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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 965 fasta sequence
[CCACCCGCTGCATCCACACGGCCCACCGAGCC-CACCACCGCCGCCGCGGCCGCGAGGCCACCACACTCCGACGACGGCGAGAGAGAGAGAGAGAGAG--AGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAGCCATGGAGGCGGCGGTGCCCAGCCGTGTGGCGCTCTCCGCGAGCCGGCTCTCCAACCACCACCACCACGCGGTGGGAGGAGAAAGATATGCGATTTA-CA-GGGGAAGGTGCCCGAATCCTGCCATTCCTATGGCTCTGGCAGCAGCAGCTGCACCAGGGAAAGGTGGTGGCGTGCTTGATCGGCCAATAGAGAAAGTTACTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAAT-CCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATAGCCCCCATCAAATCTAGATAAACCGCAACGA-ATTAATTACAGTAAAAAAAAATTGCTGTCATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTTTATCACAGCTAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCTACTTCTAGCTAAAAAAAAAAAAAAAAAACAAATCATGCCGTTACGTGGCGTATCGTTGACAGCAAGGGCGAAATGTTTAAA]
[+] EMBL CF315286 [CCACCCGCTGCATCCACACGGGCCACCGAGCC CACCACCGCCGCCGCGGCCGCGAGGCCACCACACTCCGACGACGGCGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAGCCATGGAGGCGGCGGTGCCCANCCGTGTGGCGCTCTCCGCGAGCCGGCTCTCCAACCACCACCACCACGCGGTGGGAGGAGAAAGATATGCGATTTA CA GGGGAAGGTGCCCGAATCCTGCCATTCCTATGGCTCTGGCAGCAGCAGCTGC ]
[+] EMBL AK106170 [ CACCCGCTGCATCCACACGGCCCACCGAGCCACACCACCGCCGCCGCGGCCGCGAGGCCACCACACTCCGACGACGGC GAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAGCCATGGAGGCGGCGGTGCCCAGCCGTGTGGCGCTCTCCGCGAGCCGGCTCTCCAACCACCACCACCACGCGGTGGGAGGAGAAAGATATGCGATTTA CA GGGGAAGGTGCCCGAATCCTGCCATTCCTATGGCTCTGGCAGCAGCAGCTGCACCAGGGAAAGGTGGTGGCGTGCTTGATCGGCCAATAGAGAAAGTTACTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAAT CCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATAGCCCCCATCAAATCTAGATAAACCGCAACGA ATTAATTACAGTAAAAAAAAATTGCTGTCATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTTTATCACAGCTAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCTACTTCTAGCTAAttggttttt ]
[+] EMBL CF335962 [ CCGCTGCATCCACACGGCCCACCGAGCCACACCACCGCCGCCGCGGCCGCGAGGCCACCACACTCCGACGACGGCGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAGCCATGGAGGCGGCGGTGCCCAGCCGTGTGGCGCTCTCCGCGAGCCGGCTCTCCAACCACCACCACCACGCGGTGGGAGGAGAAAGATATGCGATTTANCA GGGGAAGGTGCCCGAATCCTGCCATTCCTATGGCTCTGGCAGCAGCAGCTGCACCAGGGAAAGGTGGTGGCGTGCTTGATCGGCCAATAGAGAAAGTTACTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAAT CCCGCAAAATGACGCCTCCGTACCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACGTCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTG ]
[+] EMBL CF334019 [ CTGCATCC CACGGCCC CCGAGCC CACCACCGCCGCCGCGGCCGCGAGGCCACCACACTCCGACGACGGCGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGGGAGAGGCAGCCATGGAGGCGGCGGTGCCCAGCCGTGTGGCGCTCTCCGCGAGCCGGCTCTCCAACCACCACCACCACGCGGTGGGAGGAGAAAGATATGCGATTTA CAGGGGGAAGGTGCCCGAATCCTGCCATTCCTATGGCTCTGGCAGCAGCAGCTGCACCAGGGAAAGGTGGTGGCGTGCTTGATCGGCCAATAGAGAAAGTTACTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAAT CCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCC ]
[-] EMBL CF334020 [ TGCACCAGGGAAAGGTGGTGGCGTGCTTGATCGGCCAATAGAGAAAGTTACTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAATCCCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATAGCCCCCATCAAATCTAGATAAACCGCAACGA ATTAATTACAGTAAAAAAAAATTGCTGTCATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTTTAaaaaa ]
