These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1531 fasta sequence [TGAGAAGTCCATTCGGACTGCTGCGTGAGAACAACGCGCGTACGGGCGGCGCCGACTTCGACGTCGACGCGGACTCCCTCCTCCACGCTCGCCGGCGGCCGGAAGCTCCTCCGGGTGAAGGCGTCAGATTACCTTGCAGCCACCAACTAATTCATGGAGTCGGCAGAGGTGGCTGCTTCTTCCACATTCGGGCCTACCCCAGAGATGGAGAAGTTCCTGTGCGATCTGCTGCTTGACACGGCACAGCCCATCGCTGAACGCTTCCGTGCGCTCTTCTCCCTCCGCAACCTCCATGGTGATGGCCCCCGCTGCGCCCTCCTCCAAGCTGCAAGGGATTCTTCTAACTTGCTTGCCCATGAGGCTGCTTTTGCACTTGGACAAATGCAAGATGCTGAGGCTATCCCTGCGTTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGCCATGAGGCTGCGGAAGCCCTTGGTGCTATTGGCCTGGAGAAGAGCATTCCCCTGCTTGAGGAGAGTTTAGCTGCTGATCCTGCCGTGGAGGTTCAGGAAACATGTGAGCTGGCTCTTAGGCGGATAGAACAACAAAAGAATGCTGGTGTTTCTGAAAGCACAACCATTTCACCATTTCTCTCAGTTGATCCAGCATTACCTGCAAAGCAAGGACTTTCGGTACACCAACTAAGGGAGATTCTTCTCAACGAACAAGAAAGCATGTATGAACGTTATGCGGCTCTTTTTGCACTAAGGAATGATAGCAGAGATGCTGCTGTTTCTGCTATAGTTGCAGCTCTAGGTGCCAAAAGTGCCCTTCTAAAGCATGAGGTTGCTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAACAGAAAGAGAACAATAGGCGGACACGTTCTAGAGCAAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCGAGAATGATTGTATAC] [+] EMBL AK069765 [TGAGAAGTCCATTCGGACTGCTGCGTGAGAACAACGCGCGTACGGGCGGCGCCGACTTCGACGTCGACGCGGACTCCCTCCTCCACGCTCGCCGGCGGCCGGAAGCTCCTCCGGGTGAAGGCGTCAGATTACCTTGCAGCCACCAACTAATTCATGGAGTCGGCAGAGGTGGCTGCTTCTTCCACATTCGGGCCTACCCCAGAGATGGAGAAGTTCCTGTGCGATCTGCTGCTTGACACGGCACAGCCCATCGCTGAACGCTTCCGTGCGCTCTTCTCCCTCCGCAACCTCCATGGTGATGGCCCCCGCTGCGCCCTCCTCCAAGCTGCAAGGGATTCTTCTAACTTGCTTGCCCATGAGGCTGCTTTTGCACTTGGACAAATGCAAGATGCTGAGGCTATCCCTGCGTTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGCCATGAGGCTGCGGAAGCCCTTGGTGCTATTGGCCTGGAGAAGAGCATTCCCCTGCTTGAGGAGAGTTTAGCTGCTGATCCTGCCGTGGAGGTTCAGGAAACATGTGAGCTGGCTCTTAGGCGGATAGAACAACAAAAGAATGCTGGTGTTTCTGAAAGCACAACCATTTCACCATTTCTCTCAGTTGATCCAGCATTACCTGCAAAGCAAGGACTTTCGGTACACCAACTAAGGGAGATTCTTCTCAACGAACAAGAAAGCATGTATGAACGTTATGCGGCTCTTTTTGCACTAAGGAATGATAGCAGAGATGCTGCTGTTTCTGCTATAGTTGCAGCTCTAGGTGCCAAAAGTGCCCTTCTAAAGCATGAGGTTGCTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATGGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGGTAGTCAATGATGTATCGACATAGCAACATTAAATATTGAA ] [-] EMBL CB673259 [ TGCTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAACAGAAAGAGAACAATAGGCGGACACGTTCTAGAGCAAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCGAGAATGATTGTATAC] [-] EMBL CF313785 [ CTTATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATTAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAAaaaa ] [+] EMBL CB673258 [ ATGTGTTAGGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAAAGCATTGCACTTCTGGAGGAATTCGCGAAGGATCCTGAGCCTATAGTCTCCCAAAGCTGTGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACACAGATAGTCAATGATGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAAACAGAAAGAGAACAATAGGCGGACACGTTCTAGAGCAAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCGAGAATGATTGTATA ] consensusID : consensus_12612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1320 fasta sequence [TTGGGACGCGGGATTCCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGGCTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGATGGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCGGGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGCTGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCAAGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCTGCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAGAGAATGTGTTTTCTTTGAGTACCAACTAGACTAGGTGCTTAATGATCCTATTAACGCATTGTTTTTTTTTAATCTTGCACATATATTTCGTTATTAAAATGAGTAGTCCAAGATAT] [+] EMBL CB657074 [TTGGGACGCGGGATTCCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGGCTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGATGGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCGGGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGCTGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCAAGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCTGCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTANGCGTCAAAAGTGCTCTTCTACGCCACGA ] [+] EMBL AK059924 [ GGGATTCCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGGCTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGATGGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCGGGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGCTGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCAAGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAATTGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCTGCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTC ] [-] EMBL CB657980 [ TGAGCTGGCTATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAGAGAATGTGTTT ] [-] EMBL CB657075 [ CTGTTTCACCTTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAGGGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACTAAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAGTGCTTTTTTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTCAGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTTTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTTTCCCAGAGCTGGGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCTGGAATGTGTTTAATCCTGTAATCCAAACCTTATACCAGTTTACCTTGAATTGATATGTTCGTCAAAAGGATTTACTGATCAATTTTTGGGCTTTCATTTTAGGAAGAAAAGAGAATGTGTTTTCTTTGAGTACCAACTAGACTAGGTGCTTAATGATCCTATTAACGCATTGTTTTTTTTTAATCTTGCACATATATTTCGTTATTAAAATGAGTAGTCCAAGATAT] [+] EMBL BE230455 [ AAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTGCAAAGGACCCTGAGCCAATAGTCTCCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAATATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCTGCAGACTCCTCAGGTGCAGCAGGAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGTGAGAGGCAGGCTGGAATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAACTGATATGTTCGTCAAAAGGATTTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAAAAAAa ] consensusID : consensus_12612#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [GTGGAGCCTTAGGGGCCAAAAGGCCCCTTTTAAAGCCTAAGGGGCGTTATGGGTTGGCCAGGTGCACAAAAAAGCCTGCTTGCGGGGAGCCTTCCCCCGTCCCCAAGGATGTGATGAGCATCCAATGGTCAGGCATGAAACTTGNTTAGGGCCTTGGTTCAATTGCAGATCAAGAAAGCCATGCACTTCTGGAGGAATTCGCCAAGGCTCCTGAGCCTATAGTCTTCCCAAAACTGTGAAGTCGCGCTCAGCATGCTGGAATCCGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTTTGCAGACTCCTGGGGGGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCCCTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTTTCCTGGTCTCCTGCGGCTTATGTCTTGGGCCCTGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAGACTTTACACAGATAGTCAATGATGTATCGACATAGCAACCTTAAATATTGAAGGGCTTCCTGAGCCAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762631 [GTGGAGCCTTAGGGGCCAAAAGGCCCCTTTTAAAGCCTAAGGGGCGTTATGGGTTGGCCAGGTGCACAAAAAAGCCTGCTTGCGGGGAGCCTTCCCCCGTCCCCAAGGATGTGATGAGCATCCAATGGTCAGGCATGAAACTTGNTTAGGGCCTTGGTTCAATTGCAGATCAAGAAAGCCATGCACTTCTGGAGGAATTCGCCAAGGCTCCTGAGCCTATAGTCTTCCCAAAACTGTGAAGTCGCGCTCAGCATGCTGGAATCCGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTTTGCAGACTCCTGGGGGGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCCCTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTTTCCTGGTCTCCTGCGGCTTATGTCTTGGGCCCTGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAGACTTTACACAGATAGTCAATGATGTATCGACATAGCAACCTTAAATATTGAAGGGCTTCCTGAGCCAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12612#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [CCGCTCCCGGAATNTCCCGGCTCNACCCACCCTCCGGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAACAGAAAGAGAACATAGGCGGACACGTTCTAGAGCAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCAAAA] [+] EMBL BM038548 [CCGCTCCCGGAATNTCCCGGCTCNACCCACCCTCCGGTATCGACATAGCAACATTAAATATTGAAGGACTTCATGAGCAACAGAAAGAGAACATAGGCGGACACGTTCTAGAGCAAGGTTGCTGATTACCTGTTAAGAGTGGATTGTTCCTATCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12612#0 TGAGAAGTCCATTCGGACTGCTGCGTGAGAACAACGCGCGTACGGGCGGCGCCGACTTCG 60 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 ------------------------------------------------------------ consensus_12612#0 ACGTCGACGCGGACTCCCTCCTCCACGCTCGCCGGCGGCCGGAAGCTCCTCCGGGTGAAG 120 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 ------------------------------------------------------------ consensus_12612#0 GCGTCAGATTACCTTGCAGCCACCAACTAATTCATGGAGTCGGCAGAGGTGGCTGCTTCT 180 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 ----------------------------------TTGGGACGCGGGATTCCCTCGCCGCC 26 consensus_12612#0 TCCACATTCGGGCCTACCCCAGAGATGGAGAAGTTCCTGTGCGATCTGCTGCTTGACACG 240 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 GCCGCCGCCGCCGCCGCCGCCGCCGCAGTGACCACCTCGCTCGCCGGCGGACTCGATTGG 86 consensus_12612#0 GCACAGCCCATCGCTGAACGCTTCCGTGCGCTCTTCTCCCTCCGCAACCTCCATGGTGAT 300 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 CTCACCGGCGGCGACGGAGGAGGAGGAGGCATCTGCGGCGTTCGGCGCGACCCCGGAGAT 