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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 923 fasta sequence
[ATAAAGCAGTC-CATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA-TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT-GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG-CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC--CAGCCTG-C-TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC-TGGTCTTGGT-CGTCGCCACCA-CCAGCCGGGAGATG-CCGCCGCGGCAGAACGGGCAGGTCGGCA-GCGGCTGCTGG--CACGGCGTCGCCGCCGCCGCGCTGGGCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCCGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAACTGCCAACGGCGACGCGCTCCTGGGGAGCAGCAGGACATGAACCGGAGAGAGAGTGGGGGAGTGGGTGTGGGTGTGTGTTGTGTCCAGCGAGCCACAG]
[+] EMBL CB637612 [ATAAAGCAGTC CATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTTATATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATTTTTTTTA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGG ]
[+] EMBL CB647801 [ AAAGCAGTCACATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC TGGTCTTGGT CGTCGCCACCA CCAGCCGGGAGATG CCGCCGCGGCAGAACGGGCAGGTCGGCA GCGGCTGCTGG CACGGCGTCGCCGCCGCCGCGCTGGGCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTG ]
[-] EMBL BI808624 [ tttttttttTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC CAGCCTGTC TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTCGTGGTCTGGGTCCGTCGCCACCACCCAGCCGGGAGATGCCCGCCG GGCAGACCGGGCAGGTCGGCACGCGGCTGCTGGGCCACGGCGTCG CG CGCCGCGCTGG ]
[-] EMBL BQ906742 [ tttttttttTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAACTAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCGCCCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCG CTGC ]
[-] EMBL BM422032 [ tttttttTGC AGGACTG TTATTTGGATTTACACAGCGTAATACAGCATGGGTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCGGNTGAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TG CCG CTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC TGGTCTTGGT CGTCGCCA CA CCAGCCGGGAGATG CCGCCGCGGCAGAACGGGCAGGTCGGCA GCGGCTGCTGG CACGGCGTCGCCGCCGCCG ]
[-] EMBL BM419196 [ TTTTTGAGGAAAAAATAATAGTAA TAATCTNCAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGGGTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGC CCCACGCGTCCGCCCA CGCGTCCGCCCACGCGTCcgcggacgc ]
[-] EMBL AU222871 [ GAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC TGGTCTTGGT CGTCGCCACCA CCAGCCGGGAGATG CCGCCGCGGCAGAACGGGCAGGTCGGCA GCGGCTGCTGG CACGGCGTCGCCGCCGCCGCGCTGGGCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCCGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAACTGCCAACGGCGACGCGCTCCTGGGGAGCAGCAGGACATGAACCGGAGAGAGAGTGGGGGAGTGGGTGTGGGTGTGTGTTGTGTCCAGCGAGCCACAG]
consensusID : consensus_12610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 844 fasta sequence
[TTTTTTTTTTTTTTTTGATTTGGGT-TCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATG-CAAGGACTGCTTATTTGG-ATTTACACAGCGTAATACAGCATGGCT-CAAATCTACACAGATGG-AATAGCTCATTTTCTTGAGGAAAAA-ATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGCCGATC-GGTTGAAGAAGACTAC-G-ACGACGACGACAATGGCTTGTACCAGGATG-ATCGT-GTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT-GTCGGTTC-GCCGTCT-GCCCATCTTCCCGATCGACGACGCAATGCTG-CCCATGATGCTGCT-GGT-GC-TGCC-GCCGT-CGCCGCTGGGGTGGTTCACCGCCCGGCGAGACATCCCTTGTGCAAGTGGATGAACAGCCAAGCGTGATTGGCCCAGCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGTCCGCCGACGACGGGTTCAGCAGCGCGGCGCACGCGACGTGCCCTCGCTTCATCGCCACCTCGTACGGAATCCTCCCGACGGAGTCTCGCTGGAGGCGGTCGGCGCGCTGGGTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCAGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAANCCAAC]
[-] EMBL AU070662 [TTTTTTTTTTTTTTTTGTTTTGGGT TCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATG CAAGGACTGCTTATTTGG ATTTACACAGCGTAATACAGCATGGCT CAAATCTACACAGATGG AATAGCTCATTTTCTTGAGGAAAAA ATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGCCGATC GGTTGAAGAAGACTAC G ACGACGACGACAATGGCTTGTACCAGGATG ATCGT GTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT GTCGGTTC GCCGTCT GCCCATCTTCCCGATCGACGACGCAATGCTG CCCATGATGCTGCT GGT GC TGCC GCNGT CGCCGCTGGGGTGGTTCACCGCCCGGCGAGA ]
[-] EMBL BM420370 [ TTTTTTTTTTGATGGGGGTGGCTGATTATCATATCGGTCCAAATCTCTGAA CTGG ATTTACAAATTTTCAAGAACTCCACTGGAAGTGNTGGGGG TA CAAG ATG AAGGACTGGTTATTTGG ATTTACACAGGGTAATACAGCATGG T CAAATCTACACAGATGG AATAGGTCATTTTCTTGAGGAAAAA ATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGGCGATCTGGTTGAAGAAGACTACTG ACGA GACGACAATGGCTTGTACCAGGATG ATCGT GTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT GTCGGTTCAGCCGTCT G CCATCTTCCCGATCGACGACGCAATGCTG CCATGATGCTG T GGT GC TG C G CGT CGCCGCTGGGGTGGTTCAACGCCGGGAGAACCATCCCTTGTGCAAGTGGATGAACAGCCAAGCGTGATTGGCCCAG ]
