cluster # 12627

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Oryza sativa
cluster # 12627 cluster # 12627 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12627#0 length = 1569 sequences # 8
consensus_12627#1 length = 741 sequences # 1

consensus_12627#2 length = 691 sequences # 1
consensus_12627#3 length = 551 sequences # 1

consensusID : consensus_12627#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1569
fasta sequence

                              [TCCCAGTGCCCACCACTCATCACCTCCCCCCTCTCATCCTCTCCTCCTCCTCCAATGGCCTTCTCCTCCACCGCCGCCGCCGCCTCCACCGCCTTCGTCTCTGGGCACCGCCGACGCGGCGGCGCGTGCCACCTGCTGTCCTCCTCTTTCCTCATCGCGTTCCCGCGCGCCGTCGCGGCGAGGAGGTGCGGCGAGGCGGCCGCGGCGCCGAGGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGC-GGC-GGC-GGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTG-GGGCGACCCGGCGGACGTCG-GCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGC-AAGGACCTCGACG-CCGTCAAGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGCGCAATTCCTCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGC-GACGAGCCGCCGCACGTCGAGGGGGACGCGGTGAA-GGAGA-GCGCGGGGCATGTGGGCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGG-CCGCAGTACATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGGATTGT-GAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGG-ATGCA-GGTGACGAACATATCGCACGTGCGCGACCTGGCGAGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGT-CGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCACTTCTACGCGGAGCCGA-GGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCTCGACGAACCTGCCGGAGGACCTCAAGGAG-AGGTTCGCGGAGTACGCCAGCAGCGGCAGAGGGCAGAAGGAGATGAGCTTCGACCTCGACGACAAGATCATCGCCGCCGCCTAACAACA-CCCATCTCATCTCACCTCGTCATGGTCAAATACAAATACAAAGTGCTCGGGGATCTCTTCTTCTCGTGATTTATTTTCTTCTCCCTCTGTTTCTTTGGTTCCTCTTCTCATACCGGAAGCATAGAGAAATGCAAAACTGAACAATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGTGAATAAGATGAGTTTTCGCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAGAATGGAACTTTGCAGAGTCAATCAGATTCAGCACATTTTTTTGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA]