146 consensus_12612#0 GGCCCCCGCTGCGCCCTCCTCCAAGCTGCAAGGGATTCTTCTAACTTGCTTGCCCATGAG 360 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 GGAGGGGTTCCTCTGCGACCGCCTGCTCGACGCGGCGCAGCCCATCGCCGAGCGCTTCCG 206 consensus_12612#0 GCTGCTTTTGCACTTGGACAAATGCAAGATGCTGAGGCTATCCCTGCGTTAGAGGCAGTT 420 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 GGCGCTCTTCTCCCTCCGCAACCTCCGCGGCGACGCCCCTCGCCGCGCCCTCCTCCAAGC 266 consensus_12612#0 CTCAAAGATCTTTCACTTCATCCAATTGTCCGCCATGAGGCTGCGGAAGCCCTTGGTGCT 480 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 TGCAAGGGACTCTTCAAACTTGCTTGCCCATGAGGCTGCATTTGCACTAGGACAAATGCA 326 consensus_12612#0 ATTGGCCTGGAGAAGAGCATTCCCCTGCTTGAGGAGAGTTTAGCTGCTGATCCTGCCGTG 540 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 AGATGCTGAGGCTATCCCTGCATTAGAGGCAGTTCTCAAAGATCTTTCACTTCATCCAAT 386 consensus_12612#0 GAGGTTCAGGAAACATGTGAGCTGGCTCTTAGGCGGATAGAACAACAAAAGAATGCTGGT 600 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 TGTCCGACACGAGGCTGCGGAAGCGCTTGGAGCTATTGGCCTGGAAAAGAGCATTTCCCT 446 consensus_12612#0 GTTTCTGAAAGCACAACCATTTCACCATTTCTCTCAGTTGATCCAGCATTACCTGCAAAG 660 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 GCTGGAGGAGAGTTTAGCTGTTGATCCTGCCGTGGAAGTTCAAGAAACATGTGAGCTGGC 506 consensus_12612#0 CAAGGACTTTCGGTACACCAACTAAGGGAGATTCTTCTCAACGAACAAGAAAGCATGTAT 720 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 TATTAGACGGATAGAAGAGCAAAAGAATACTAGTGGAGTTGAAAGTGCAACTGTTTCACC 566 consensus_12612#0 GAACGTTATGCGGCTCTTTTTGCACTAAGGAATGATAGCAGAGATGCTGCTGTTTCTGCT 780 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 TTTTCTCTCAGTTGATCCAGCACTGCCTGCAAAGCAAGGACTTCCAGTAGAACAACTAAG 626 consensus_12612#0 ATAGTTGCAGCTCTAGGTGCCAAAAGTGCCCTTCTAAAGCATGAGGTTGCTTATGTGTTA 840 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 ------------------------------------------------------------ consensus_12612#1 GGAGCTTCTTCTCAACGAGCAAGAAAGCATGTATGAACGTTATGCAGCTCTCTTTGCACT 686 consensus_12612#0 GGTCAGCTGCAAAATAAAGCTGCTTCGGATGCGCTTTCCACCGTCCTGAAGAATGTTGAT 900 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 --------------------------------------GTGGAGCCTTAGGGGCCAAAAG 22 consensus_12612#1 AAGGAATGACAGTGGAGATGCTGCTGTTTCTGCTATTGTTGCTGCTCTAGGCGTCAAAAG 746 consensus_12612#0 GAGCATCCAATGGTCAGGCATGAAGCTGCTGAGGCCCTTGGTTCAATTGCAGATCAAGAA 960 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 GCCCCTTTTAAAGCCTAAGGGGCGTTATGGGTTGGCCAGGTGCACAAAAAAGCCTGCTTG 82 consensus_12612#1 TGCTCTTCTACGCCACGAGGTTGCTTATGTGTTAGGCCAGCTACAAAACAAAGCTGCTTC 806 consensus_12612#0 AGCATTGCACTTCTGGAGGAATTCGCGAAG-GATCCTGAGCCTATAGTCTCCCAAAGCTG 1019 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 CGGGGAGCCTTCCCCCGTCCCCAAGGATGT-GATGAGCATCCAATGGTCAGGCATGAAAC 141 consensus_12612#1 AGATGCACTTTCCACTGTCCTGAAGAATGTTGATGAGCATCCAATGGTCAGGCATGAAGC 866 consensus_12612#0 TGAAGTCGCGCTCAGCATGCTCGAATACGAGAGATCCGGAAAATCCTTCGAGTTTTTGTT 