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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 3075 fasta sequence
[CTAGCAGAGCACTCGCGGAGGCGAGGAGAGAGAGAGAGAGAGAGAGAGGTTGGAAGAGGAGGGGAGAGTCCACGTGAGTGAGAGGAGGAGGAGGAGGAGGAGATCCCTCTCCCGCGCGCATCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAG-CAGAGAATGTTGGAATATCTCTT-CAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGTTGTGGAGCATGTGCAAGAGAAGGAGCCTACCCCTGAACCCAACACAGCCAACCATCAGTCCCCTGCGAAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCAACTACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCACAATTTAGCTTGCAGAGCGACTCTTAATCCAGAA-GATAAATTTTGCAGACGCTGTTCATGCTGTATTTGTTTCAAGTACGATGACAATAAGGATCCTAGCCTCTGGTTATTCTGTAGTTCAGATCAACCCTTGCAGAAAGATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATCATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAACAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGGTTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAGTACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGTCCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCTGAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCTCCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAAGCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCCAAAATGAAGACAAGCTGTCAGAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCT-GGGCTAGACCAAAACAAT-GGGAGCCCAAAGGCAAACAGTGGT-GGTCAGTCTGATCCTTCTTCAGAAGGTGTGGACTCAAATAATAACACTGCGGTGTATGCTGATCTCAATAAATCACCAGAAAGTGATTTTGAATATTGTGAAAATCCTGAGATACTTGATTCAGACAAAGCAAGTCATCACCCCAATGAACCTACAAACAACTCACAGAGTATGCCGATGGTCGTAGCTAGGGTTACGGAGGTATCTGGATTGGAGGAAGCTCCTGGACTCTCAGCATCAGCTTTGGACGAGGAGCCCAATTCAGCAGTTCAAACACAATTACTTAGAGAATCCTCAAATTCAATGGAGCAGAACCAGAGAAGCGAAGTTCCTGGATCACAGGATGCATCAAATGCTCCTGCTGGAAATGAGGTGGTGATTGTTCCACCTCGATATTCTGGCTCTATTCCACCAACTGCACCTAGATATATGGAAAATGGTAAGGATATCAGTGGGAGGAGCTTGAAAGCAAAACCTGGTGATAACATCCTTCAAAATGGCTCTTCCAAGCCTGAAAGGGAACCAGGGAATTCTTCAAATAAAAGAACATCAGGTAAATGTGAGGAAATCGGCCACAAGGATGGATGCCCAGAAGCATCTTATGAGTACTGTGTTAAGGTGGTCAGGTGGCTGGAATGTGAGGGTTACATTGAGACCAACTTCAGAGTGAAGTTTCTGACTTGGTATAGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAAGG]
[+] EMBL AK101341 [CTAGCAGAGCACTCGCGGAGGCGAGGAGAGAGAGAGAGAGAGAGAGAGGTTGGAAGAGGAGGGGAGAGTCCACGTGAGTGAGAGGAGGAGGAGGAGGAGGAGATCCCTCTCCCGCGCGCATCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAG CAGAGAATGTTGGAATATCTCTT CAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGTTGTGGAGCATGTGCAAGAGAAGGAGCCTACCCCTGAACCCAACACAGCCAACCATCAGTCCCCTGCGAAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCAACTACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCACAATTTAGCTTGCAGAGCGACTCTTAATCCAGAA GATAAATTTTGCAGACGCTGTTCATGCTGTATTTGTTTCAAGTACGATGACAATAAGGATCCTAGCCTCTGGTTATTCTGTAGTTCAGATCAACCCTTGCAGAAAGATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATCATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAACAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGGTTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAGTACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGTCCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCTGAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCTCCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAAGCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCCAAAATGAAGACAAGCTGTCAGAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCT GGGCTAGACCAAAACAAT GGGAGCCCAAAGGCAAACAGTGGT