[+] EMBL AK071575             [TCCCAGTGCCCACCACTCATCACCTCCCCCCTCTCATCCTCTCCTCCTCCTCCAATGGCCTTCTCCTCCACCGCCGCCGCCGCCTCCACCGCCTTCGTCTCTGGGCACCGCCGACGCGGCGGCGCGTGCCACCTGCTGTCCTCCTCTTTCCTCATCGCGTTCCCGCGCGCCGTCGCGGCGAGGAGGTGCGGCGAGGCGGCCGCGGCGCCGAGGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGC GGC GGC GGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTG GGGCGACCCGGCGGACGTCG GCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGC AAGGACCTCGACG CCGTCAAGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGCGCAATTCCTCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGC GACGAGCCGCCGCACGTCGAGGGGAACGCGGTGAA GGAGA GCGCGGGGCATGTGGGCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGG CCGCAGTACATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGGATTGT GAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGG ATGCA GGTGACGAACATATCGCACGTGCGCGACCTGGCGGGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGT CGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCACTTCTACGCGGAGCCGA GGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCTCGACGAACCTGCCGGAGGACCTCAAGGAG AGGTTCGCGGAGTACGCCAGCAGCGGCAGAGGGCAGAAGGAGATGAGCTTCGACCTCGACGACAAGATCATCGCCGCCGCCTAACAACA CCCATCTCATCTCACCTCGTCATGGTCAAATACAAATACAAAGTGCTCGGGGATCTCTTCTTCTCGTGATTTATTTTCTTCTCCCTCTGTTTCTTTGGTTCCTCTTCTCATACCGGAAGCATAGAGAAATGCAAAACTGAACAATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGTGAATAAGATGAGTTTTCGCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAGAATGGAACTTTGCAGAGTCAAT                                                                  ]
[+] EMBL AK104057             [ CCCAGTGCCCACCACTCATCACCTCCCCCCTCTCATCCTCTCCTCCTCCTCCAATGGCCTTCTCCTCCACCGCCGCCGCCGCCTCCACCGCCTTCGTCTCTGGGCACCGCCGACGCGGCGGCGCGTGCCACCTGCTGTCCTCCTCTTTCCTCATCGCGTTCCCGCGCGCCGTCGCGGCGAGGAGGTGCGGCGAGGCGGCCGCGGCGCCGAGGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGC GGC GGC GGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTG GGGCGACCCGGCGGACGTCG GCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGC AAGGACCTCGACG CCGTCAAGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGCGCAATTCCTCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGC GACGAGCCGCCGCACGTCGAGGGGGACGCGGTGAA GGAGA GCGCGGGGCATGTGGGCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGG CCGCAGTACATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGGATTGT GAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGG ATGCA GGTGACGAACATATCGCACGTGCGCGACCTGGCGAGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGT CGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCACTTCTACGCGGAGCCGA GGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCTCGACGAACCTGCCGGAGGACCTCAAGGAG AGGTTCGCGGAGTACGCCAGCAGCGGCAGAGGGCAGGAGGAGATGAGCTTCGACCTCGACGACAAGATCATCGCCGCCGCCTAACAACA CCCATCTCATCTCACCTCGTCATGGTCAAATACAAATACAAAGTGCTCGGGGATCTCTTCTTCTCGTGATTTATTTTCTTCTCCCTCTGTTTCTTTGGTTCCTCTTCTCATACCGGAAGCATAGAGAAATGCAAAACTGAACAATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGTGAATAAGATGAGTTTTCGCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAGAATGGAACTTTGC                                                                           ]
[+] EMBL CA754165             [                                               TCCTCCAATGGCCTTCTCCTCCACCGCCGCCGCCGCCTCCACCGCCTTCGTCTCTGGGCACCGCCGACGCGGCGGCGCGTGCCACCTGCTGTCCTCCTCTTTCCTCATCGCGTTCCCGCGCGCCGTCGCGGCGAGGAGGTGCGGCGAGGCGGCCGCGGCGCCGAGGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGC GGC GGC GGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACCACGGTGTG GGGCGACCCGGCGGACGTCG GCGCGCCGGTCGGCGGCGGCGTCTCGTTCGACGTCGTCCTCGACAACAACGGG AAGGACCTCGACGCCCGTCAAGCCGGTGCTGGACTGGGCCAAGGCGGCCGGTGTGGGGCAATTCCTCTTCTTCAGCAGCGCCGGCATCTACACGCCCAGCGGACGAGCCGCCGTACGTCGAGGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BI808549             [                                                                                                                                                                                                                  AGGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGCTGGCTGGCTGGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACAAGATGAAGAAGCCG CCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTGTGGGCGACCCGG GGACGTCGTGCGCGG GGTCGGCGG GG GCCTCGTTCGACGTCGTCCTCGACAACAACGGCGAAGGACCTCGACG CCGTCAAGCCGGTGGTGGACTGGGCGAAGGCGG CGGCGTGGCGCAATTCCTCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGC GACGAGCCGCCGCACGTCGAGGGGGACGCGGTGAACGGAGACGCGCGGGGCATGTGGGCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGGCCCGCAGTACATGATCGGCTCCGGAAACAACAA GACTGCGAGGAGTGGTTC TCGACAGGATTGTCGAGGGGCAGGCCGGTGCCGATCCCGGG  CGGGGCATGCACGGTGACGCACAT TCGCA GT CGCGA CT GCGA C T GT GCGC CGCCG GGAAAAGCCCGGCGC GCGGC GGGAGGA C TCACCAGGG  TCCGACgggc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSS14442A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GATTGT GAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGG ATGCA GGTGACGAACATATCGCACGTGCGCGACCTGGCGAGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGNCGNCGCCGG GCCCAGCCGNAGATCCTCCACTACGACCCCGNCGNCGTC GCGTCCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCACTTCTACGCGGAG CGAGGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGTTCGACGAACCTGCCGGAGGACCTCAAGGAGAAGGTTCGCGGAGTACGCCA                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU096613             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGATCCTCCACTACGACCCCG CNCCGTCGGCGT CGACNCCAAGAAGGCCTTCCCCTTCCGCAACATGCACTTCTACGCGGAGCCGA GGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCTCGACGAACCTGCCGGAGGACCTCAAGGAG AGGTTCGCGGAGTACGCCAGCAGCGGCAGAGGGCAGAAGGAGATGAGCTTCGACCTCGACGACAAGATCATCGCCGCCGCCTAACAACA CCCATCTCATCTCACCTCGTCATGGTCAAATACAAATACAAAGTGCTCGGGGATCTCTTCTTCTCGTGATTTATTTTCTTCTCCCTCTGTTTCTTTGGTTCCTCTTCTCATACCGGAAGCATAGAGAAATGCAAAACTGAACAATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGTGAATAAGATGAGTTTTCGCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAGAATGGAACTTTGCAGAGTCAATCAGATTCAaaaaa                                                     ]
[-] EMBL CF325071             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAAGATCATCGCCGCCGCCTAACAACACCCCAT TCATCTCACCTCGTCATGGTCAAATACAAATACAAAGTGCTCGGGGATCTCTTCTTCTCGTGATTTATTTTCTTCTCCCTCTGTTTCTTTGGTTCCTCTTCTCAAACCGGAAGCATAGAGAAATGCAAAACTGAACAATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGTGAATAAGATGAGTTTTCGCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAGAATGGAACTTTGCAGAGTCAATCAGATTCAGCACATTTTTTTGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA]
[-] EMBL CF325046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CA CCCATTTCATTTCACCTCGTCATGGTCAAATACAAATACAAAGTGCTCGGGGATTTTTTCTTTTCGTGATTTATTTTTTTCTCCCTCTGTTTCTTTGGTTCCTCTTTTCATACCGGAAGCATAGAGAAATGCAAAACTGAACAATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGTGAATAAGATGAGTTTTCGCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAAAAAAAAACTTTGCAGAGTCAATCAGATTCAGCACATTTTTTTGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA]




>consensus_12627#0
TCCCAGTGCCCACCACTCATCACCTCCCCCCTCTCATCCTCTCCTCCTCCTCCAATGGCC
TTCTCCTCCACCGCCGCCGCCGCCTCCACCGCCTTCGTCTCTGGGCACCGCCGACGCGGC
GGCGCGTGCCACCTGCTGTCCTCCTCTTTCCTCATCGCGTTCCCGCGCGCCGTCGCGGCG
AGGAGGTGCGGCGAGGCGGCCGCGGCGCCGAGGAGGGTGGGCGCGGTGACCGTGCGCGCG
CAGGCGGCGGCGGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGG
CACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACC
GTGCTCACCGTCGGCGACGAGGGCTCCGACAAGATGAAGAAGCCGCCCTTCTCCCGCTTC
TCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTGGGGCGACCCGGCGGACGTCGGCGCG
GCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGAC
GCCGTCAAGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGCGCAATTCCTCTTCGTC
AGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCGCACGTCGAGGGGGACGCGGTG
AAGGAGAGCGCGGGGCATGTGGGCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTGG
GCGTCGTTCCGGCCGCAGTACATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGG
TTCTTCGACAGGATTGTGAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGGATGCAGGTG
ACGAACATATCGCACGTGCGCGACCTGGCGAGCATGGTGGCGCTCGCCGTGGAGAGCCCC
GGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCGCCGTCACCTTCAACGGC
CTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCC
GCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCACTTCTACGCG
GAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCTCGACGAACCTGCCGGAGGAC
CTCAAGGAGAGGTTCGCGGAGTACGCCAGCAGCGGCAGAGGGCAGAAGGAGATGAGCTTC
GACCTCGACGACAAGATCATCGCCGCCGCCTAACAACACCCATCTCATCTCACCTCGTCA
TGGTCAAATACAAATACAAAGTGCTCGGGGATCTCTTCTTCTCGTGATTTATTTTCTTCT
CCCTCTGTTTCTTTGGTTCCTCTTCTCATACCGGAAGCATAGAGAAATGCAAAACTGAAC
AATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGTGAATAAGATGAGTTTTC
GCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAGAATGGAACTTTGCAGAGTC
AATCAGATTCAGCACATTTTTTTGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AACTCGAGA

consensusID : consensus_12627#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 741
fasta sequence

