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Oryza sativa
cluster # 12594 cluster # 12594       Sequences # 11       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12594#0 length = 1952 sequences # 9  
 consensus_12594#1 length = 781 sequences # 1  
consensus_12594#2 length = 701 sequences # 1  
consensusID : consensus_12594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1952
fasta sequence 
                              [CCTTTGGTTAGTGCCATTGGTAGCCCCGCTCGGCGACGCCGACGCGATTTCCTCTCCTCGCGCCTTACTGAATTCGAAACGAAATTGTAGATCATATAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCAGACGCGGACCCCTTGATTTCTCGGCTAGATCTGAGATATCATCGCATCATGGGACTGCTGGGGTTGAATCGGCTCATGTCCATACAGCGGGAGCAGCGCTGTCGCCAAATCGAAGCCAATCGTCTTCTTGCATCCACTGATAAAAGAAAGGGGTCTCCCTGCAAACAAGATAATTCCCGATGCAGCAAAAGAGAGAGATATTCTCAGCCAGACCTTCCGGAGGACATTTGGCGCCATATACATTCCTTACTGTCACTTCAAGATGCTGCCCGTGCTGCTTGCGTGTCTCGGGCTTTTCTATGTTTATGGAGGTGCCGTCCCCACCTCACCTTCAGTTTGCAAACTCTGGGCTTGAGTGAAATGGCATGTAAAAAGGGTGGAATAGCTAGAGATTACAATAAAAAAGTTGACCGCATACTGAAAAAACACTCAGGCACAGGAATGAAGAAATTTGAGATCGAATTCTATGGTCCTTCAAATGCAAACACCTATTATCATCTCAATAATTGGCTTGAGATTGCTATTACATCTGGAATTGAAGAACTCACCCTTAGGTTGACTCCAGATGTGACAAAGTACAACTTCCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCACTGTTCCTTCCGTCCAACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCTATGTTTGGTGCGTATTACGGATAGAGAGTTAGGAATTCTCCTTTCCAATTCTTTAGTTTTGGAGAAGTTGGGAATCAAATACTGCGACAAGATTAATTGCCTGAAGATACCTTGTGTTCTAGAGAGGCTCAGTTCACTGGAAGTGTTTGAATGTTACAGCCTACAAATGGTAGAGAGCAAAGCTCCAAATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAACTTCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAACT--TTAAGGGATCCT-ATAT-ATCCAAGGCAAATGTCTGAAC-GCCAGCA-TGACA-GCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCT-AACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACA-T-TGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACA-GGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTGTGCCAAATCATTGT-AATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTT-TTAAAATCAGTGGTGTACTGGTGTCCATAAAAATGCTGAGGTATGTGCTTTGGTTTATTATTAATCTCTTTCTGT-ACTTAAGATG-GTCGGGA-TTTGNTCC-AGNTA-TGGGGGNCTGGTATATCAGGACTCTGCTTTGGTTATTTGAACTAAACCAACNGACCATCT]

