTTCCGGA ] [+] EMBL CF323604 [ GCCAAAACGATATAATATCTGCCTTGGAACAGCAAAAGGCTTGTGCTATCTCCATGAAGAATCAACATTGAAAATCATCCATAGAGATATTAAACCATCAAATATTCTTCTTGATGAAAGACTGCAACCGAAAATATCTGATTTTGGTTTGGCTAAACTGAATGATGACCGTGGGCGTATGAGCACTCGGATAGCTGGAACAGTTGGATACATGGCACCTGAGTATGCCACGAGAGGTTGCTTGACATGTAAAGCAGATGTATACAGTTTTGNGAGTGGTGACATTAGAGATTGTTAGTGGAATGAGCAATACAAGTAGCATGTCAGATGACGAATATCTCCATCTTCTTGACTGGGCTGAAAGATTGAAGCAGGAAGGGAGACTACTGGAAATCGTTGACCAGCGTCTTGGTTCTCACTACTCTCAAGAAGAAGCACTTAGGATGCTCAATGTAGCTCTTCTATGCACAAACACATCACCTGTTCAGAGGCCAAGAATGTCTTCGGTGGTGAGCATGCTCTGTGGC ] consensusID : consensus_12581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [ACCTCACTAAGGGTAGCTTGGGCGCAGACTCAGAGGCTGCGAGCAGAAGTGACACTTAAGGGAATCACGCAAGCTACAAGATGGATGGGACTTCAGGGGATCCATGCACGGGTCTAAAACTGGGTTAATGCCAGGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTCCAGTCAGCAATCTGACATGTGATGTTTATTCAAGAACAACACAGAGGTCATGTATCAGCTGGAACTTATGCGTCAGAATCTTAGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTGACTTATCACGCAATTT] [+] EMBL CB966511 [ACCTCACTAAGGGTAGCTTGGGCGCAGACTCAGAGGCTGCGAGCAGAAGTGACACTTAAGGGAATCACGCAAGCTACAAGATGGATGGGACTTCAGGGGATCCATGCACGGGTCTAAAACTGGGTTAATGCCAGGATTCCAATAGTTACCCAAAATCTAGTTATCCTAATTTCCAGTCAGCAATCTGACATGTGATGTTTATTCAAGAACAACACAGAGGTCATGTATCAGCTGGAACTTATGCGTCAGAATCTTAGGAGTTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTGACTTATCACGCAATTT] consensusID : consensus_12581#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 72 fasta sequence [CAGAGGACGAGACAAGGGGACTGGAAGCAGATATTGGAATCTGATGCTGCTGATGTGATGGTACAAAAAAAA] [+] EMBL CA765011 [CAGAGGACGAGACAAGGGGACTGGAAGCAGATATTGGAATCTGATGCTGCTGATGTGATGGTACAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12581#0 TGCGCCGCACAACCACAACCCATACGCAACTCCACCCAAAAACCAGCGTCGCATCGCACG 60 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CGCAAGCGCAGCACGAGCACAGTGAGGAGGAGCTTAGCTTAGCCTAGCTAGCTTAGCTCT 120 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ACCAAAAGCTCTCTGTAGCTTGCTTGCTGCCCAGTATTGGGAGGGGCCGAAGGGCAATGG 180 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TGGGAGGCAGCCGTCTGTTCCTCCTCCTCCTCCTACCTTTGCTGCTGCTGCTGCTGGGCG 240 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CCGGCTGCAGAGATGGCCGCCGGTGCGCCGCCGCGGCCGCGCAGACTCAGAGGCTGCCGC 300 consensus_12581#1 ---------------ACCTCACTAAGGGTAGCTTGG--GCGCAGACTCAGAGGCTGC--G 41 consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AGCAAGAAGTTGAAGCACTTAAGGGAATAGCACGCAAGCTTAACAAGATGGATTGGGACT 360 consensus_12581#1 AGCA-GAAGT---GACACTTAAGGGAAT--CACGCAAGCT--ACAAGATGGAT-GGGACT 92 consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TCAGTGTGGATCCATGCACTGGGTCTAAAACTTGGGTTAATGCCAGTGATTCCAATAGTT 420 consensus_12581#1 TCAGG--GGATCCATGCAC-GGGTCTAAAACT-GGGTTAATGCCAG-GATTCCAATAGTT 147 consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ACCCAAAATCTAGTTATCCTAATTTTCCAGTCAGCAATCTGACATGTGATTGTTCATTCA 480 consensus_12581#1 ACCCAAAATCTAGTTATCCTAATTT-CCAGTCAGCAATCTGACATGTGAT-GTTTATTCA 205 consensus_12581#2 ---------------------------------------------------------CAG 3 consensus_12581#0 AGAACAACACAGAGTGTCATGTTATCAGCTTGGAACTTATGCGTCAGAATCTTAGTGGAG 540 consensus_12581#1 AGAACAACACAGAG-GTCATGT-ATCAGCT-GGAACTTATGCGTCAGAATCTTA--GGAG 260 consensus_12581#2 AGGACGAGACAAGGGGAC-TGGAAGCAGAT----ATTGGAATCTGATGCTGCTGATGTGA 58 ** ** * *** * * * ** * *** * * * * * * * * consensus_12581#0 TTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCTTGACTTATCACGCAATT 600 consensus_12581#1 TTCTACCTGAAGAAGTTGTCAACCTCACTTATTTGACAAATCT-GACTTATCACGCAATT 319 consensus_12581#2 TGGTACAAAAAAAA---------------------------------------------- 72 * *** ** ** consensus_12581#0 TCATCCAAGGACCAATTCCAGCATCATGGGCTAGCCTACCTGTTTTTAATCTGTCTCTCC 660 consensus_12581#1 T----------------------------------------------------------- 320 consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AGGGAAATCGCATATCTGGAACAGTACCTAAGGAGCTTGGACGCATGCCCTTCTTGAAAT 720 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CTATAAATCTAGAAGGCAATCAGCTTGAGGGTCATATTCCACCAGAATTCGGTAACATCA 780 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TCAGTTTGGAGAGATTTTTCATTTCTGCAAATGACATCACAGGAGAGTTGCCTTCAACCT 840 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TTTCCAGGCTCACAAATATGACAGATTTCCGAATTGACGGGACCAATATCTCAGGAAGAA 900 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TACCCAGTTTCATAAAAAATTGGCAACGGGTCAACAGAATAGACATGCAGGGTACCTTGA 960 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGAACAACTTAACAGAACTGAGAGTGA 1020 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CTGATTTGAGTGGACCGAGCATGAAATTTCCTCCCTTACAAAATGCACAGCACCTTACAA 1080 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AAGTGGTCCTAAGAAACTGCTCCATATATGGTGAAATACCACCTTACCTTGGACAGATGC 1140 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AGTATCTAATACTCATGGATCTAAGCTTCAACAAGTTGACTGGTCAAATTCCACAAAATT 1200 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TTGACAGAATGGTGGCACTACAACTACAATATTTGTACTTAAGTGACAACATGCTGACTG 1260 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 GAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGGATGTGT 1320 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAACAAGCAAACGTAAATATGG 1380 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TTTCAAGTTTTTCATCCTCAAATGACAATCTTTTGCAACCATGTTTACGAAAGAATCTTC 1440 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CCTGCATGGACAAACCACGCTATTCCTCCCTATTTATTAACTGTGGTGGCAAAAGTGTTG 1500 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AGGTCAATGGGAATATTTATGAGGATGACTCATCTCGAATAGGAACATCAACTTTTGTTT 1560 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TATCAAATGACAGAAAATGGGCCTATAGTAGTACAGGAGATTTTGTGGGTAATCCAGATG 1620 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CTGATTACATTGCTAGAAACACATCAGAACTCACACTGGATCACCCTGAGTTATACACTG 1680 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AAGCTCGCCTCTCACCCCTCTCACTGAAATACTATGGAGTCTGCATGGAAAATGGTGAAT 1740 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ATTCTGTAGAACTTCATTTTGCTGAGATTGTGTTTACAGAAGATCATACTTTTTCCAGCA 1800 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ATGGCAAGCGCATTTTTGATGTTTTTATCCAGGGTACTAAAGTTTTGAAGGATTTTAACA 1860 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TTCAAGATGAGGCTGGTGGTGTCCATCGTGTAATTACAAAAACTTTCACAACCAACATCA 1920 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CAGATAATACATTGGAAATTCACTTCTACTGGGCAGGCAAAGGTACCACAGGTGTTCCTG 1980 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ACCGGGGTGTGTATGGTCCATTGATCTCAGCTATATCTGTGATACAATTAAACAGGAACC 2040 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ATCATGGAATCTCTACTGGATTGATGATTACTATAATAGTAGCAGCATGTTTGATTGTCA 