                              [GATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAAATCACCCAAATCCCCCCAACCAAATTCTCCCAAATTTCAAACCGCCCCAAACAACATTCTTCAATTTGAAGACAAAATTGTCAATTTTTTTACTGTAGTCTTTTTTAAAACTATCGAATTAAGACAAAACTGTCGATTCTTTTTTCTTTAACTTTTGAACTATTTCGAAATATGAATAAAAAATTGGCAATTTTTTATGTAAATTATGAATTGTTTGAATTTGAAAACAAAACTTTCAAATTTTTAACTGTAAGTTCTGACAAATCCAAATTATGAGGACAAAACCATCAATTTTTTTTTTGCTGTAAACTTTGAATAAATCCGATTTGTCAAATTGTCGGTGTAAATTTCCAAGAAATATTCGAATTGAAGTCAAGTTATTTTTTTGGTTTCAAATTGTTTTTGCAGGGATTGTGAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGGATGCAGGTGACGAACATATCGCACGTGCGCGACCTGGCGAGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCAC]

[+] EMBL CB658659             [GATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAAATCACCCAAATCCCCCCAACCAAATTCTCCCAAATTTCAAACCGCCCCAAACAACATTCTTCAATTTGAAGACAAAATTGTCAATTTTTTTACTGTAGTCTTTTTTAAAACTATCGAATTAAGACAAAACTGTCGATTCTTTTTTCTTTAACTTTTGAACTATTTCGAAATATGAATAAAAAATTGGCAATTTTTTATGTAAATTATGAATTGTTTGAATTTGAAAACAAAACTTTCAAATTTTTAACTGTAAGTTCTGACAAATCCAAATTATGAGGACAAAACCATCAATTTTTTTTTTGCTGTAAACTTTGAATAAATCCGATTTGTCAAATTGTCGGTGTAAATTTCCAAGAAATATTCGAATTGAAGTCAAGTTATTTTTTTGGTTTCAAATTGTTTTTGCAGGGATTGTGAGGGGGAGGCCGGTGCCGATCCCGGGGTCGGGGATGCAGGTGACGAACATATCGCACGTGCGCGACCTGGCGAGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCAACATGCAC]




>consensus_12627#1
GATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAAATCACCCA
AATCCCCCCAACCAAATTCTCCCAAATTTCAAACCGCCCCAAACAACATTCTTCAATTTG
AAGACAAAATTGTCAATTTTTTTACTGTAGTCTTTTTTAAAACTATCGAATTAAGACAAA
ACTGTCGATTCTTTTTTCTTTAACTTTTGAACTATTTCGAAATATGAATAAAAAATTGGC
AATTTTTTATGTAAATTATGAATTGTTTGAATTTGAAAACAAAACTTTCAAATTTTTAAC
TGTAAGTTCTGACAAATCCAAATTATGAGGACAAAACCATCAATTTTTTTTTTGCTGTAA
ACTTTGAATAAATCCGATTTGTCAAATTGTCGGTGTAAATTTCCAAGAAATATTCGAATT
GAAGTCAAGTTATTTTTTTGGTTTCAAATTGTTTTTGCAGGGATTGTGAGGGGGAGGCCG
GTGCCGATCCCGGGGTCGGGGATGCAGGTGACGAACATATCGCACGTGCGCGACCTGGCG
AGCATGGTGGCGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGC
GTCTCCGACCGCGCCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGC
GCCCAGCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCC
TTCCCCTTCCGCAACATGCAC