[+] EMBL AK069930             [CCTTTGGTTAGTGCCATTGGTAGCCCCGCTCGGCGACGCCGACGCGATTTCCTCTCCTCGCGCCTTACTGAATTCGAAACGAAATTGTAGATCATATAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCAGACGCGGACCCCTTGATTTCTCGGCTAGATCTGAGATATCATCGCATCATGGGACTGCTGGGGTTGAATCGGCTCATGTCCATACAGCGGGAGCAGCGCTGTCGCCAAATCGAAGCCAATCGTCTTCTTGCATCCACTGATAAAAGAAAGGGGTCTCCCTGCAAACAAGATAATTCCCGATGCAGCAAAAGAGAGAGATATTCTCAGCCAGACCTTCCGGAGGACATTTGGCGCCATATACATTCCTTACTGTCACTTCAAGATGCTGCCCGTGCTGCTTGCGTGTCTCGGGCTTTTCTATGTTTATGGAGGTGCCGTCCCCACCTCACCTTCAGTTTGCAAACTCTGGGCTTGAGTG AATGGCATGTAAAAAGGGTGGAATAGCTAGAGATTACAATAAAAAAGTTGACCGCATACTGAAAAAACACTCAGGCACAGGAATGAAGAAATTTGAGATCGAATTCTATGGTCCTTCAAATGCAAACACCTATTATCATCTCAATAATTGGCTTGAGATTGCTATTACATCTGGAATTGAAGAACTCACCCTTAGGTTGACTCCAGATGTGACAAAGTACAACTTCCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCACTGTTCCTTCCGTCCAACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCTATGTTTGGTGCGTATTACGGATAGAGAGTTAGGAATTCTCCTTTCCAATTCTTTAGTTTTGGAGAAGTTGGGAATCAAATACTGCGACAAGATTAATTGCCTGAAGATACCTTGTGTTCTAGAGAGGCTCAGTTCACTGGAAGTGTTTGAATGTTACAGTCTACAAATGGTAGAGAGCAAAGCTCCAAATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAACTTCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGCTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGGGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAACT  TTAAGGGATCCT ATAT ATCCAAGGCAAATGTCTGAAC GCCAGCA TGACA GCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCT AACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACA T TGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACA GGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTATGCCAAATCATTGT AATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTT TTAAAATCAGTGGTGTACTGGTGTCCATAAAAATGCTGAGGTATGTGCTTTGGTTTATTATTAAT                                                                                                         ]
[+] EMBL CB660470             [                          CGCTCGGCGACGCCGACGCGATTTCCTCTCCTCGCGCCTTACTGAATTCGAAACGAAATTGTAGATCATATAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCAGACGCGGACCCCTTGATTTCTCGGCTAGATCTGAGATATCATCGCATCATGGGACTGCTGGGGTTGAATCGGCTCATGTCCATACAGCGGGAGCAGCGCTGTCGCCAAATCGAAGCCAATCGTCTTCTTGCATCCACTGATAAAAGAAAGGGGTCTCCCTGCAAACAAGATAATTCCCGATGCAGCAAAAGAGAGAGATATTCTCAGCCAGACCTTCCGGAGGACATTTGGCGCCATATACATTCCTTACTGTCACTTCAAGATGCTGCCCGTGCTGCTTGCGTGTCTCGGGCTTTTCTATGTTTATGGAGGTGCCGTCCCCACCTCACCTTCAGTTTGCAAACTCTGGGCTTGAGTGAAATGGCATGTAAAAAGGGTGGAATAGCTAGAGATTACAATAAAAAAGTTGACCGCATACTGAAAAAACACTCAGGCACAGGAATGAAGAAATTTGAGATCGAATTCTATGGTCCTTCAAATGCAAACACCTATTATCATCTCAATAATTGGCTTGAGATTGCTATTACATCTGGAATTGAAGAACTCACCCTTAGGTTGACTCCAGATGTGACAAAGTACAACTTCCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCACTGTTCCTTCCGTCCAACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCTATGTTTGGTGCGTATTACGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB620350             [                                                                            AAACCAAATTGTAGATCATATAGC      AGAGAGAGAGAGAGAGAGAGAGAGGAAGCAGACGCGGACCCCTTGATTTCTCGGCTAGATCTGAGATATCATCGCATCATGGGACTGCTGGGGTTGAATCGGCTCATGTCCATACAGCGGGAGCAGCGCTGTCGCCAAATCGAAGCCAATCGTCTTCTTGCATCCACTGATAAAAGAAAGGGGTCTCCCTGCAAACAAGATAATTCCCGATGCAGCAAAAGAGAGAGATATTCTCAGCCAGACCTTCCGGAGGACATTTGGCGCCATATACATTCCTTACTGTCACTTCAAGATGCTGCCCGTGCTGCTTGCGTGTCTCGGGCTTTTCTATGTTTATGGAGGTGCCGTCCCCACCTCACCTTCAGTTTGCAAACTCTGGGCTTGAGTGAAATGGCATGTAAAAAGGGTGGAATAGCTAGAGATTACAATAAAAAAGTTGACCGCATACTGAAAAAACACTCAGGCACAGGAATGAAGAAATTTGAGATCGAATTCTATGGTCCTTCAAATGCAAACACCTATTATCATCTCAATAATTGGCTTGAGATTGCTATTACATCTGGAATTGAAGAACTCACCCTTAGGTTGACTCCAGATGTGACAAAGTACAACTTCCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCACTGTTCCTTCCGTCCCACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCTATGTTTGGTGCGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB670744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCACCTCACCTTCAGTTTGCAAACTCTGGGCTTGAGTGAAATGGCATGTAAAAAGGGTGGAATAGCTAGAGATTACAATAAAAAAGTTGACCGCATACTGAAAAAACACTCAGGCACAGGAATGAAGAAATTTGAGATCGAATTCTATGGTCCTTCAAATGCAAACACCTATTATCATCTCAATAATTGGCTTGAGATTGCTATTACATCTGGAATTGAAGAACTCACCCTTAGGTTGACTCCAGATGTGACAAAGTACAACTTCCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCACTGTTCCTTCCGTCCAACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCTATGTTTGGTGCGTATTACGGATAGAGAGTTAGGAATTCTCCTTTCCAATTCTTTAGTTTTGGAGAAGTTGGGAATCAAATACTGCGACAAGATTAATTGCCTGAAGATACCTTGTGTTCTAGAGAGGCTCAGTTCACTGGAAGTGTTTGAATGTTACAGCCTACAAATGGTAGAGAGCAAAGCTCCAAATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAACTTCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA998256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGGTTGACTCCAGATGTGACAAAGTACAACTTCCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCACTGTTCCTTCCGTCCAACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCTATGTTTGGTGCGTATTACGGATAGAGAGTTAGGAATTCTCCTTTCCAATTCTTTAGTTTTGGAGAAGTTGGGAATCAAATACTGCGACAAGATTAATTGCCTGAAGATACCTTGTGTTCTAGAGAGGCTCAGTTCACTGGAAGTGTTTGAATGTTACAGCCTACAAATGGTAGAGAGCAAAGCTCCAAATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAACTTCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB660471             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAATGTTACAGCCTACAAATGGTAGAGAGCAAAGCTCCAAATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAACTTCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAACT  TTAAGGGATCCT ATAT ATCCAAGGCAAATGTCTGAAC GCCAGCA TGACA GCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCT AACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACA T TGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACA GGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTATGCCAAATCAGTGT AATTAAACAGTAT                                                                                                                                                                                                                ]
[+] EMBL CB097193             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTTCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCCTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAACT  TTAAGGGATCCT ATAT ATCCAAGGCAAATGTCTGAAC GCCAGCA TGACA GCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCT AACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACA T TGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACA GGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTGTGCCAAATCATTGT AATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGNT TTAAAATTAGTGGTGTACTGGTGTCCATAAAAATGCTGANGNATGTGCTTNGG TTATTATTAATCTCTTTCTGT ACTTAAGATG GTCGGGA TTTGNTCC AGNTA TGGGGGNCTGGTATATCAGGACTCTGCTTTGGTTATTTGAACTAAACCAACNGACCATCT]
[+] EMBL BM038705             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAAGCATGACTTAACTTGTTAAGGGATCCTGATATNATCCGAGGCCAATGTCTGAAC GCCAGCACTGACACNCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCAC AAAAGCTTGGTTGAGCT AACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACACTGTGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACA GGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTGTGCCAAATCATTGTGAATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTTGTTAAAATCAGTGGTGTACTGGGGTCCATAAAAATGCTGAGGTATGTGCTTTGGTTTATTATTAATCTCTTTCTGTAACTTAAGATGTGTCGTGATTTTGTTCCAAGTTATTGGTGGTCTGTTATATtcaaaa                                      ]
[+] EMBL BI812500             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTAAGGGATCCT ATAT ATCC AGCCAAATGTCTGAACGGCCAGCA TGACA GCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACCAAAAGCTTGGTTGAGCTGAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACACT TGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACACGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTGTGCCAAATCATTGT AATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTT TTAAAATCAGTGGTGTACTGGTGTCCATAAAAATGCTGAGGTATGTGCTTTGGTTTATTATTAATCTCTTTCTGT Aaaaaa                                                                                        ]