2100 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TACTTGCGCTAATTCTTTGCTATATCAAATTCTTCCGGAAAAAGAATCTGAAAGGAAATG 2160 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 GTTTACAATTCTTTTACCATGGAAGGAAGACCGATACTTCAGATCTTCAGACACGGACAC 2220 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AGTACTTCTTTAGCTTAAAAGAAATTGAATCTGCAACGAAAAATTTTGATCCTGCAAATA 2280 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AAATTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGACGTGGAGATCATCAATTGAAACT 2340 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AGACTGGCCAAAACGATATAATATCTGCCTTGGAACAGCAAAAGGCTTGTGCTATCTCCA 2400 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TGAAGAATCAACATTGAAAATCATCCATAGAGATATTAAACCATCAAATATTCTTCTTGA 2460 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TGAAAGACTGCAACCGAAAATATCTGATTTTGGTTTGGCTAAACTGAATGATGACCGTGG 2520 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 GCGTATGAGCACTCGGATAGCTGGAACAGTTGGATACATGGCACCTGAGTATGCCACGAG 2580 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AGGTTGCTTGACATGTAAAGCAGATGTATACAGTTTTGGAGTGGTGACATTAGAGATTGT 2640 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TAGTGGAATGAGCAATACAAGTAGCATGTCAGATGACGAATATCTCCATCTTCTTGACTG 2700 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 GGCTGAAAGATTGAAGCAGGAAGGGAGACTACTGGAAATCGTTGACCAGCGTCTTGGTTC 2760 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TCACTACTCTCAAGAAGAAGCACTTAGGATGCTCAATGTAGCTCTTCTATGCACAAACAC 2820 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ATCACCTGTTCAGAGGCCAAGAATGTCTTCGGTGGTGAGCATGCTCTGTGGCCAAGCCCC 2880 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TCTAGAGGTTGTACCTGATGAAGATTTGAGTGGATACATCAGGCCCAGTTACTCCCAATC 2940 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CAATCAATCCATGAACAACAGCCTAACGGAGTGGTCCTACGCGCCATCGAGCGATCCTTC 3000 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 GATCTTGCTGCAGAACAGTATGGAGAGTGGTTACCTCCCATCTTCAAGCTCCCCTTCTTC 3060 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AAAGCTGTGAGCTGCAGCACCAGGATTAGCTAGGATGAAATGTTGGCAATTGTTTTGAGC 3120 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CCAATGCAGCAACTGTACATATGCATATGCATTTGCTCTGTCTGTAATCCCCTGTAGTTT 3180 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 GGCATTCTGTCAGTTGTCCTCAGCCTTCTCATCCATGGCATATGACAATTGATATCAATG 3240 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 ATGCATTGCCATGATGATATATTCTTCACAAGGGGACTGGAAGCAGATATTGGAATCTGA 3300 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TGCTGCTGATGTGATGGTACATATGAATTGAGCAACTTCTCAGGGGCACCACTTGAGTTT 3360 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 CTTGTTTGTTAGCCTTGGTCATCATGTATCTAGTAAATGCAATGTACAACTAATCTGTGC 3420 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 AAATGTGGATATCTAGTAAGTTTTTTTTTTTCTTTTCTTTTCTAGCTAGGAAGGTTATTG 3480 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 TTTGGTGGGCAAGTAGAGAAGACATGTAACATAATAACAGTTCAGTGCAAACTAGTTTCT 3540 consensus_12581#1 ------------------------------------------------------------ consensus_12581#2 ------------------------------------------------------------ consensus_12581#0 GCCCTTGTTAACTTAAAAAAGAAGGAAAAAGTAC 3574 consensus_12581#1 ---------------------------------- consensus_12581#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||