cluster # 12613

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Oryza sativa
cluster # 12613 cluster # 12613 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12613#0 length = 2406 sequences # 4

consensus_12613#1 length = 810 sequences # 6
consensus_12613#2 length = 533 sequences # 1

consensusID : consensus_12613#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2406
fasta sequence

                              [ATCCTAGGGCCGCCTTAGTCTTTCTCCCCTCTCCCCTCTCCCCCTCCCGCCCGCCTCTCCTCCCCTCCCCCCCGCCCGGGCGCCGCCACCTCCCCCGCCCTGCGAGCCTCGCCGAAGCCCCCCGCCGCTTCCTTCCGTTCCCCCTCCAGCGATGGCGACCTCGGCGCTGCTCCGGGCTCTGAGGCGGCCCTCGTCGGAAGCCGCGCTGCGATTGGCAGCAAGTGTCAGGGTGCAAGGAGTTACTGGATATAGGCATTTGAATAATCGGAATCTAAGTGTCTTTAATGAGTTCTCAAAACAATTGAAGGGGGAGGCTAAGAGTAATCCTGAGTTCCAGAAATCCATGAAGGAATTCAGTGAGAAACTTAGTGGGGTAAAAGAAGATCTTAAAGTAAGGACTAAGCAAACAGCTGAGACAATTTACAAGAGCGTTGATGATGTTTTGACTGAAGCTGAGGCAACATCTAAAAAGGTTACTGCAAATGTGAAAGAAAAAATGTCTGCCGCTACAGAAGAGGTAAAGGAGAGTTTTAGACTAGGAAAAGAAGATACTTCAAGTTGTAAGGATGGCTCACCTGAAACTTCGAAACATGAGTACTCTGAGACATCGTCACATTCAGATGACAAGTCACAAGCTGGCACAAGTGGCTATACATTGTTTAATAAACTGAGGTCAACACTTTCATCTGCTTCACCTGTGCTGTCTGGTGCATTTGCAAAGTTGAGGGATACTAGAGTCTCAACTTATGCTAAGCAGGGATATGAAATTTTCAAAGATGAGCTAAGCTCTAGCTCTAGCAGAAAGAAGAGAAATCATGCCAGGCATGCTTCTGCTGGAACAGTTGAAAAGAGTACT-CGAACTGAGTTAGTTATTGTACCAACAAAGAAATCAGTACTGGGTGAAAAGTGGGAAGCATTTAAGAATAAGATGCGAGGTCATCCAGCCTATAAGAGAGTGAATGAATATACCAAACCAGTCGTCAACATAGGACAAGAGGTAG-C-TGAGGATGTACGAGAGCGGTGGGAGACAAGTGACAATCCAGTGGTTCAGAAAATTCAAGATTTGAATGAATCTATTTTTGAGGAAACCGCAACTGCAGTGTCTTTCAGGGAAATTCGGCAGAGAGACCCATCCTTTTCTTTGCCTGATTTTGCTGGTGATGTTCAAGAAATGATTAAACCTGTTCTTACTGCATATTCCAAGGGTGATGTGAAGACCTTAAAAAAGTATTGCACCAAGGAAGTGATTGAACGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATAGAAACCTCTTCTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTTGTGAAGTCAGCTGTTCTTCTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATTTTCTATCCAAGAGATTATTTAGAGGAGGAAAGCAGCCACCTGGTGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCTGTGGTTTCATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATTTTCTATCCAAGAGATTATTTAGAGGAGGAAAGCATCCACCTGGTGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCTGTGGTTTCAGTGTTGAGGTTGAAAATTATCTTAATGTTTTGGCTTTTGACAGTGGCATTTTGTTTGTTTGCCTTCATTAACATTCACTTCGTATTTCGTACAGTGTATTTTCCGTATCATCTCAAGTTTGGCTGACCACAACTGC]

