|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 861 fasta sequence
[CCTTGGCGTAAAAGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC-T---GAGATGGCGAGCACAGCATGC-TTTGTGATT-GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT-GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT-GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT-GGTGTCTGTTTATGTAACTGCT-GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAGTGGGAAATTTAAAACAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU081274 [CCTTGGCGTAAAAGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGA NAGGGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCATGGGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGTGGGTGTCTGTTTATGTAACTTCTGGGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCNAGGATGGGATAAAAAGTTTCTT CAGGNGGGTCACGGACTCTACATaa ]
[+] EMBL AK071179 [ AGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC TGCAGAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAG ]
[+] EMBL CF320530 [ ATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCANGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACT ]
[+] EMBL CF297685 [ TCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCA GGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAA ]
[+] EMBL C29067 [ TCGCGGCTGAACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATCC T GAGATGGCGAGCACAGCATGC TTTGTGATT GTAAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGGTTCTTCCAGGAGGTTCACGGACTCTACATCAAGATCTTCCTCAATCCACTCTACCT ]
[+] EMBL C97832 [ GAAGGGATCCNT GAGATGGCG GCACAGCATGC TTTGTGATT GTGAGTAAAAATGATATCCCAATCTACGAGGCTGAAGTT GGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATNTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAAaaa ]
[+] EMBL AU082658 [ ACAGCATGCTTTTGGGATTGGTGAGTAAAAATGATATTCCAATCTACGAGGCTGAAGTTGGGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATATTGCACGCTGCATTAGATGTTGTTCAGGACCTTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCAaaaaa ]
[-] EMBL CA759865 [ GTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCCCCAGTTCATATTGCACGCTGCCTTAGATGTTGTTCAGGACCCTGCAT GGGCTACAAACACAATGTTTCTGAAGTCAGTAGACAGATTTGATGATCTTGT GGTGTCTGTTTATGTAACTGCT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTTTTCCAGGAGGTTCACGAACTTTACATCAAGATTTTCCTCAATCCCCTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCCCCCCGCCCTGTATTTTAGTGAGTAGCCCTTGCCTTGTACTAGTTTTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGGTCCTCTAATGATCTTGTACTAAAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCCCCCATCGAAGTTTAGTGGGAAATTTATGTCAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI809642 [ cTTTATGTAACT CT GGTCATACTAGATTTATGTTACTTCATGACTCAAGGA CGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTCTGTAAGCTCCACACCGCCCTGTATTCTAGTGAGTAGCACTTGCCTTGTACTAGTTCTTCTAC ATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGTCTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTATATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAGTGGGAAAAAAAAAA ]
[-] EMBL CF320531 [ CTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGGTTCACGAACTTTACATCAAGATTTTCCTCAATCCACTTTACCTACCTGGTTTTCGCATCACATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTTTGTAAGCTCCACACCGCCCTGTATTTTAGTGAGTAGCACTTGCCTTGTACTAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAAAAAAGTGCTCTGTTTGTTTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTTTACCCAGAGATTATATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAATTTAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_12615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[CACTTTACCTACCTGGTTTTTGCATCACATCCTTTCATTTTGATAATAAGGTCAGGGGTTTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTTTGTAAGCTCCACACCGCCCCTGTATTTTAGTGAGTAGCACTTGCCTTGGAATAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTTTAATGATTTTGGACTAAAAAAGTGCTTTGTTTGTTTTTTCCGGAGTTAGTAAACGCCCATTCCTTGCCTGGACTGTACTTTTACCCAGAGATTATATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF297686 [CACTTTACCTACCTGGTTTTTGCATCACATCCTTTCATTTTGATAATAAGGTCAGGGGTTTTGCAAGGAAATACCTGTAGCATATAACCAGGTGAAGACTTTGTAAGCTCCACACCGCCCCTGTATTTTAGTGAGTAGCACTTGCCTTGGAATAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCATTTACTATTGAATGAACATAGATCCTTTAATGATTTTGGACTAAAAAAGTGCTTTGTTTGTTTTTTCCGGAGTTAGTAAACGCCCATTCCTTGCCTGGACTGTACTTTTACCCAGAGATTATATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12615#0 CCTTGGCGTAAAAGAAAATCTGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCGGCTGA 60
consensus_12615#1 ------------------------------------------------------------
consensus_12615#0 ACAGGGGAGGGGCGCCGATTTCTCCATCTGGCGAGCAGAGCAGGGGGAGGGGAGGGGATC 120
consensus_12615#1 ------------------------------------------------------------
consensus_12615#0 CTGAGATGGCGAGCACAGCATGCTTTGTGATTGTGAGTAAAAATGATATTCCAATCTACG 180
consensus_12615#1 ------------------------------------------------------------
consensus_12615#0 AGGCTGAAGTTGGGTCTGCTCCCAAGAGAGAAGATCAAGCTTATCAGCACCAGTTCATAT 240
consensus_12615#1 ------------------------------------------------------------
consensus_12615#0 TGCACGCTGCATTAGATGTTGTTCAGGACCTTGCATGGGCTACAAACACAATGTTTCTGA 300
consensus_12615#1 ------------------------------------------------------------
consensus_12615#0 AGTCAGTAGACAGATTTGATGATCTTGTGGTGTCTGTTTATGTAACTGCTGGTCATACTA 360
consensus_12615#1 ------------------------------------------------------------
consensus_12615#0 GATTTATGTTACTTCATGACTCAAGGAGCGAGGATGGAATAAAAAGTTTCTTCCAGGAGG 420
consensus_12615#1 ------------------------------------------------------------
consensus_12615#0 TTCACGAACTCTACATCAAGATCTTCCTCAATCCACTCTACCTACCTGGTTCTCGCATCA 480
consensus_12615#1 ---------------------------------CACTTTACCTACCTGGTTTTTGCATCA 27
**** ************* * ******
consensus_12615#0 CATCCTCTCATTTTGATACTAAGGTCAGGGCTCTTGCAAGGAAATACCTGTAGCATATAA 540
consensus_12615#1 CATCCTTTCATTTTGATAATAAGGTCAGGGGTTTTGCAAGGAAATACCTGTAGCATATAA 87
****** *********** *********** * ***************************
consensus_12615#0 CCAGGTGAAGACTCTGTAAGCTCCACACCGCCC-TGTATTCTAGTGAGTAGCACTTGCCT 599
consensus_12615#1 CCAGGTGAAGACTTTGTAAGCTCCACACCGCCCCTGTATTTTAGTGAGTAGCACTTGCCT 147
************* ******************* ****** *******************
consensus_12615#0 TGTACTAGTTCTTCTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCAT 659
consensus_12615#1 TGGAATAGTTTTTTTACAATTGAATGAACGTAGATCCTGAGACTAGCCTAGCAGTACCAT 207
** * ***** ** **********************************************
consensus_12615#0 TTACTATTGAATGAACATAGATCCTCTAATGATCTTGTACTAGAAAAGTGCTCTGTTTGT 719
consensus_12615#1 TTACTATTGAATGAACATAGATCCTTTAATGATTTTGGACTAAAAAAGTGCTTTGTTTGT 267
************************* ******* *** **** ********* *******
consensus_12615#0 CTTTTCCGGAGTTAGTAGACGCCCATTCCTTGCCTGTACTGTACTTCTACCCAGAGATTA 779
consensus_12615#1 TTTTTCCGGAGTTAGTAAACGCCCATTCCTTGCCTGGACTGTACTTTTACCCAGAGATTA 327
**************** ****************** ********* *************
consensus_12615#0 TATGTACTAGTAGTATAAAATATCTCTCACCCATCGAAGTTTAGTGGGAAATTTAAAACA 839
consensus_12615#1 TATGTACTAGTAGTATAAAATATTTTTCACCCATCGAAGTTTAGTGGGAAA---AAAAAA 384
*********************** * ************************* **** *
consensus_12615#0 AAAAAAAAAAAAAAAAAAAAAA 861
consensus_12615#1 AAAAAAAAAAAAAAAAA----- 401
*****************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||