>consensus_12594#0
CCTTTGGTTAGTGCCATTGGTAGCCCCGCTCGGCGACGCCGACGCGATTTCCTCTCCTCG
CGCCTTACTGAATTCGAAACGAAATTGTAGATCATATAGCAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGGAAGCAGACGCGGACCCCTTGATTTCTCGGCTAGATCTGAGATATCATCG
CATCATGGGACTGCTGGGGTTGAATCGGCTCATGTCCATACAGCGGGAGCAGCGCTGTCG
CCAAATCGAAGCCAATCGTCTTCTTGCATCCACTGATAAAAGAAAGGGGTCTCCCTGCAA
ACAAGATAATTCCCGATGCAGCAAAAGAGAGAGATATTCTCAGCCAGACCTTCCGGAGGA
CATTTGGCGCCATATACATTCCTTACTGTCACTTCAAGATGCTGCCCGTGCTGCTTGCGT
GTCTCGGGCTTTTCTATGTTTATGGAGGTGCCGTCCCCACCTCACCTTCAGTTTGCAAAC
TCTGGGCTTGAGTGAAATGGCATGTAAAAAGGGTGGAATAGCTAGAGATTACAATAAAAA
AGTTGACCGCATACTGAAAAAACACTCAGGCACAGGAATGAAGAAATTTGAGATCGAATT
CTATGGTCCTTCAAATGCAAACACCTATTATCATCTCAATAATTGGCTTGAGATTGCTAT
TACATCTGGAATTGAAGAACTCACCCTTAGGTTGACTCCAGATGTGACAAAGTACAACTT
CCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCA
CTGTTCCTTCCGTCCAACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCT
ATGTTTGGTGCGTATTACGGATAGAGAGTTAGGAATTCTCCTTTCCAATTCTTTAGTTTT
GGAGAAGTTGGGAATCAAATACTGCGACAAGATTAATTGCCTGAAGATACCTTGTGTTCT
AGAGAGGCTCAGTTCACTGGAAGTGTTTGAATGTTACAGCCTACAAATGGTAGAGAGCAA
AGCTCCAAATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGA
ACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGC
TGAACTTCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGAT
GTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTT
TGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGC
TTCTCCTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAAC
TTTAAGGGATCCTATATATCCAAGGCAAATGTCTGAACGCCAGCATGACAGCCTAAAGAA
TGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCTAACATGCCATATTCT
TCAGAACACAACTTCGCTTGAGTGCCTTACATTGGACACTACTCGCATTGAGTTTCGGTG
TTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACAGGGATGCTATCAAGGGAGCGCA
TAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTT
CAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTGTGCCAAATCATTGTAAT
TAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTTTTAAAATCAGTGG
TGTACTGGTGTCCATAAAAATGCTGAGGTATGTGCTTTGGTTTATTATTAATCTCTTTCT
GTACTTAAGATGGTCGGGATTTGNTCCAGNTATGGGGGNCTGGTATATCAGGACTCTGCT
TTGGTTATTTGAACTAAACCAACNGACCATCT