[+] EMBL AK072253             [ATCCTAGGGCCGCCTTAGTCTTTCTCCCCTCTCCCCTCTCCCCCTCCCGCCCGCCTCTCCTCCCCTCCCCCCCGCCCGGGCGCCGCCACCTCCCCCGCCCTGCGAGCCTCGCCGAAGCCCCCCGCCGCTTCCTTCCGTTCCCCCTCCAGCGATGGCGACCTCGGCGCTGCTCCGGGCTCTGAGGCGGCCCTCGTCGGAAGCCGCGCTGCGATTGGCAGCAAGTGTCAGGGTGCAAGGAGTTACTGGATATAGGCATTTGAATAATCGGAATCTAAGTGTCTTTAATGAGTTCTCAAAACAATTGAAGGGGGAGGCTAAGAGTAATCCTGAGTTCCAGAAATCCATGAAGGAATTCAGTGAGAAACTTAGTGGGGTAAAAGAAGATCTTAAAGTAAGGACTAAGCAAACAGCTGAGACAATTTACAAGAGCGTTGATGATGTTTTGACTGAAGCTGAGGCAACATCTAAAAAGGTTACTGCAAATGTGAAAGAAAAAATGTCTGCCGCTACAGAAGAGGTAAAGGAGAGTTTTAGACTAGGAAAAGAAGATACTTCAAGTTGTAAGGATGGCTCACCTGAAACTTCGAAACATGAGTACTCTGAGACATCGTCACATTCAGATGACAAGTCACAAGCTGGCACAAGTGGCTATACATTGTTTAATAAACTGAGGTCAACACTTTCATCTGCTTCACCTGTGCTGTCTGGTGCATTTGCAAAGTTGAGGGATACTAGAGTCTCAACTTATGCTAAGCAGGGATATGAAATTTTCAAAGATGAGCTAAGCTCTAGCTCTAGCAGAAAGAAGAGAAATCATGCCAGGCATGCTTCTGCTGGAACAGTTGAAAAGAGTACT CGAACTGAGTTAGTTATTGTACCAACAAAGAAATCAGTACTGGGTGAAAAGTGGGAAGCATTTAAGAATAAGATGCGAGGTCATCCAGCCTATAAGAGAGTGAATGAATATACCAAACCAGTCGTCAATATAGGACAAGAGGTAG C TGAGGATGTACGAGAGCGGTGGGAGACAAGTGACAATCCAGTGGTTCAGAAAATTCAAGATTTGAATGAATCTATTTTTGAGGAAACCGCAACTGCAGTGTCTTTCAGGGAAATTCGGCAGAGAGACCCATCCTTTTCTTTGCCTGATTTTGCTGGTGATGTTCAAGAAATGATTAAACCTGTTCTTACTGCATATTCCAAGGGTGATGTGAAGACCTTAAAAAAGTATTGCACCAAGGAAGTGATTGAACGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATAGAAACCTCTTCTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTTGTGAAGTCAGCTGTTCTTCTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATTTTCTATCCAAGAGATTATTTAGAGGAGGAAAGCAGCCACCTGGTGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCTGTGGTTTCATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATTTTCTATCCAAGAGATTATTTAGAGGAGGAAAGCATCCACCTGGTGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCTGTGGTTTCAGTGTTGAGGTTGAAAATTATCTTAATGTTTTGGCTTTTGACAGTGGCATTTTGTTTGTTTGCCTTCATTAACATTCACTTCGTATTTCGTACAGTGTATTTTCCGTATCATCTCAAGTTTGGCTGACCACAACTGC]
[+] EMBL AK065714             [             CTTAGTCTTTCTCCCCTCTCCCCTCTCCCCCTCCCGCCCGCCTCTCCTCCCCTCCCCCCCGCCCGGGCGCCGCCACCTCCCCCGCCCTGCGAGCCTCGCCGAAGCCCCCCGCGGCTTCCTTCCGTTCCCCCTCCAGCGATGGCGACCTCGGCGCTGCTCCGGGCTCTGAGGCGGCCCTCGTCGGAAGCCGCGCTGCGATTGGCAGCAAGTGTCAGGGTGCAAGGAGTTACTGGATATAGGCATTTGAATAATCGGAATCTAAGTGTCTTTAATGAGTTCTCAAAACAATTGAAGGGGGAGGCTAAGAGTAATCCTGAGTTCCAGAAATCCATGAAGGAATTCAGTGAGAAACTTAGTGGGGTAAAAGAAGATCTTAAAGTAAGGACTAAGCAAACAGCTGAGACAATTTACAAGAGCGTTGATGATGTTTTGACTGAAGCTGAGGCAACATCTAAAAAGGTTACTGCAAATGTGAAAGAAAAAATGTCTGCCGCTACAGAAGAGGTAAAGGAGAGTTTTAGACTAGGAAAAGAAGATACTTCAAGTTGTAAGGATGGCTCACCTGAAACTTCGAAACATGAGTACTCTGAGACATCGTCACATTCAGATGACAAGTCACAAGCTGGCACAAGTGGCTATACATTGTTTAATAAACTGAGGTCAACACTTTCATCTGCTTCACCTGTGCTGTCTGGTGCATTTGCAAAGTTGAGGGATACTAGAGTCTCAACTTATGCTAAGCAGGGATATGAAATTTTCAAAGATGAGCTAAGCTCTAGCTCTAGCAGAAAGAAGAGAAATCATGCCAGGCATGCTTCTGCTGGAACAGTTGAAAAGAGTACT CGAACTGAGTTAGTTATTGTACCAACAAAGAAATCAGTACTGGGTGAAAAGTGGGAAGCATTTAAGAATAAGATGCGAGGTCATCCAGCCTATAAGAGAGTGAATGAATATACCAAACCAGTCGTCAACATAGGACAAGAAGTAG C TGAGGATGTACGAGAGCGGTGGGAGACAAGTGACAATCCAGTGGTTCAGAAAATTCAAGATTTGAATGAATCTATTTTTGAGGAAACCGCAACTGCAGTGTCTTTCAGGGAAATTCGGCAGAGAGACCCATCCTTTTCTTTGCCTGATTTTGCTGGTGATGTTCAAGAAATGATTAAACCTGTTCTTACTGCATATTCCAAGGGTGATGTGAAGACCTTAAAAAAGTATTGCACCAAGGAAGTGATTGAACGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATAGAAACCTCTTCTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATG TTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF310083             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTCTAGCAGAAAGAAGAGAAATCATGCCAGGCATGCTTCTGCTGGAACAGTTGAAAAGAGTACT CGAACTGAGTTAGTTATTGTACCAACAAAGAAATCAGTACTGGGTGAAAAGTGGGAAGCATTTAAGAATAAGATGCGAGGTCATCCAGCCTATAAGAGAGTGAATGAATATACCAAACCAGTCGTCAACATAGGACAAGAGGTAGNC TGAGGATGTACGAGAGCGGTGGGAGACAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF310042             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGCTTCTGCTGGAACAGTCGAAAAGAGTACTATGAACTGAATTAGTTATTGTACCAACAAAGAAATCATTACTGGGTGAAAAGTGGGAAGCATTTAAGAATAAGATGCGAGGTCATCCAGCCTATAAGAGAGTGAATGAATATACCAAACCAGTCGTCAACATAGGACAAGAGGTAG CTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_12613#0
ATCCTAGGGCCGCCTTAGTCTTTCTCCCCTCTCCCCTCTCCCCCTCCCGCCCGCCTCTCC
TCCCCTCCCCCCCGCCCGGGCGCCGCCACCTCCCCCGCCCTGCGAGCCTCGCCGAAGCCC
CCCGCCGCTTCCTTCCGTTCCCCCTCCAGCGATGGCGACCTCGGCGCTGCTCCGGGCTCT
GAGGCGGCCCTCGTCGGAAGCCGCGCTGCGATTGGCAGCAAGTGTCAGGGTGCAAGGAGT
TACTGGATATAGGCATTTGAATAATCGGAATCTAAGTGTCTTTAATGAGTTCTCAAAACA
ATTGAAGGGGGAGGCTAAGAGTAATCCTGAGTTCCAGAAATCCATGAAGGAATTCAGTGA
GAAACTTAGTGGGGTAAAAGAAGATCTTAAAGTAAGGACTAAGCAAACAGCTGAGACAAT
TTACAAGAGCGTTGATGATGTTTTGACTGAAGCTGAGGCAACATCTAAAAAGGTTACTGC
AAATGTGAAAGAAAAAATGTCTGCCGCTACAGAAGAGGTAAAGGAGAGTTTTAGACTAGG
AAAAGAAGATACTTCAAGTTGTAAGGATGGCTCACCTGAAACTTCGAAACATGAGTACTC
TGAGACATCGTCACATTCAGATGACAAGTCACAAGCTGGCACAAGTGGCTATACATTGTT
TAATAAACTGAGGTCAACACTTTCATCTGCTTCACCTGTGCTGTCTGGTGCATTTGCAAA
GTTGAGGGATACTAGAGTCTCAACTTATGCTAAGCAGGGATATGAAATTTTCAAAGATGA
GCTAAGCTCTAGCTCTAGCAGAAAGAAGAGAAATCATGCCAGGCATGCTTCTGCTGGAAC
AGTTGAAAAGAGTACTCGAACTGAGTTAGTTATTGTACCAACAAAGAAATCAGTACTGGG
TGAAAAGTGGGAAGCATTTAAGAATAAGATGCGAGGTCATCCAGCCTATAAGAGAGTGAA
TGAATATACCAAACCAGTCGTCAACATAGGACAAGAGGTAGCTGAGGATGTACGAGAGCG
GTGGGAGACAAGTGACAATCCAGTGGTTCAGAAAATTCAAGATTTGAATGAATCTATTTT
TGAGGAAACCGCAACTGCAGTGTCTTTCAGGGAAATTCGGCAGAGAGACCCATCCTTTTC
TTTGCCTGATTTTGCTGGTGATGTTCAAGAAATGATTAAACCTGTTCTTACTGCATATTC
CAAGGGTGATGTGAAGACCTTAAAAAAGTATTGCACCAAGGAAGTGATTGAACGCTGCAA
AGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATAT
TTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGG
GTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGG
GCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGA
GGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGG
TATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGA
TCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTT
ATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTC
ATATAATTTATACTGATGATAGAAACCTCTTCTCAATCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCT
AATGTCTACTATGTTTTTTTTTTTGTGAAGTCAGCTGTTCTTCTTGCATGTTGGCTGAAA
AAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACC
GGAGTCTTGGGAGCATTTTCTATCCAAGAGATTATTTAGAGGAGGAAAGCAGCCACCTGG
TGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCTG
TGGTTTCATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATTT
TCTATCCAAGAGATTATTTAGAGGAGGAAAGCATCCACCTGGTGCGAACATTATGACTAC
AAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCTGTGGTTTCAGTGTTGAGGT
TGAAAATTATCTTAATGTTTTGGCTTTTGACAGTGGCATTTTGTTTGTTTGCCTTCATTA
ACATTCACTTCGTATTTCGTACAGTGTATTTTCCGTATCATCTCAAGTTTGGCTGACCAC
AACTGC