[-] EMBL CF335963 [ TTAGAAAAT CCCGCAAAATGACGCCTCCGTACCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACGTCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATAGCCCCCATCAAATCTAGATAAACCGCAACGATATTAATTACAGTAAAAAAAAATTGCTGTCATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTTTATCACAGCTAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCTACTTCTAGCTAAAAAA ]
[-] EMBL CF293634 [ ACAACAGGCGTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATAGCCCCCATCAAATCTAGATAAACCGCAACGA ATTAATTACAGTAAAAAAAAATTGCTGTCATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTTTATCACAGCTAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCTACTTCTAGCTAAAAAA ]
[-] EMBL CF315285 [ AGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAATGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATACCCCCCATCAAATCTAGATAAACCGCAACGA ATTAATTACAGTAAAAAAAAATTGCTGTCATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTTTATCACAGCTAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCTACTTCTAGCTAAAAAAAAAAA ]
[-] EMBL CF294497 [ TCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATAGCCCCCGTCAAATCTAGATAAACCGCAACGA ATTAATTACAGTAAAAAAAAATTGC ATCATGCATCAGGATGAACAAGATATACCGCTTTTGAAGATGTAAAAAATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACAATAGTCACATACTTGTACATTTGGAGCTTTATCACAGCTAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCTACTTCTAGATAAAAAAAAAAAAAAAAAACAAATCATGCCGTTACGTGGCGTATCGTTGACAGCAAGGGCGAAATGTTTAAA]
[+] EMBL BF430770 [ ACCTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGATAGCCCCCATCAAATCTAGATAAACCGCAACGA ATTAATTACAGTAAAAAAAAATTGCTGTCATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTAGACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTGTATCACAGCCAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCT ]
consensusID : consensus_12622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[CTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAATCCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTATGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGANGCTCATGTTAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCNGAGGCAGANGANCACTGCACGTCGCTCAAGGGCAATGGCCTCCGGANCTCNATTGAACCTGCGANTGGTGGCTGCTGAAAAAAAAGCTCTGCTGTTTCNATGCTTATAGCTTGTNNATAGCCCCCNTCNAATCTAGATTAACCGCAACNAATTAATTACAGTNAAAAAAAATTGCTGTCATGCNTCANGATGAACACNGTATACCGCTTTTGAANATNTAATCATGTTAGTCACTTAAACTAAACNTNNCATTTTTCAGTATGAAACATTGGTCACATACTTGTTCATTTGGAGCTGTTTCACAGCCCGCATCTTGCAATTGTTTGAAGGTANTAACTGCTA]
[+] EMBL BE228784 [CTCCTGGTCGCCAGTCTGAATTCGATGTTAGAAAATCCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGCGTGAGTATGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCGTCAACATCATGCAGGANGCTCATGTTAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGTCNGAGGCAGANGANCACTGCACGTCGCTCAAGGGCAATGGCCTCCGGANCTCNATTGAACCTGCGANTGGTGGCTGCTGAAAAAAAAGCTCTGCTGTTTCNATGCTTATAGCTTGTNNATAGCCCCCNTCNAATCTAGATTAACCGCAACNAATTAATTACAGTNAAAAAAAATTGCTGTCATGCNTCANGATGAACACNGTATACCGCTTTTGAANATNTAATCATGTTAGTCACTTAAACTAAACNTNNCATTTTTCAGTATGAAACATTGGTCACATACTTGTTCATTTGGAGCTGTTTCACAGCCCGCATCTTGCAATTGTTTGAAGGTANTAACTGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12622#0 CCACCCGCTGCATCCACACGGCCCACCGAGCCCACCACCGCCGCCGCGGCCGCGAGGCCA 60
consensus_12622#1 ------------------------------------------------------------