consensusID : consensus_12627#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [GCCATCGCCCCTGCCCTCGATTATTCCCCCCTTCTCTCGCCTCGCTCCGAGCAGGCGTATGCGTCCTGACCAAGGTGTTCGACGTGTTGCCGCAGGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGGGCAATTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCGCACATCGAGGGGGACGCGGTGAAGGAGAACGCCGGGCATGTCAGCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGGCCGCAGTACATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAAATCACCCAAATCCCGCCAACCAAATTCTCCCAAATTCCATACCCTCACACCAAAATATTTTCAAATTCAATACAAACTGGAAGAGTTTTTAAACGAGATTTTGGTCGCGAGTTGCGGTGCTTGCATGTGCATGTAGATTTGACATTGTCTAGGCTCATTTGTTAAGCCCCAATTGACTTAGTTGATTGAGCTTTTTTTTCTCTCTTTTTTATGATGGTGTGCTCTTCTTGATGGCCTTTTTAATGTACTGGTACTGTAATCGGGCAGTAAGCCATGTTGTCTTCCTGTGCTCTTTTGAGAGAACAAAATGGGCATAAAGCCCATATATGTCATAACAAAACTAGGCTTGCTGTTT]

[+] EMBL AK062767             [GCCATCGCCCCTGCCCTCGATTATTCCCCCCTTCTCTCGCCTCGCTCCGAGCAGGCGTATGCGTCCTGACCAAGGTGTTCGACGTGTTGCCGCAGGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGGGCAATTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCGCACATCGAGGGGGACGCGGTGAAGGAGAACGCCGGGCATGTCAGCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGGCCGCAGTACATGATCGGCTCCGGCAACAACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAAATCACCCAAATCCCGCCAACCAAATTCTCCCAAATTCCATACCCTCACACCAAAATATTTTCAAATTCAATACAAACTGGAAGAGTTTTTAAACGAGATTTTGGTCGCGAGTTGCGGTGCTTGCATGTGCATGTAGATTTGACATTGTCTAGGCTCATTTGTTAAGCCCCAATTGACTTAGTTGATTGAGCTTTTTTTTCTCTCTTTTTTATGATGGTGTGCTCTTCTTGATGGCCTTTTTAATGTACTGGTACTGTAATCGGGCAGTAAGCCATGTTGTCTTCCTGTGCTCTTTTGAGAGAACAAAATGGGCATAAAGCCCATATATGTCATAACAAAACTAGGCTTGCTGTTT]




>consensus_12627#2
GCCATCGCCCCTGCCCTCGATTATTCCCCCCTTCTCTCGCCTCGCTCCGAGCAGGCGTAT
GCGTCCTGACCAAGGTGTTCGACGTGTTGCCGCAGGCCGGTGGTGGACTGGGCGAAGGCG
GCCGGCGTGGGGCAATTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCG
CACATCGAGGGGGACGCGGTGAAGGAGAACGCCGGGCATGTCAGCGTGGAGAAGTACATC
GCGGAGCAGTTCGGCAGCTGGGCGTCGTTCCGGCCGCAGTACATGATCGGCTCCGGCAAC
AACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAAATCACCCAAATCCCGCCAACCAAA
TTCTCCCAAATTCCATACCCTCACACCAAAATATTTTCAAATTCAATACAAACTGGAAGA
GTTTTTAAACGAGATTTTGGTCGCGAGTTGCGGTGCTTGCATGTGCATGTAGATTTGACA
TTGTCTAGGCTCATTTGTTAAGCCCCAATTGACTTAGTTGATTGAGCTTTTTTTTCTCTC
TTTTTTATGATGGTGTGCTCTTCTTGATGGCCTTTTTAATGTACTGGTACTGTAATCGGG
CAGTAAGCCATGTTGTCTTCCTGTGCTCTTTTGAGAGAACAAAATGGGCATAAAGCCCAT
ATATGTCATAACAAAACTAGGCTTGCTGTTT

consensusID : consensus_12627#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [GGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGCGGCGGCGGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACGAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTGGGGCGACCCGGCGGACGTCGGCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGCGCAATTCCTCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCGCACGTCGAGGGGGACGCGGTGAAGGACGAGCGCGGGGCATGTGGGCGTGGAGAAGTACATCGCGGAGAGGTTCGTCAGAGCTCCTCCATCCAAGCACCTCCTTCGCGCCTCGGGTCCGGTAA]