consensusID : consensus_12594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence 
                              [CACATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAACTTCCATTTAGTATGCGTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATATATCCAAGGCAAATGTCTGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACATTGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTTTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTATGCCAAATCATTGTAATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTTTTAAAAAAAAAAAAAGGAA]

[-] EMBL CB670745             [CACATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAACTTCCATTTAGTATGCGTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATATATCCAAGGCAAATGTCTGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACATTGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTTTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTATGCCAAATCATTGTAATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTTTTAAAAAAAAAAAAAGGAA]




>consensus_12594#1
CACATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGAACCGC
TGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGCTGAAC
TTCCATTTAGTATGCGTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGATGTCCC
ATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTTTGCGG
GATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTC
CTTTGTTGGAGACTTTCATCCTATGTATTTTACAGAAAGGAAAGCATGACTTAACTTTAA
GGGATCCTATATATCCAAGGCAAATGTCTGAACGCCAGCATGACAGCCTAAAGAATGTGA
AGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCTAACATGCCATATTCTTCAGA
ACACAACTTCGCTTGAGTGCCTTACATTGGACACTACTCGCATTGAGTTTCGGTGTTCTG
ATAGTAGTGTTGATGTATGTCTCCCATCGGACAGGGATGCTATCAAGGGAGCGCATAAAG
CGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTACAGTCAAGTTCAGTG
TTTTAGAGCCTTGCCGCCGTTGCTACGCTTGGTAACTATGCCAAATCATTGTAATTAAAC
AGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTTTCTGTTTTAAAAAAAAAAAAAGGA
A

consensusID : consensus_12594#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence 
                              [GTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTTCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTGTGAGTTACTATTCATTCTGCAAGGCATATTTAGTAACTGTGCCATTTATAATTTATTGACATATCATCATTGGTTTTCACCTTCAGATTTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATATATCCAAGGCAAATGTCTGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACATTGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTCCAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTGGGCTTGGTAACTGTGCCAAATCATTGTAATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTATGGGTTTTAAAATCAGT]

[-] EMBL CB620351             [GTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTTCTTCACCTCAGATACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTGTGAGTTACTATTCATTCTGCAAGGCATATTTAGTAACTGTGCCATTTATAATTTATTGACATATCATCATTGGTTTTCACCTTCAGATTTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATATATCCAAGGCAAATGTCTGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAGCTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACATTGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATCGGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGAGGGTATAGTTCCCGCTCCAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTGGGCTTGGTAACTGTGCCAAATCATTGTAATTAAACAGTATTTAATTGTGTAACTTCAGATGCGTTGTGCTATGGGTTTTAAAATCAGT]