consensus_12622#0 CCACACTCCGACGACGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG 120
consensus_12622#1 ------------------------------------------------------------
consensus_12622#0 GAGAGGCAGCCATGGAGGCGGCGGTGCCCAGCCGTGTGGCGCTCTCCGCGAGCCGGCTCT 180
consensus_12622#1 ------------------------------------------------------------
consensus_12622#0 CCAACCACCACCACCACGCGGTGGGAGGAGAAAGATATGCGATTTACAGGGGAAGGTGCC 240
consensus_12622#1 ------------------------------------------------------------
consensus_12622#0 CGAATCCTGCCATTCCTATGGCTCTGGCAGCAGCAGCTGCACCAGGGAAAGGTGGTGGCG 300
consensus_12622#1 ------------------------------------------------------------
consensus_12622#0 TGCTTGATCGGCCAATAGAGAAAGTTACTCCTGGTCGCCAGTCTGAATTCGATGTTAGAA 360
consensus_12622#1 ---------------------------CTCCTGGTCGCCAGTCTGAATTCGATGTTAGAA 33
*********************************
consensus_12622#0 AATCCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGC 420
consensus_12622#1 AATCCCGCAAAATGACGCCTCCGTATCGAGTCCTCCTCCACAACGACAACTACAACAGGC 93
************************************************************
consensus_12622#0 GTGAGTACGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCG 480
consensus_12622#1 GTGAGTATGTCGTCCAAGTCCTGATGAAAGTTATCCCCGGGATGACCGTCGACAATGCCG 153
******* ****************************************************
consensus_12622#0 TCAACATCATGCAGGAGGCTCATGTAAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGT 540
consensus_12622#1 TCAACATCATGCAGGANGCTCATGTTAACGGGCTGTCAGTGGTGATCATCTGCTCTCAGT 213
**************** ******** **********************************
consensus_12622#0 CGGAGGCAGAGGAGCACTGCACGTCGCTCAGGGGCAATGGCCTCCGGAGCTCGATTGAAC 600
consensus_12622#1 CNGAGGCAGANGANCACTGCACGTCGCTCAAGGGCAATGGCCTCCGGANCTCNATTGAAC 273
* ******** ** **************** ***************** *** *******
consensus_12622#0 CTGCGAGTGGTGGCTGCTGAAGAAGAGGCTCTGCTGTTTCGATGCTTATAGCTTGTAGAT 660
consensus_12622#1 CTGCGANTGGTGGCTGCTGAAAAAAAAGCTCTGCTGTTTCNATGCTTATAGCTTGTNNAT 333
****** ************** ** * ************* *************** **
consensus_12622#0 AGCCCCCATCAAATCTAGATAAACCGCAACGAATTAATTACAGTAAAAAAAAATTGCTGT 720
consensus_12622#1 AGCCCCCNTCNAATCTAGATTAACCGCAACNAATTAATTACAGTNAAAAAAAATTGCTGT 393
******* ** ********* ********* ************* ***************
consensus_12622#0 CATGCATCAGGATGAACACGGTATACCGCTTTTGAAGATGTAAATCATGTAAGTCACGTA 780
consensus_12622#1 CATGCNTCANGATGAACACNGTATACCGCTTTTGAANATNTAA-TCATGTTAGTCACTTA 452
***** *** ********* **************** ** *** ****** ****** **
consensus_12622#0 GACTAAACGTAGCATTTTTCAGTATGAAACATTGGTCACATACTTGTACATTTGGAGCTT 840
consensus_12622#1 AACTAAACNTNNCATTTTTCAGTATGAAACATTGGTCACATACTTGTTCATTTGGAGCTG 512
******* * *********************************** ***********
consensus_12622#0 TATCACAGCTAGCATCTTGCAATTGTTTGAGGTAGTAAACTGCTACTTCTAGCTAAAAAA 900
consensus_12622#1 TTTCACAGCCCGCATCTTGCAATTGTTTGAAGGTANTAACTGCTA--------------- 557
* ******* ******************* * ********
consensus_12622#0 AAAAAAAAAAAACAAATCATGCCGTTACGTGGCGTATCGTTGACAGCAAGGGCGAAATGT 960
consensus_12622#1 ------------------------------------------------------------
consensus_12622#0 TTAAA 965
consensus_12622#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||