[+] EMBL BU666991             [GGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGCGGCGGCGGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACGAAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTGGGGCGACCCGGCGGACGTCGGCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGCGCAATTCCTCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCGCACGTCGAGGGGGACGCGGTGAAGGACGAGCGCGGGGCATGTGGGCGTGGAGAAGTACATCGCGGAGAGGTTCGTCAGAGCTCCTCCATCCAAGCACCTCCTTCGCGCCTCGGGTCCGGTAA]




>consensus_12627#3
GGAGGGTGGGCGCGGTGACCGTGCGCGCGCAGGCGGCGGCGGGGGCGGGGAAGAAGAGCG
TGCTGATCGTGAACACGAATGGCGGCGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGG
ACCTGCTCGCCGCGGGCCACGCCGTCACCGTGCTCACCGTCGGCGACGAGGGCTCCGACG
AAGATGAAGAAGCCGCCCTTCTCCCGCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACG
GTGTGGGGCGACCCGGCGGACGTCGGCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTC
GTCCTCGACAACAACGGCAAGGACCTCGACGCCGTCAAGCCGGTGGTGGACTGGGCGAAG
GCGGCCGGCGTGGCGCAATTCCTCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGAC
GAGCCGCCGCACGTCGAGGGGGACGCGGTGAAGGACGAGCGCGGGGCATGTGGGCGTGGA
GAAGTACATCGCGGAGAGGTTCGTCAGAGCTCCTCCATCCAAGCACCTCCTTCGCGCCTC
GGGTCCGGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12627#0      TCCCAGTGCCCACCACTCATCACCTCCCCCCTCTCATCCTCTCCTCCTCCTCCAATGGCC 60
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      TTCTCCTCCACCGCCGCCGCCGCCTCCACCGCCTTCGTCTCTGGGCACCGCCGACGCGGC 120
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      GGCGCGTGCCACCTGCTGTCCTCCTCTTTCCTCATCGCGTTCCCGCGCGCCGTCGCGGCG 180
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      -------------------------------------------GATCGGCTCCGGCAACA 17
                                                                                   

consensus_12627#0      AGGAGGTGCGGCGAGGCGGCCGCGGCGCCGAGGAGGGTGGGCGCGGTGACCGTGCGCG-C 239
consensus_12627#3      -------------------------------GGAGGGTGGGCGCGGTGACCGTGCGCG-C 28
consensus_12627#2      --------------------------GCCATCGCCCCTGCCCTCGATTATTCCCCCCTTC 34
consensus_12627#1      ACAAGGACTGCGAGGAGTGGTTCTTCGACAGTAAAATCACCCA-AATCCCCCCAACCAAA 76
                                                                *    *         *   

consensus_12627#0      GCAGGCGGCGGCGGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAAC-ACGAA--TGGCGG 296
consensus_12627#3      GCAGGCGGCGGCGGGGGCGGGGAAGAAGAGCGTGCTGATCGTGAAC-ACGAA--TGGCGG 85
consensus_12627#2      TCTCGCCTCGCTCCGAGCAGGCGTATGCGTCCTGACCAAGGTGTTCGACGTG--TTGCCG 92
consensus_12627#1      TTCTCCCAAATTTCAAACCGCCCCAAACAACATTCTTCAATTTGAAGACAAAATTGTCAA 136
                            *           * *          * *        *     **     *  *  

consensus_12627#0      CGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGT 356
consensus_12627#3      CGGGCACGCCGTGATCGGGTTCTACCTCGCCAAGGACCTGCTCGCCGCGGGCCACGCCGT 145
consensus_12627#2      CAGGCCGGTGGTGGACTGGGCGAAGGCGGCCGGCGTGGGGCAATTCGTCAGCAGCGCCGG 152
consensus_12627#1      TTTTTTTACTGTAGTCTTTTTTAAAACTATCGAATTAAGACAAAACTGTCGATTCTTTTT 196
                                 **   *       *      *         *    *    *   *     