consensusID : consensus_12613#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 810
fasta sequence

                              [AAAAAAGTATTGCACCAAGGAAGTGATTGACCGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACGAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACG-CCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACCCCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAA-CATGCA-TTCGCTA-TTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATA-GAAACCTCTTCTCAATCTCTCT--CT---C-TCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAAAAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGT-CTTGGGAGCAAAAAATATCCAGAGATTATTTAGAGGAGGAAAGCAGCCACCCTGGTGCGAACATTATGACTACCAAAAAAAAAA]

[-] EMBL CA762171             [AAAAAAGTATTGCACCAAGGAAGTGATTGACCGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACGAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACG CCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACCCCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAAGCATGCA TTCGCTA TTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATA GAAACCTCTTCTCAATCTCTCT  CT   C TCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAAAAAaaaaaaa                                                                                                                       ]
[+] EMBL BM420036             [                                                                                                                                         tTACGCCCCATCATTATTGTAGGGTTCC AACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAA CATGCA TTCGCTA TTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCCACAAATAGTTTCATATAATTTATACTGATGATA GAAACCTCTTCTCAATCTCTCT  CT   C TCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAAAAA                                                                                                                              ]
[+] EMBL BI812620             [                                                                                                                                                                                                                                                                                                                                                                                                         AATTGGA CAGTCATTGCC A CATGCACTTCCCTATTTTGGGATGGAAGA CCTAACACTTCGAACTTAT CTGCTGTACGATGTGATCCTCTCAGTTCAGTCCACACCATTTTCCACCAATAGTTTCATATAATTTATACTGATGATA GAAACCTCTTCTC ATCTCTCT  CT   C TCTCTCTCTCTCTCTCTCTGCCCCCC CTGATGTATCTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGT CTTGGGAGCATTTTCTATCCAGAGATTATTTAGAGGAGGAAAGCAGCCACCCTGGTGCGAACATTATGACTACCAAAAAAAAAA]
[+] EMBL BQ908518             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccgGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATA GAAACCTCTTCTCAATCTCTCTTCCTTTCCTTCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCCTTGGGAGCAAAAAA                                                                     ]
[+] EMBL BQ908437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gcgtccgGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATACGAAACCTCTTCTCAATCTCTCT  CT   C TCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGT CTTGGGAGCAAAAAA                                                                     ]
[+] EMBL BQ908556             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCAACAAATAGTTTCATATAATTTATACTGATGATA GAAACCTCTTCTCAATCTCTCT  CT   C TCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAAAAGATTGTATAAGTTTTGT AACACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGT CTTGGGA CAAA                                                                        ]