GGTCAGTCTGATCCTTCTTCAGAAGGTGTGGACTCAAATAATAACACTGCGGTGTATGCTGATCTCAATAAATCACCAGAAAGTGATTTTGAATATTGTGAAAATCCTGAGATACTTGATTCAGACAAAGCAAGTCATCACCCCAATGAACCTACAAACAACTCACAGAGTATGCCGATGGTCGTAGCTAGGGTTACGGAGGTATCTGGATTGGAGGAAGCTCCTGGACTCTCAGCATCAGCTTTGGACGAGGAGCCCAATTCAGCAGTTCAAACACAATTACTTAGAGAATCCTCAAATTCAATGGAGCAGAACCAGAGAAGCGAAGTTCCTGGATCACAGGATGCATCAAATGCTCCTGCTGGAAATGAGGTGGTGATTGTTCCACCTCGATATTCTGGCTCTATTCCACCAACTGCACCTAGATATATGGAAAATGGTAAGGATATCAGTGGGAGGAGCTTGAAAGCAAAACCTGGTGATAACATCCTTCAAAATGGCTCTTCCAAGCCTGAAAGGGAACCAGGGAATTCTTCAAATAAAAGAACATCAGGTAAATGTGAGGAAATCGGCCACAAGGATGGATGCCCAGAAGCATCTTATGAGTACTGTGTTAAGGTGGTCAGGTGGCTGGAATGTGAGGGTTACATTGAGACCAACTTCAGAGTGAAGTTTCTGACTTGGTATAGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAA ]
[+] EMBL CA753634 [ GAGGAGATCCCNCNCCCGCGCGCATCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAG CAGAGAATGTNGGAATATCTCTT CAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGCTGTGGAGCATGTGCAAGAGAAGGAGCCTACCCCTGAACCCCACACAGCCAACCATCAGTCCCCTGCGAAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCACCTACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCCCCATTTAGCCTGCAGAGCGACTCTTAAT CAGAAGGATAAA TTTGCCAACGCTGTNCATGCTGTATTGGTTTCAAGTACGATGACCATAGGGATCCTA CCCCCGGGTATTCTGTAnt ]
[+] EMBL AU062695 [ TCGCCGATCCCCAATTCGCCATGNATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTNCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTNTCNANGNNNGAGAATNTTGGAATATCTNTTATAGAGTTGTGACTGGCAAATCATNTGGTGGTGGCGTTGTNGAGCATGTGCAAGAGAAGGAGC ]
[+] EMBL CB670928 [ AACCCTTGCAGAAAGATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATCATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAACAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGGTTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAGTACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGTCCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCTGAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCTCCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAAGCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAANGAGTTTGGATCGTGGGAAGCCCAAATGAAG ]
[+] EMBL CF325355 [ GTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCCAAAATGAAGACAAGCTGTCAAAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCTGGGGCTAGACCAAAACAATGGGGAGCCCAAAGGCAAACAGTGGTGGGTCAG ]
[-] EMBL CB670929 [ AGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACC ]
[-] EMBL CB628913 [ TCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCAGTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGT ]
[+] EMBL AK062072 [ ACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAAGG]
[+] EMBL CA764167 [ GATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACA ]
consensusID : consensus_12633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[GCTNGGNAAGAGGAGGGGAGANTCCACGTAANNANAGGAGGAGGANANNGAGGAGATCCCTCTCCCGCNCGCATCCNCCCCTNTGGCCGATCCCCAATTNGCCATGGNTCCACCCTACGCAGGAGTACCTATTGNTCCTGCTAAATNCCGNTTGATGAGTGTGGATGAAAAGCGGGAACTTNTCCGTNAATTATCGAAGCGGCCAGAAAGTGCTCCTNACAAACTGCAGTCTTGGAGTCGCCGTGAAATTNTAGAGATTCTTTNTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAGCAGAGAATGTTNGAATATCTCTTCAGAGTTGTGACTGGCAAATAATCTGGTGGTGGCGTTNTGGAGCATGTGCA]
[+] EMBL AU082889 [GCTNGGNAAGAGGAGGGGAGANTCCACGTAANNANAGGAGGAGGANANNGAGGAGATCCCTCTCCCGCNCGCATCCNCCCCTNTGGCCGATCCCCAATTNGCCATGGNTCCACCCTACGCAGGAGTACCTATTGNTCCTGCTAAATNCCGNTTGATGAGTGTGGATGAAAAGCGGGAACTTNTCCGTNAATTATCGAAGCGGCCAGAAAGTGCTCCTNACAAACTGCAGTCTTGGAGTCGCCGTGAAATTNTAGAGATTCTTTNTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAGCAGAGAATGTTNGAATATCTCTTCAGAGTTGTGACTGGCAAATAATCTGGTGGTGGCGTTNTGGAGCATGTGCA]
consensusID : consensus_12633#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[AAAGGCCNCCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTNCCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAAAAAAAAAAAAA]
[+] EMBL AU082890 [AAAGGCCNCCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTNCCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12633#0 CTAGCAGAGCACTCGCGGAGGCGAGGAGAGAGAGAGAGAGAGAGAGAGGTTGGAAGAGGA 60
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GGGGAGAGTCCACGTGAGTGAGAGGAGGAGGAGGAGGAGGAGATCCCTCTCCCGCGCGCA 120
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 TCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATT 180
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTA 240
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 TCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTA 300
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAGCAGAGA 360
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ATGTTGGAATATCTCTTCAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGTTGTGGAG 420
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 CATGTGCAAGAGAAGGAGCCTACCCCTGAACCCAACACAGCCAACCATCAGTCCCCTGCG 480
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 AAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCAACT 540
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCACAATTTAGCTTGCAGAGCG 600
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ACTCTTAATCCAGAAGATAAATTTTGCAGACGCTGTTCATGCTGTATTTGTTTCAAGTAC 660
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GATGACAATAAGGATCCTAGCCTCTGGTTATTCTGTAGTTCAGATCAACCCTTGCAGAAA 720
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATC 780
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAA 840
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 CAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGG 900
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 TTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAG 960
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 TACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGT 1020
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 CCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCT 1080
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCT 1140
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 CCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAA 1200
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGAT 1260
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCA 1320
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACA 1380
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 AGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCC 1440
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 AAAATGAAGACAAGCTGTCAGAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCT 1500
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GGGCTAGACCAAAACAATGGGAGCCCAAAGGCAAACAGTGGTGGTCAGTCTGATCCTTCT 1560
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 TCAGAAGGTGTGGACTCAAATAATAACACTGCGGTGTATGCTGATCTCAATAAATCACCA 1620
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GAAAGTGATTTTGAATATTGTGAAAATCCTGAGATACTTGATTCAGACAAAGCAAGTCAT 1680
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 CACCCCAATGAACCTACAAACAACTCACAGAGTATGCCGATGGTCGTAGCTAGGGTTACG 1740
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GAGGTATCTGGATTGGAGGAAGCTCCTGGACTCTCAGCATCAGCTTTGGACGAGGAGCCC 1800
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 AATTCAGCAGTTCAAACACAATTACTTAGAGAATCCTCAAATTCAATGGAGCAGAACCAG 1860
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 AGAAGCGAAGTTCCTGGATCACAGGATGCATCAAATGCTCCTGCTGGAAATGAGGTGGTG 1920
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ATTGTTCCACCTCGATATTCTGGCTCTATTCCACCAACTGCACCTAGATATATGGAAAAT 1980