consensus_12627#0      CACCGTGCTCACCGTCGGCGACGAGGGCTCCGAC-AAGATGAAGAAGCCGCCCTTCTCCC 415
consensus_12627#3      CACCGTGCTCACCGTCGGCGACGAGGGCTCCGACGAAGATGAAGAAGCCGCCCTTCTCCC 205
consensus_12627#2      CATC-TACACGCC--CAGCGACGAGCCGCCGCAC---ATCGAGGGGGACGCGGTGAAGGA 206
consensus_12627#1      TCTTTAACTTTTGAACTATTTCGAAATAT-GAAT---AAAAAATTGGCAATTTTTTATGT 252
                              *       *     ***        *        *    *      *      

consensus_12627#0      GCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTGGGGCGACCCGGCGGACGTCG 475
consensus_12627#3      GCTTCTCGGAGCTGACGAGTGCCGGGGCGACGACGGTGTGGGGCGACCCGGCGGACGTCG 265
consensus_12627#2      GAACGCCGGGCATGTCA---GCGTGGAGAAGTACATCGCGGAGCAGTTCGGCAGCTG--G 261
consensus_12627#1      AAATTATGAATTGTTTGAATTTGAAAACAAAACTTTCAAATTTTTAACTGTAAGTTCTGA 312
                              *                     *                   *   *      

consensus_12627#0      GCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACC 535
consensus_12627#3      GCGCGGCGGTCGGCGGCGGCGCCTCGTTCGACGTCGTCCTCGACAACAACGGCAAGGACC 325
consensus_12627#2      GCGTCGTT-CCGGCCGCAGTACAT-GATCGGCTCCGGCAACAACAAGGACTGCGAGGAGT 319
consensus_12627#1      CAAATCCAAATTATGAGGACAAAACCATCAATTTTTTTTTTGCTGTAAACTTTGAATAAA 372
                                                  **                   **    *  *  

consensus_12627#0      TCGACGCCGTCAAGCCGGTGGTG--GACTGGGCGAAGGCGGCCGGCGTGGCG-CAATTCC 592
consensus_12627#3      TCGACGCCGTCAAGCCGGTGGTG--GACTGGGCGAAGGCGGCCGGCGTGGCG-CAATTCC 382
consensus_12627#2      GGTTCTTCGACAG---TAAAATC--ACCCAAATCCCGCCAACCAAATTCTCC-CAAATTC 373
consensus_12627#1      TCCGATTTGTCAAATTGTCGGTGTAAATTTCCAAGAAATATTCGAATTGAAGTCAAGTTA 432
                               * **         *                    *    *     *** *  

consensus_12627#0      TCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCGCACGTCGAGGGGG 652
consensus_12627#3      TCTTCGTCAGCAGCGCCGGCATCTACACGCCCAGCGACGAGCCGCCGCACGTCGAGGGGG 442
consensus_12627#2      CATACCCTCACACCAA-AATATTTTCAAATTCAAT-ACAAACTGGAAGAGTTTTTAAACG 431
consensus_12627#1      TTTTTTTGGTTTCAAATTGTTTTTGCAGGGATTGTGAGGGGGAGGCCGGTGCCGATCCCG 492
                         *                  * * **         *      *               *

consensus_12627#0      ACGCGGTGAAGGA-GAGCGCGGGGCATG--TGGGCGTGGA-GAAGT-AC-ATCGCGGAGC 706
consensus_12627#3      ACGCGGTGAAGGACGAGCGCGGGGCATG--TGGGCGTGGA-GAAGT-AC-ATCGCGGAGA 497
consensus_12627#2      AGATTTTGGTCGCGAGTTGCGGTGCTTGCATGTGCATGTA-GATTTGAC-ATTGTCTAG- 488
consensus_12627#1      GGGTCGGGGATGC-AGGTGACGAACATAT-CGCACGTGCGCGACCTGGCGAGCATGGTGG 550
                              *   *      *  *  * *    *  * **   **  *  * *       * 