>consensus_12613#1
AAAAAAGTATTGCACCAAGGAAGTGATTGACCGCTGCAAAGGAGAGAGAGATGCTTATGC
ATCACAGGGCATATTTTTCGATCACGAAATTTTGCATATTTCAGATGCTGATGTAAGAGA
AACAAAAATGATGGGATCTACGCCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTA
CTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACCCCATCCAAACCGT
CTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATA
TTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAG
TAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAACATGCAT
TCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCC
TCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATAG
AAACCTCTTCTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTAT
CTAATGTCTACTATGTTTTTTTTTTGTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAA
AAAGATTGTATAAGTTTTGTAAAAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCAC
CGGAGTCTTGGGAGCAAAAAATATCCAGAGATTATTTAGAGGAGGAAAGCAGCCACCCTG
GTGCGAACATTATGACTACCAAAAAAAAAA

consensusID : consensus_12613#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [ATTGAACGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF310084             [ATTGAACGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGATCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTCATATAATTTATACTGATGATAAAAAAAAAAAAAAAAAAA]




>consensus_12613#2
ATTGAACGCTGCAAAGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCAC
AAAATTTTGCATATTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCC
ATCATTATTGTAGGGTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAA
GTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTG
ATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAG
ATCCAGCAAGTTGGTATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTT
CTTTCTCAATTGGATCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCT
AACACTTCGAACTTATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTT
CAACAAATAGTTTCATATAATTTATACTGATGATAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12613#0      ATCCTAGGGCCGCCTTAGTCTTTCTCCCCTCTCCCCTCTCCCCCTCCCGCCCGCCTCTCC 60
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TCCCCTCCCCCCCGCCCGGGCGCCGCCACCTCCCCCGCCCTGCGAGCCTCGCCGAAGCCC 120
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      CCCGCCGCTTCCTTCCGTTCCCCCTCCAGCGATGGCGACCTCGGCGCTGCTCCGGGCTCT 180
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GAGGCGGCCCTCGTCGGAAGCCGCGCTGCGATTGGCAGCAAGTGTCAGGGTGCAAGGAGT 240
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TACTGGATATAGGCATTTGAATAATCGGAATCTAAGTGTCTTTAATGAGTTCTCAAAACA 300
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      ATTGAAGGGGGAGGCTAAGAGTAATCCTGAGTTCCAGAAATCCATGAAGGAATTCAGTGA 360
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GAAACTTAGTGGGGTAAAAGAAGATCTTAAAGTAAGGACTAAGCAAACAGCTGAGACAAT 420
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TTACAAGAGCGTTGATGATGTTTTGACTGAAGCTGAGGCAACATCTAAAAAGGTTACTGC 480
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      AAATGTGAAAGAAAAAATGTCTGCCGCTACAGAAGAGGTAAAGGAGAGTTTTAGACTAGG 540
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      AAAAGAAGATACTTCAAGTTGTAAGGATGGCTCACCTGAAACTTCGAAACATGAGTACTC 600
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TGAGACATCGTCACATTCAGATGACAAGTCACAAGCTGGCACAAGTGGCTATACATTGTT 660
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TAATAAACTGAGGTCAACACTTTCATCTGCTTCACCTGTGCTGTCTGGTGCATTTGCAAA 720
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GTTGAGGGATACTAGAGTCTCAACTTATGCTAAGCAGGGATATGAAATTTTCAAAGATGA 780
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GCTAAGCTCTAGCTCTAGCAGAAAGAAGAGAAATCATGCCAGGCATGCTTCTGCTGGAAC 840
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      AGTTGAAAAGAGTACTCGAACTGAGTTAGTTATTGTACCAACAAAGAAATCAGTACTGGG 900
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TGAAAAGTGGGAAGCATTTAAGAATAAGATGCGAGGTCATCCAGCCTATAAGAGAGTGAA 960
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TGAATATACCAAACCAGTCGTCAACATAGGACAAGAGGTAGCTGAGGATGTACGAGAGCG 1020
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GTGGGAGACAAGTGACAATCCAGTGGTTCAGAAAATTCAAGATTTGAATGAATCTATTTT 1080
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TGAGGAAACCGCAACTGCAGTGTCTTTCAGGGAAATTCGGCAGAGAGACCCATCCTTTTC 1140
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TTTGCCTGATTTTGCTGGTGATGTTCAAGAAATGATTAAACCTGTTCTTACTGCATATTC 1200
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      CAAGGGTGATGTGAAGACCTTAAAAAAGTATTGCACCAAGGAAGTGATTGAACGCTGCAA 1260
consensus_12613#1      ---------------------AAAAAAGTATTGCACCAAGGAAGTGATTGACCGCTGCAA 39
consensus_12613#2      ----------------------------------------------ATTGAACGCTGCAA 14
                                                                     ***** ********