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GGTAAGGATATCAGTGGGAGGAGCTTGAAAGCAAAACCTGGTGATAACATCCTTCAAAAT 2040
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GGCTCTTCCAAGCCTGAAAGGGAACCAGGGAATTCTTCAAATAAAAGAACATCAGGTAAA 2100
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 TGTGAGGAAATCGGCCACAAGGATGGATGCCCAGAAGCATCTTATGAGTACTGTGTTAAG 2160
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GTGGTCAGGTGGCTGGAATGTGAGGGTTACATTGAGACCAACTTCAGAGTGAAGTTTCTG 2220
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ACTTGGTATAGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAAC 2280
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCC 2340
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 ATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAA 2400
consensus_12633#2 ----------AAAGGCCNCCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAA 50
consensus_12633#1 ---------GCTNGGNAAGAGGAGGGGAGANTCCACGTAANNANAGGAGGAGGANANNGA 51
** * * * * * * * * * *
consensus_12633#0 AGAGAGGGGA-----GCTCGTACCGTTCTCTTTGTAGGGGAGCATATTT----TGGTCCC 2451
consensus_12633#2 AGAGAGGGGA-----GCTCGTNCCGTTCTCTTTGTAGGGGAGCATATTT----TGGTCCC 101
consensus_12633#1 GGAGATCCCTCTCCCGCNCGCATCCNCCCCTNTGGCCGATCCCCAATTNGCCATGGNTCC 111
**** ** ** * * ** ** * * *** *** **
consensus_12633#0 ATTCTTTCGTAGCAG-----ATCGTTGC-ATTGATTCTTCATTGG-AAATTTCATTGAAG 2504
consensus_12633#2 ATTCTTTCGTAGCAG-----ATCGTTGC-ATTGATTCTTCATTGG-AAATTTCATTGAAG 154
consensus_12633#1 ACCCTA-CGCAGGAGTACCTATTGNTCCTGCTAAATNCCGNTTGATGAGTGTGGATGAAA 170
* ** ** ** ** ** * * * * * * *** * * * ****
consensus_12633#0 CG-GTTAACTTATAC--AATCTGTTCA--TTGCTCTACTTTATTTGCTATGA-CAGTAGG 2558
consensus_12633#2 CG-GTTAACTTATAC--AATCTGTTCA--TTGCTCTACTTTATTTGCTATGA-CAGTAGG 208
consensus_12633#1 AGCGGGAACTTNTCCGTNAATTATCGAAGCGGCCAGAAAGTGCTCCTNACAAACTGCAGT 230
* * ***** * * * * * * ** * * * * * * * **
consensus_12633#0 TTTAATTTATCCAGCAACTTAT-----TTCTGTTTTTTCACTTAGGAGTCCATAGTTTAC 2613
consensus_12633#2 TTTAATTTATCCAGCAACTTAT-----TTCTGTTTTTTCACTTAGGAGTCCATAGTTTAC 263
consensus_12633#1 CTTGGAGTCGCCGTGAAATTNTAGAGATTCTTTNTGCTGATTTAGGAAGGGAAAGGAAGT 290
** * ** ** ** * **** * * * * ****** * **
consensus_12633#0 A-GTTCTGTTATCCGTACCGCCA-TGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGG 2671
consensus_12633#2 A-GTTCTGTTATCCGTACCGCCA-TGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGG 321
consensus_12633#1 ACACTGGATTATCGAAGCAGAGAATGTTNGAATATCTCTTCA-GAGTTGTGACTGGCAAA 349
* * ***** * * * **** * * * * *** *** ****
consensus_12633#0 TCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCT 2731
consensus_12633#2 TCAGCTTTAGGAAAAAAAAAAAAA------------------------------------ 345
consensus_12633#1 TAATCTGGTGGTGGCGTTNTGGAGCATGTGCA---------------------------- 381
* * ** ** *
consensus_12633#0 AGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCA 2791
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGAT 2851
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATG 2911
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAAT 2971
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 GTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAG 3031
consensus_12633#2 ------------------------------------------------------------
consensus_12633#1 ------------------------------------------------------------
consensus_12633#0 TTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAAGG 3075
consensus_12633#2 --------------------------------------------
consensus_12633#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||