1079 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 TTGNTTAGGGCCTTGGTTCAATTGCAGATCAAGAAAGCCATGCACTTCTGGAGGAATTCG 201 consensus_12612#1 T-GCTGAGGCCCTTGGTTCAATTGCAGATCAGGAAAGCATTGCACTTCTGGAGGAGTTTG 925 consensus_12612#0 TCTGCAGACTCCTGGGGTGCAGCAGGAGTCCTGAGTAAGATAGATATATCTACTCCAGGC 1139 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 CCAAGGCTCCTGAGCCTATAGTCTTCCCAAAACTGTGAAGTCGCGCTCAGCATGCTGGAA 261 consensus_12612#1 CAAAGGACCCTGAGCCAATAGTCT-CCCAGAGCTGCGAAGTAGCACTCAGCATGCTTGAA 984 consensus_12612#0 TTCTATATCGATCTACTGCCAAGCTGACCGACAAATTTTGTCATCAATTTTGTCAAGACG 1199 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 TCCGAGAGATCCGGAAAATCCTTCGAGTTTTTGTTTTTGCAGACTCCTGGGGGGCAGCAG 321 consensus_12612#1 TATGAGAGATCAGGGAAGGCCTTTGAGTTTTTGTTCCCGCAGACTCCTCAGGTGCAGCAG 1044 consensus_12612#0 CTTCACTCCTATCAATAGTTATACCATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTA 1259 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 GAGTCCTGAGTAAGATAGATATATCTACTCCAGGCTTCTATATCGATCTACTGCCAAGCT 381 consensus_12612#1 GAGTCCTAAGTGAGTTGTGAAAGTGTGAACTGAGAGCGAGAGGCAGGCT--------GGA 1096 consensus_12612#0 TTGTTTCTCCTGGTCTCCTGCTGCTTATGTCTTGGACCATGAGAGTCAAAACAGCTAGTA 1319 consensus_12612#3 ------------------------------------------------------------ consensus_12612#2 GACCGACAAATTTTGTCATCAATTTTGTCAAGACGCTTCCCTCCTATCAATAGTTATACC 441 consensus_12612#1 ATGTGTCTAATCCTGTAATCCAAACCTTATACCAGTCTACCTTGAATTGATATGTTCGTC 1156 consensus_12612#0 AGAATTTACCTGAGAATTTTCGGTTTCATGGTAACTAGAAATACCATGTAAAACTTTACA 1379 consensus_12612#3 --------------------------------------CCGCTCCCGGAATNTCCCGGCT 22 consensus_12612#2 ATAAGAGTGTTTGTTGCTTATGTTTTTCACCACTATTGTTTTTCCTGGTCTCCTGCGGCT 501 consensus_12612#1 AAAAGGAT--------TTACTGATCAATCTCTGGGCTCTCATTCTAGGAAGAAAAGAGAA 1208 * * consensus_12612#0 CAG--ATAGTCAATGATGTATCGACATAGCAACATTAAATAT---TGAAG------GACT 1428 consensus_12612#3 CNA--CCCACCCTCCG-GTATCGACATAGCAACATTAAATAT---TGAAG------GACT 70 consensus_12612#2 TATGTCTTGGGCCCTGAGAGTCAAAACAGCTAGTAAGAATTTACCTGAGAATTTTCGGTT 561 consensus_12612#1 TGT---GTTTTCTTTGAGTACCAA-----CTAGACTAGGTGC---TTAAT------GATC 1251 * * * * * * * * * consensus_12612#0 TCATGAGCAAACAGAAAGAGAACAATAGGC---GGACACGTTCTAGAGCAAAGGTTGCTG 1485 consensus_12612#3 TCATGAGCAA-CAGAAAGAGAACA-TAGGC---GGACACGTTCTAGAGCAA-GGTTGCTG 124 consensus_12612#2 TCATG-GTAACTAGAAATACCATGTAAGACTTTACACAGATAGTCAATGATGTATCGACA 620 consensus_12612#1 CTAT---TAA-CGCATTGTTTTTTTTTAATCTTGCACATATATTTCGTTATTAA--AATG 1305 ** ** * *** * * * consensus_12612#0 -ATTACCTGTTAAGAGTGGATTGTTCCT---ATCGAGAATGATTGTATAC----- 1531 consensus_12612#3 -ATTACCTGTTAAGAGTGGATTGTTCCT---ATCAAAA----------------- 158 consensus_12612#2 TAGCAACCTTAAATATTGAAGGGCTTCCTGAGCCAAAAAAAAAAAAAAAAAAAAA 675 consensus_12612#1 -AGTAGTCCAAGATAT--------------------------------------- 1320 * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||