consensus_12627#0      AGTTCGGC-AGCTGGGCGTCGTTCCGGC-CGCAGTACATGA-TCGGCTCCGGCAACAACA 763
consensus_12627#3      GGTTCGTC-AGAGCTCCTCCATCCAAGCACCTCCTTCGCGCCTCGGGTCCGGTAA----- 551
consensus_12627#2      -GCTCATT-TGTTAAGCCCCAATTGACTTAGTTGATTGAGCTTTTTTTTCTCTCTTTTTT 546
consensus_12627#1      CGCTCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACC 610
                        * **     *     *  *                      *    * *          

consensus_12627#0      AGGACTGCGAGGAGTGGTTCTTCGACAGGATTGTGAGGGGGAGGCCGGTGCCGATCCCGG 823
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ATGATGGTGTGCT----CTTCTTGATGGCCTTTTTAATGTACTGGTACTGTAATCGGGCA 602
consensus_12627#1      GCGCCGTCACCTTCAACGGCCTCGTCAAGAT-----GTGCGCCGCCGCCGCCGGCGCCCA 665
                                                                                   

consensus_12627#0      GGTCGGGGATGCAGGTGACGAACATATCGCACGTGCGCGACCTGGCGAGCATGGTGGCGC 883
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      GTAAGCCATGTTGTCTTCCTGTGCTCTTTTGAGAGAACAAAATGGGCATAAAGCCCATAT 662
consensus_12627#1      GCCGGAGATCCTCCACTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCC 725
                                                                                   

consensus_12627#0      TCGCCGTGGAGAGCCCCGGCGCGGCGGCGGGGAGGATCTTCAACTGCGTCTCCGACCGCG 943
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ATGTCATAACAAAACTAGGCTTGCTGTTT------------------------------- 691
consensus_12627#1      CTTCCGCAACATGCAC-------------------------------------------- 741
                                                                                   

consensus_12627#0      CCGTCACCTTCAACGGCCTCGTCAAGATGTGCGCCGCCGCCGCCGGCGCCCAGCCGGAGA 1003
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      TCCTCCACTACGACCCCGCCGCCGTCGGCGTCGACGCCAAGAAGGCCTTCCCCTTCCGCA 1063
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      ACATGCACTTCTACGCGGAGCCGAGGGCGGCGAAGGAGGTGCTTGGATGGAGGAGCTCGA 1123
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      CGAACCTGCCGGAGGACCTCAAGGAGAGGTTCGCGGAGTACGCCAGCAGCGGCAGAGGGC 1183
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      AGAAGGAGATGAGCTTCGACCTCGACGACAAGATCATCGCCGCCGCCTAACAACACCCAT 1243
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      CTCATCTCACCTCGTCATGGTCAAATACAAATACAAAGTGCTCGGGGATCTCTTCTTCTC 1303
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      GTGATTTATTTTCTTCTCCCTCTGTTTCTTTGGTTCCTCTTCTCATACCGGAAGCATAGA 1363
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      GAAATGCAAAACTGAACAATTATATATGTAAATGCTAGGAAAATGCTGTTACAAATAAGT 1423
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      GAATAAGATGAGTTTTCGCTTTTCGTTTTTCATTTTTCCATCACATATCCAATATGAGAA 1483
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      TGGAACTTTGCAGAGTCAATCAGATTCAGCACATTTTTTTGGTTTTAAAAAAAAAAAAAA 1543
consensus_12627#3      ------------------------------------------------------------
consensus_12627#2      ------------------------------------------------------------
consensus_12627#1      ------------------------------------------------------------
                                                                                   

consensus_12627#0      AAAAAAAAAAAAAAAAAAACTCGAGA 1569
consensus_12627#3      --------------------------
consensus_12627#2      --------------------------
consensus_12627#1      --------------------------