These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 861 fasta sequence [CCTTGGCGTAAAAGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC-T---GAGATGGCGAGCACAGCATGC-TTTGTGATT-GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT-GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT-GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT-GGTGTCTGTTTATGTAACTGCT-GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAGTGGGAAATTTAAAACAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU081274 [CCTTGGCGTAAAAGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGA NAGGGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCATGGGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGTGGGTGTCTGTTTATGTAACTTCTGGGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCNAGGATGGGATAAAAAGTTTCTT CAGGNGGGTCACGGACTCTACATaa ] [+] EMBL AK071179 [ AGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC TGCAGAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAG ] [+] EMBL CF320530 [ ATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCANGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACT ] [+] EMBL CF297685 [ TCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCA GGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAA ] [+] EMBL C29067 [ TCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTAAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGGTTCTTCCAGGAGGTTCACGGACTCTACATCAAGATCTTCCTCAATCCACTCTACCT ] [+] EMBL C97832 [ GAAGGGATCCNT GAGATGGCG GCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATCCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATNTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAAaaa ] [+] EMBL AU082658 [ ACAGCATGCTTTTGGGATTGGTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTTGGGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCAaaaaa ] [-] EMBL CA759865 [ GTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCCCCAGTTCATATTGCACGCTGCCTTAGATGTTGTTCAGGACCCTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTTTTCCAGGAGGTTCACGAACTTTACATCAAGATTTTCCTCAATCCCCTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCCCCCCGCCCTGTATTTTAGTGAGTAGCCCTTGCCTTGTACTAGTTTTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGGTCCTCTAATGATCTTGTACTAAAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCCCCCATCGAAGTTTAGTGGGAAATTTATGTCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI809642 [ cTTTATGTAACT CT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGA CGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTAC ATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAGTGGGAAAAAAAAAA ] [-] EMBL CF320531 [ CTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTTTACATCAAGATTTTCCTCAATCCACTTTACCTACCTGGTTTTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTTTGTAAGCTCCACACCGCCCTGTATTTTAGTGAGTAGCACTTGCCTTGTACTAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAAAAAAGTGCTCTGTTTGTTTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTTTACCCAGAGATTATATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAATTTAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_12615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [CACTTTACCTACCTGGTTTTTGCATCACATCCTTTCATTTTGATAATAAGGTCAGGGGTTTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTTTGTAAGCTCCACACCGCCCCTGTATTTTAGTGAGTAGCACTTGCCTTGGAATAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTTTAATGATTTTGGACTAAAAAAGTGCTTTGTTTGTTTTTTCCGGAGTTAGTAAACGCCCATTCCTTGCCTGGACTGTACTTTTACCCAGAGATTATATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF297686 [CACTTTACCTACCTGGTTTTTGCATCACATCCTTTCATTTTGATAATAAGGTCAGGGGTTTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTTTGTAAGCTCCACACCGCCCCTGTATTTTAGTGAGTAGCACTTGCCTTGGAATAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTTTAATGATTTTGGACTAAAAAAGTGCTTTGTTTGTTTTTTCCGGAGTTAGTAAACGCCCATTCCTTGCCTGGACTGTACTTTTACCCAGAGATTATATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12615#0 CCTTGGCGTAAAAGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGA 60 consensus_12615#1 ------------------------------------------------------------ consensus_12615#0 ACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATC 120 consensus_12615#1 ------------------------------------------------------------ consensus_12615#0 CTGAGATGGCGAGCACAGCATGCTTTGTGATTGTGAGTAAAAATGATATTCCAATCTACG 180 consensus_12615#1 ------------------------------------------------------------ consensus_12615#0 AGGCTGAAGTTGGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATAT 240 consensus_12615#1 ------------------------------------------------------------ consensus_12615#0 TGCACGCTGCATTAGATGTTGTTCAGGACCTTGCATGGGCTACAAACACAATGTTTCTGA 300 consensus_12615#1 ------------------------------------------------------------ consensus_12615#0 AGTCAGTAGACAGATTTGATGATCTTGTGGTGTCTGTTTATGTAACTGCTGGTCATACTA 360 consensus_12615#1 ------------------------------------------------------------ consensus_12615#0 GATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGG 420 consensus_12615#1 ------------------------------------------------------------ consensus_12615#0 TTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCA 480 consensus_12615#1 ---------------------------------CACTTTACCTACCTGGTTTTTGCATCA 27 **** ************* * ****** consensus_12615#0 CATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAA 540 consensus_12615#1 CATCCTTTCATTTTGATAATAAGGTCAGGGGTTTTGCAAGGAAATACCTGTAGCATATAA 87 ****** *********** *********** * *************************** consensus_12615#0 CCAGGTGAAGACTCTGTAAGCTCCACACCGCCC-TGTATTCTAGTGAGTAGCACTTGCCT 599 consensus_12615#1 CCAGGTGAAGACTTTGTAAGCTCCACACCGCCCCTGTATTTTAGTGAGTAGCACTTGCCT 147 ************* ******************* ****** ******************* consensus_12615#0 TGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCAT 659 consensus_12615#1 TGGAATAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCAT 207 ** * ***** ** ********************************************** consensus_12615#0 TTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGT 719 consensus_12615#1 TTACTATTGAATGAACATAGATCCTTTAATGATTTTGGACTAAAAAAGTGCTTTGTTTGT 267 ************************* ******* *** **** ********* ******* consensus_12615#0 CTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTA 779 consensus_12615#1 TTTTTCCGGAGTTAGTAAACGCCCATTCCTTGCCTGGACTGTACTTTTACCCAGAGATTA 327 **************** ****************** ********* ************* consensus_12615#0 TATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAGTGGGAAATTTAAAACA 839 consensus_12615#1 TATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAA---AAAAAA 384 *********************** * ************************* **** * consensus_12615#0 AAAAAAAAAAAAAAAAAAAAAA 861 consensus_12615#1 AAAAAAAAAAAAAAAAA----- 401 ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||