consensus_12613#0      AGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATAT 1320
consensus_12613#1      AGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACGAAATTTTGCATAT 99
consensus_12613#2      AGGAGAGAGAGATGCTTATGCATCACAGGGCATATTTTTCGATCACAAAATTTTGCATAT 74
                       ********************************************** *************

consensus_12613#0      TTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGG 1380
consensus_12613#1      TTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGG 159
consensus_12613#2      TTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGG 134
                       ************************************************************

consensus_12613#0      GTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGG 1440
consensus_12613#1      GTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGG 219
consensus_12613#2      GTTCCAAACACAGCAAATTTACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGG 194
                       ************************************************************

consensus_12613#0      GCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGA 1500
consensus_12613#1      GCAGGACCCCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGA 279
consensus_12613#2      GCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCATGCAACTGATGGATAGTGATGA 254
                       ******* ****************************************************

consensus_12613#0      GGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGG 1560
consensus_12613#1      GGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGG 339
consensus_12613#2      GGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGCGGTTGCGTGAGATCCAGCAAGTTGG 314
                       ************************************************************

consensus_12613#0      TATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGA 1620
consensus_12613#1      TATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGA 399
consensus_12613#2      TATCAAAGCTCTCATATAGAGTAGGTCTTCTCTTCTCTTGCTATTTCTTTCTCAATTGGA 374
                       ************************************************************

consensus_12613#0      TCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTT 1680
consensus_12613#1      TCAGTCATTGCCAA-CATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTT 458
consensus_12613#2      TCAGTCATTGCCAAACATGCATTCGCTATTTGGGATGGAAGAGCCTAACACTTCGAACTT 434
                       ************** *********************************************

consensus_12613#0      ATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTC 1740
consensus_12613#1      ATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTC 518
consensus_12613#2      ATGCTGCTGTACGATGTGATCCTCTCAGTTCAGTGCAAGCAATTTTCAACAAATAGTTTC 494
                       ************************************************************

consensus_12613#0      ATATAATTTATACTGATGATAGAAACCTCTTCTCAATCTCTCTCTCTCTCTCTCTCTCTC 1800
consensus_12613#1      ATATAATTTATACTGATGATAGAAACCTCTTCTCAATCTCTCTCTCTCTCTCTCTCTCTC 578
consensus_12613#2      ATATAATTTATACTGATGATAAAAAAAAAAAAAAAAAAA--------------------- 533
                       ********************* ***         **                        

consensus_12613#0      TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCCCCGCTGATGTATCT 1860
consensus_12613#1      TCTCT------------------------------------GCCCCCCGCTGATGTATCT 602
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      AATGTCTACTATGTTTTTTTTTTTGTGAAGTCAGCTGTTCTTCTTGCATGTTGGCTGAAA 1920
consensus_12613#1      AATGTCTACTATGTTTTTTTTTT-GTGAAGTCAGCTGTTCTTTTTGCATGTTGGCTGAAA 661
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      AAGATTGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACC 1980
consensus_12613#1      AAGATTGTATAAGTTTTGTAAAAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACC 721
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GGAGTCTTGGGAGCATTTTCTATCCAAGAGATTATTTAGAGGAGGAAAGCAGCCACC-TG 2039
consensus_12613#1      GGAGTCTTGGGAGCAAAAAATATCCA-GAGATTATTTAGAGGAGGAAAGCAGCCACCCTG 780
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GTGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCT 2099
consensus_12613#1      GTGCGAACATTATGACTACCAAAAAAAAAA------------------------------ 810
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      GTGGTTTCATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATT 2159
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TTCTATCCAAGAGATTATTTAGAGGAGGAAAGCATCCACCTGGTGCGAACATTATGACTA 2219
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      CAAGTTGGTAACAGAGTAACCTGATGGTTGAAAGCATGTTCTGTGGTTTCAGTGTTGAGG 2279
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      TTGAAAATTATCTTAATGTTTTGGCTTTTGACAGTGGCATTTTGTTTGTTTGCCTTCATT 2339
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      AACATTCACTTCGTATTTCGTACAGTGTATTTTCCGTATCATCTCAAGTTTGGCTGACCA 2399
consensus_12613#1      ------------------------------------------------------------
consensus_12613#2      ------------------------------------------------------------
                                                                                   

consensus_12613#0      CAACTGC 2406
consensus_12613#1      -------
consensus_12613#2      -------