>consensus_12594#2
GTTCACGTTGTGAGATGTCCCATACACCAACTGCACCTGGCAAATTTCTTCACCTCAGAT
ACTTGAGTATTACTTTTGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTG
TTTCTTTTCTTGATGCTTCTCCTTTGTTGGAGACTTTCATCCTATGTGTGAGTTACTATT
CATTCTGCAAGGCATATTTAGTAACTGTGCCATTTATAATTTATTGACATATCATCATTG
GTTTTCACCTTCAGATTTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATAT
ATCCAAGGCAAATGTCTGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTT
TCAGTTCCACAAAAAGCTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGC
TTGAGTGCCTTACATTGGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTG
ATGTATGTCTCCCATCGGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTA
TCAGAACATATATTGAGGGTATAGTTCCCGCTCCAGTCAAGTTCAGTGTTCTAGAGCCTT
GCCGCCGTTGCTGGGCTTGGTAACTGTGCCAAATCATTGTAATTAAACAGTATTTAATTG
TGTAACTTCAGATGCGTTGTGCTATGGGTTTTAAAATCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12594#0      CCTTTGGTTAGTGCCATTGGTAGCCCCGCTCGGCGACGCCGACGCGATTTCCTCTCCTCG 60
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      CGCCTTACTGAATTCGAAACGAAATTGTAGATCATATAGCAGAGAGAGAGAGAGAGAGAG 120
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      AGAGAGAGAGGAAGCAGACGCGGACCCCTTGATTTCTCGGCTAGATCTGAGATATCATCG 180
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      CATCATGGGACTGCTGGGGTTGAATCGGCTCATGTCCATACAGCGGGAGCAGCGCTGTCG 240
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      CCAAATCGAAGCCAATCGTCTTCTTGCATCCACTGATAAAAGAAAGGGGTCTCCCTGCAA 300
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      ACAAGATAATTCCCGATGCAGCAAAAGAGAGAGATATTCTCAGCCAGACCTTCCGGAGGA 360
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      CATTTGGCGCCATATACATTCCTTACTGTCACTTCAAGATGCTGCCCGTGCTGCTTGCGT 420
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      GTCTCGGGCTTTTCTATGTTTATGGAGGTGCCGTCCCCACCTCACCTTCAGTTTGCAAAC 480
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      TCTGGGCTTGAGTGAAATGGCATGTAAAAAGGGTGGAATAGCTAGAGATTACAATAAAAA 540
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      AGTTGACCGCATACTGAAAAAACACTCAGGCACAGGAATGAAGAAATTTGAGATCGAATT 600
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      CTATGGTCCTTCAAATGCAAACACCTATTATCATCTCAATAATTGGCTTGAGATTGCTAT 660
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      TACATCTGGAATTGAAGAACTCACCCTTAGGTTGACTCCAGATGTGACAAAGTACAACTT 720
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      CCCTTGCTCACTTTTATCTGATGGAAGAGGGGACTTGATTCAGTCTCTTCACCTTTCCCA 780
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      CTGTTCCTTCCGTCCAACAGTTGAGGTTGTTAGCTTGAGAAGCCTGACAAGTTTAGATCT 840
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      ATGTTTGGTGCGTATTACGGATAGAGAGTTAGGAATTCTCCTTTCCAATTCTTTAGTTTT 900
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      GGAGAAGTTGGGAATCAAATACTGCGACAAGATTAATTGCCTGAAGATACCTTGTGTTCT 960
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      AGAGAGGCTCAGTTCACTGGAAGTGTTTGAATGTTACAGCCTACAAATGGTAGAGAGCAA 1020
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      AGCTCCAAATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGA 1080
consensus_12594#1      -----CACATTTATGCAGTTTTTGCTTTGGAGGTGAACAGGTACAGTTCTCAATTGGAGA 55
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      ACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGC 1140
consensus_12594#1      ACCGCTGCAAATGAAGAACCTGCAAGTGATCTTCCCCAACAGTATCAGTTTTGGCCGTGC 115
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      TGAACTTCCATTTAGTATGCCTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGAT 1200
consensus_12594#1      TGAACTTCCATTTAGTATGCGTAATCTTGAAACTCTTAATATCAGTTCACGTTGTGAGAT 175
consensus_12594#2      --------------------------------------------GTTCACGTTGTGAGAT 16
                                                                   ****************

consensus_12594#0      GTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTT 1260
consensus_12594#1      GTCCCATACACCAACTGCACCTGGCAAATTCCTTCACCTCAGATACTTGAGTATTACTTT 235
consensus_12594#2      GTCCCATACACCAACTGCACCTGGCAAATTTCTTCACCTCAGATACTTGAGTATTACTTT 76
                       ****************************** *****************************

consensus_12594#0      TGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGC 1320
consensus_12594#1      TGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGC 295
consensus_12594#2      TGCGGGATGGAGATTTTCACGTGCCTACGATTATTTTTCTCTTGTTTCTTTTCTTGATGC 136
                       ************************************************************