[-] EMBL BQ907837 [ TTTTTTTTTTG TTGGGT TCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCCAAGGACTGCTTATTTGGCATTTACACAGCGTAATACAGCATGGCTCCAAATCTACACAGATGGCAATAGCTCATTTTCTTGAGGAAAAACATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGCCGATC GGTTGAAGAAGACTAC GCACGACGACGACAATGGCTTGTACCAGGATG ATCGTAGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCTAGTCGGTTC GCCGTCTAGGCCATCTTCCCGATCGACGACGCAATGCTG CCCATGATGCTGCTAGGTAGCTTGCCAGCCGTACGCCG ]
[-] EMBL AU162563 [ AGAAGACTAC G ACGACGACGACAATGGCTTGTACCAGGATGAATCGT GTCCACTCTGACTCGATCCGATGANTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT GTCGGTTC GCCGTCT GCCCATCTTCCCGATCGACGACGCAATGCTGCCCCATGATGCTGCT GGT GC TGCC GCCGT CGCCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCC TGTGC AGCGG CG AC GCC AGCCTGCT GCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGTCCGCCGACGACGGGTTCAGCAGCGCGGCGCACGCGACGTGCCCTCGCTTCATCGCCACCTCGTACGGAATCCTCCCGACGGAGTCTCGCTGGAGGCGGTCGGCGCGCTGGGTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCAGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAANCCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12610#0 ATAAAGCAGTCCATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAA 60
consensus_12610#1 ----TTTTTTTTTTTTTTTTGATTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAA 56
* * **** **************************************
consensus_12610#0 CCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCA 120
consensus_12610#1 CCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCA 116
************************************************************
consensus_12610#0 AGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGG 180
consensus_12610#1 AGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGG 176
************************************************************
consensus_12610#0 AATAGCTCATTTTCTTGAGGAAAAAATAATAGTAATAATCTACAAAAAATAGTAGCTCAT 240
consensus_12610#1 AATAGCTCATTTTCTTGAGGAAAAAATAATAGTAATAATCTACAAAAAATAGTAGCTCAT 236
************************************************************
consensus_12610#0 TTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCG 300
consensus_12610#1 TTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCG 296
************************************************************
consensus_12610#0 TGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTC 360
consensus_12610#1 TGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTC 356
************************************************************
consensus_12610#0 GCTGCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGAT 420
consensus_12610#1 GCTGCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGAT 416
************************************************************
consensus_12610#0 GCTGCTGGTGCTGCCGCCGTCGCCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCC--TG 478
consensus_12610#1 GCTGCTGGTGCTGCCGCCGTCGCCGCTGGGGTGGTTCACCGCCCGGCGAGACATCCCTTG 476
**************************************************** *** **
consensus_12610#0 TGCAGCGGCGACGCCAGCC-----TGCT--GCCCGCCTCCTCGTCGTCCTCCTCGTCGTC 531
consensus_12610#1 TGCAAGTGGATGAACAGCCAAGCGTGATTGGCCCAGCTCCTCGTCGTCCTCCTCGTCGTC 536
**** * ***** ** * **** ************************
consensus_12610#0 GCCGCCTGCTC--TGGTCTTGGTCGTCGCCAC-CACCAGCCGGGAGATGCCGCCGCGGCA 588
consensus_12610#1 GCCGCCTGTCCGCCGACGACGGGTTCAGCAGCGCGGCGCACGCGACGTGCCCTCGCTTCA 596
******** * * ** ** * * * ** ** **** *** **
consensus_12610#0 GAACGGGCAGGTCGGCAGCGGCTGCTGGCACGGCGTCGCCG-------CCGCCGCGCTGG 641
consensus_12610#1 TCGCCACCTCGTACGGAATC-CTCCCGACGGAGTCTCGCTGGAGGCGGTCGGCGCGCTGG 655
* * ** * * ** * * * * **** * ** ********
consensus_12610#0 GCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCC 701
consensus_12610#1 G-TTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCC 714
* **********************************************************
consensus_12610#0 GCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCCGGCCG 761
consensus_12610#1 GCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCAGGCCG 774
****************************************************** *****
consensus_12610#0 CCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATG 821
consensus_12610#1 CCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATG 834
************************************************************
consensus_12610#0 GCAACTGCCAACGGCGACGCGCTCCTGGGGAGCAGCAGGACATGAACCGGAGAGAGAGTG 881
consensus_12610#1 GCAAN--CCAAC------------------------------------------------ 844
**** *****
consensus_12610#0 GGGGAGTGGGTGTGGGTGTGTGTTGTGTCCAGCGAGCCACAG 923
consensus_12610#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||