These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1148 fasta sequence [CATGGACTGAGGAGTAGAAACCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAATGAAAAAAAAAAAAAA] [+] EMBL CF319740 [CATGGACTGAGGAGTAGAAACCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGT ] [+] EMBL CF276905 [ ctttattCCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCAAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCGGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGT ] [+] EMBL CF321553 [ CCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAAAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGA ] [+] EMBL CF316823 [ CCACGCAGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCT ] [+] EMBL AK061250 [ AGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTG ] [+] EMBL AK099130 [ ACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTCGATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGCCTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAAGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGGATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCT ] [-] EMBL CF319741 [ AAGAAACTGAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTACTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCACAAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCATCAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGAAGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGCGAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACT ] [-] EMBL CF316824 [ GCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCCTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAA ] [-] EMBL CF321554 [ GCCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAAAAAAAAAAAAAA] [-] EMBL CF276906 [ CCAAAACAAGAGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCTCTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAAa ] consensusID : consensus_12586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [CACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAACGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAATGATCTGTGTACAAAAGAAAAGGCGTATATCAGGAGCATCTGGTGGAAGTGTCATTAACTTATCATGCAGGTAACAATTATTATCAACGAAGCTCTGTGACACTCTGTTAAACTGAAAAAA] [-] EMBL CF316292 [CACGAGAACAAAGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTTAGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGTAGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAATTGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTGCTGAACGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGATCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAATGATCTGTGTACAAAAGAAAAGGCGTATATCAGGAGCATCTGGTGGAAGTGTCATTAACTTATCATGCAGGTAACAATTATTATCAACGAAGCTCTGTGACACTCTGTTAAACTGAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12586#0 CATGGACTGAGGAGTAGAAACCCACTCCTCCCACCTCTCTCTCTCTCCTCCACACCACGC 60 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 AGACGCGCACCAACCCGCCGGCATTCGCGTCCGGATGCTTTGCTTTGCCCGCCGCGATTC 120 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 GATCCACGCCTGAGCGAGCGAGCGGGGCGAGCAACGCGCCCTTCCTTCCCTTGCCATGGC 180 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 CTCTTCACCGGCGAGCAGCTACGACTGCTCCTTCAAGATCCTGCTCATCGGGGACTCGGC 240 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 CGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAAT 300 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 CGCTCCCACCATAGGGGTTGACTTTAAAATCAAATTTCTCACTGTCAATGGGAAGAAACT 360 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 GAAGCTAACAATATGGGACACTGCTGGCCAGGAAAGGTTTAGGGGAATCACAAGTTCTTA 420 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 CTACAGAGGTGCCCATGGCATCATTCTAGTGTATGATGTCACAAAGAGAGAAAGTTTCAC 480 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 AAATTTGGCTGATGTATGGGCCAAGGAAATAGAATTGCATTCGACAAATAAAGAGTGCAT 540 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 CAAAATGCTTGTCGGGAACAAGGTGGACAAGAATGAGGAAAGGATGGTGACAAGGGAAGA 600 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 AGGTCTTGCCTTTGCCCAGGAATCTGGATGTCTTTTTCTTGAGAGCAGTGCCAAAACAAG 660 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 AGAAAATGTGGAGAAATGCTTTGAAGAGCTTGCGTTAAAGATTCTTGAGGTACCAAGTCT 720 consensus_12586#1 ------------------------------------------------------------ consensus_12586#0 CTTGGAGGAAGGTTCTTCAGTTGTCAAGAGGAACTCTCTGAAACAGAAGCACGAGAACAA 780 consensus_12586#1 -------------------------------------------------CACGAGAACAA 11 *********** consensus_12586#0 AGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTT 840 consensus_12586#1 AGCAAAAAATGGAGGATGCTGTCAGTAGTTCCGGTTGCTGTATGCGAGCTCATGATGCTT 71 ************************************************************ consensus_12586#0 AGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGT 900 consensus_12586#1 AGACCTAGCATGTTCTTGTGTACTGATGTAAATGATTTGTACCTAAATGCTTGTTGGTGT 131 ************************************************************ consensus_12586#0 AGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAAT 960 consensus_12586#1 AGCTGATGCGAGTTAAGAAGGAAATAACCACACGAAGTTTTTGGTGCGAACACTGGGAAT 191 ************************************************************ consensus_12586#0 TGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTG 1020 consensus_12586#1 TGATTTGTACAAAAGAAAAAGTTCTCCCTTCTAACTTCCTTCAGGTAGCAGTTTGGTGTG 251 ************************************************************ consensus_12586#0 CTGAATGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGA 1080 consensus_12586#1 CTGAACGTGCCAGGATCATGTCGACTAGTCTTGTTTTCTGGAAATGTACATGTAATGGGA 311 ***** ****************************************************** consensus_12586#0 TCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAAAAATGAAAAA- 1139 consensus_12586#1 TCCTGACAATTTGTCTTGCATATGGTGGAAGTATATATCTGGTGCATAATTCTGAATGAT 371 ************************************************* **** * consensus_12586#0 --------AAAAAAAAA------------------------------------------- 1148 consensus_12586#1 CTGTGTACAAAAGAAAAGGCGTATATCAGGAGCATCTGGTGGAAGTGTCATTAACTTATC 431 **** **** consensus_12586#0 --------------------------------------------------------- consensus_12586#1 ATGCAGGTAACAATTATTATCAACGAAGCTCTGTGACACTCTGTTAAACTGAAAAAA 488 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||