consensus_12594#0      TTCTCCTTTGTTGGAGACTTTCATCCTATGT----------------------------- 1351
consensus_12594#1      TTCTCCTTTGTTGGAGACTTTCATCCTATGT----------------------------- 326
consensus_12594#2      TTCTCCTTTGTTGGAGACTTTCATCCTATGTGTGAGTTACTATTCATTCTGCAAGGCATA 196
                       *******************************                             

consensus_12594#0      ----------------------------------------------------------AT 1353
consensus_12594#1      ----------------------------------------------------------AT 328
consensus_12594#2      TTTAGTAACTGTGCCATTTATAATTTATTGACATATCATCATTGGTTTTCACCTTCAGAT 256
                                                                                 **

consensus_12594#0      TTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATATATCCAAGGCAAATGTC 1413
consensus_12594#1      TTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATATATCCAAGGCAAATGTC 388
consensus_12594#2      TTTACAGAAAGGAAAGCATGACTTAACTTTAAGGGATCCTATATATCCAAGGCAAATGTC 316
                       ************************************************************

consensus_12594#0      TGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAG 1473
consensus_12594#1      TGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAG 448
consensus_12594#2      TGAACGCCAGCATGACAGCCTAAAGAATGTGAAGATCAATGGTTTCAGTTCCACAAAAAG 376
                       ************************************************************

consensus_12594#0      CTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACATT 1533
consensus_12594#1      CTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACATT 508
consensus_12594#2      CTTGGTTGAGCTAACATGCCATATTCTTCAGAACACAACTTCGCTTGAGTGCCTTACATT 436
                       ************************************************************

consensus_12594#0      GGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATC 1593
consensus_12594#1      GGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATC 568
consensus_12594#2      GGACACTACTCGCATTGAGTTTCGGTGTTCTGATAGTAGTGTTGATGTATGTCTCCCATC 496
                       ************************************************************

consensus_12594#0      GGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGA 1653
consensus_12594#1      GGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGA 628
consensus_12594#2      GGACAGGGATGCTATCAAGGGAGCGCATAAAGCGCTCTTGGCTATCAGAACATATATTGA 556
                       ************************************************************

consensus_12594#0      GGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTACGC 1713
consensus_12594#1      GGGTATAGTTCCCGCTACAGTCAAGTTCAGTGTTTTAGAGCCTTGCCGCCGTTGCTACGC 688
consensus_12594#2      GGGTATAGTTCCCGCTCCAGTCAAGTTCAGTGTTCTAGAGCCTTGCCGCCGTTGCTGGGC 616
                       **************** ***************** *********************  **

consensus_12594#0      TTGGTAACTGTGCCAAATCATTGTAATTAAACAGTATTTAATTGTGTAACTTCAGATGCG 1773
consensus_12594#1      TTGGTAACTATGCCAAATCATTGTAATTAAACAGTATTTAATTGTGTAACTTCAGATGCG 748
consensus_12594#2      TTGGTAACTGTGCCAAATCATTGTAATTAAACAGTATTTAATTGTGTAACTTCAGATGCG 676
                       ********* **************************************************

consensus_12594#0      TTGTGCTTTCTGTTTTAAAATCAGTGGTGTACTGGTGTCCATAAAAATGCTGAGGTATGT 1833
consensus_12594#1      TTGTGCTTTCTGTTTTAAAAAAAAAAAAAGGAA--------------------------- 781
consensus_12594#2      TTGTGCTATGGGTTTTAAAATCAGT----------------------------------- 701
                       ******* *  *********  *                                     

consensus_12594#0      GCTTTGGTTTATTATTAATCTCTTTCTGTACTTAAGATGGTCGGGATTTGNTCCAGNTAT 1893
consensus_12594#1      ------------------------------------------------------------
consensus_12594#2      ------------------------------------------------------------
                                                                                   

consensus_12594#0      GGGGGNCTGGTATATCAGGACTCTGCTTTGGTTATTTGAACTAAACCAACNGACCATCT 1952
consensus_12594#1      -----------------------------------------------------------
consensus_12594#2      -----------------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)