Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12638 cluster # 12638       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12638#0 length = 1205 sequences # 9  
consensus_12638#1 length = 689 sequences # 1  
consensus_12638#2 length = 665 sequences # 1  

consensusID : consensus_12638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1205
fasta sequence
                              [CCGCTTCACAAATCACAACATCCTGACATACACCTCACACACACTCCCCTTCTTGTTGGTTTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATGAACATCTTGAACCAGCCGATCAACCCTGGCG-GCCACCCGGCGTTCCCGGCGGCAAGGGAGACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAGCACGGCCGCCGCCGTGGGGCGGGCGCACGCCGGGCAGTCCCCGCGGTGGCAGGCGCAGACGCTGCGCCGGCCAAGCAGCTACGTCGGCGTCGAGCACGACGAGCCGGCGGACGCCGCCGCCGCCGCCGCGCTGGCGCCGTTCCAGCCGCTGACGCTCGACTTCCTGCGGTCGCTCCTGGACAGGAACGCTGCCGTGGCGGCCGACCAGGGCGGCGGCGCGGACGTCGCGCCGCCGCCGCCGCCGCTGCACGCGCTGCGGGTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGACATGACTATTTTCAAATGAGAACATGTATCAGCATCTAGCCAGTAACTGCGCCATGAAATTCAGC]

[+] EMBL CB661788             [CCGCTTCACAAATCACAACATCCTGACATACACCTCACACACACTCCCCTTCTTGTTGGTTTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATGAACATCTTGAACCAGCCGATCAACCCTGGCG GCCACCCGGCGTTCCCGGCGGCAAGGGAGACCGGCCAGCTGATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB655935             [CCGCTTCACAAATCACAACATCCTGACATACACCTCACACACACTCCCCTTCTTGTTGGTTTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATGAACATCTTGAACCAGCCGATCAACCCTGGCG GCCACCCGGCGTTCCCGGCGGCAAGGGAGACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAGCACGGCCGCCGCCGTGGGGCGGGCGCACGCCGGGCAGTCCCCGCGGTGGCAGGCGCAGACGCTGCGCCGGCCAAGCAGCTACGTCGGCGTCGAGCACGACGAGCCGGCGGACGCCGCCGCCGCCGCCGCGCTGGCGCCGTTCCAGCCGCTGACGCTCGACTTCCTGCGGTCGCTCCTGGACAGGAACGCTGCCGTGGCGGCCGACCAGGGCGGCGGCGCGGACGTCGCGCCGCCGCCGCCGCCGCTGCACGCGCTGCGGGTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCACGCCAGAACGAGCTCATCGCCCGCAAGATGCGCCAGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK060375             [                     CCTGACATACACCTCACACACACTCCCCTTCTTGTTGGTTTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATGAACATCTTGAACCAGCCGATCAACCCTGGCG GCCACCCGGCGTTCCCGGCGGCAAGGGGGACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAGCACGGCCGCCGCCGTGGGGCGGGCGCACGCCGGGCAGTCCCCGCGGTGGCAGGCGCAGACGCTGCGCCGGCCAAGCAGCTACGTCGGCGTCGAGCACGACGAGCCGGCGGACGCCGCCGCCGCCGCCGCGCTGGCGCCGTTCCAGCCGCTGACGCTCGACTTCCTGCGGTCGCTCCTGGACAGGAACGCTGCCGTGGCGGCCGACCAGGGCGGCGGCGCGGACGTCGCGCCGCCGCCGCCGCCGCTGCACGCGCTGCGGGTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGACATGACTATTTTCAAATGAGAACATGTATCAGCATCTAGCCAGTAACTGCGCCATG         ]
[+] EMBL AU173863             [                               ACCTCACACACACTCCCCTTCTTGTTGGTTTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATGAACATCTTGAACCAGCCGATCAACCCTGGCG GCCACCCGGCGTTCCCGGCGGCAAGGGAGACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAGCACGGCCGCCGCCGTGGGGCGGGCGCACGCCGGGCAGTCCCCGCGGTGGCAGGCGCAGACGCTGCGCCGGCCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB680555             [                                             CCCCTTCTTGTTGGTTTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATGAACATCTTGAACCAGCCGATCAACCCTGGCG GCCACCCGGCGTTCCCGGCGGCAAGGGAGACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAGCACGGCCGCCGCCGTGGGGCGGGCGCACGCCGGGCAGTCCCCGCGGTGGCAGGCGCAGACGCTGCGCCGGCCAAGCAGCTACGTCGGCGTCGAGCACGACGAGCCGGCGGACGCCGCCGCCGCCGCCGCGCTGGCGCCGTTCCAGCCGCTGACGCTCGACTTCCTGCGGTCGCTCCTGGACAGGAACGCTGCCGTGGCGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF325522             [                                                               TCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATGAACATCTTGAACCAGCCGATCAACCCTGGCGTGTC CCCGGCGTTCCCGGCGGCAAGGGAGACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB665011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCC  ATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGACATGACTATTTTCAAATGAGAACATGTATCAGCATCTAGCCAGTAACTGCGCCATGAAATTCAGC]
[-] EMBL CB661789             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              gACATTAGCGCCGTTCGCCACCGGCGGCTCGCCGGAGTATATCCAACTATAGCTCCGCCGTAAACCCAGTAACCATCCCCCATGCTGAACTTTACAGAAGAACAACACCGAAGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCCCAGGAGTTGTATAACAGACATGACTATTTTCAAATGAGAAGATGTATCAGCAT                              ]
[+] EMBL AU173864             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCGCCGTCCGCCGCCGGCGGCTCGCCGGNCTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGNTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGACATGACTATTTTCAAATGAGAACATGTATCAGCATCTAGCCAGTAAaaaaa              ]


>consensus_12638#0 CCGCTTCACAAATCACAACATCCTGACATACACCTCACACACACTCCCCTTCTTGTTGGT TTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATG AACATCTTGAACCAGCCGATCAACCCTGGCGGCCACCCGGCGTTCCCGGCGGCAAGGGAG ACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAGCACG GCCGCCGCCGTGGGGCGGGCGCACGCCGGGCAGTCCCCGCGGTGGCAGGCGCAGACGCTG CGCCGGCCAAGCAGCTACGTCGGCGTCGAGCACGACGAGCCGGCGGACGCCGCCGCCGCC GCCGCGCTGGCGCCGTTCCAGCCGCTGACGCTCGACTTCCTGCGGTCGCTCCTGGACAGG AACGCTGCCGTGGCGGCCGACCAGGGCGGCGGCGCGGACGTCGCGCCGCCGCCGCCGCCG CTGCACGCGCTGCGGGTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAG CTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTC GTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTC ATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGAC CAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTC CGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCA TATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGT TTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTG AGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTA AACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCAC AGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGA CATGACTATTTTCAAATGAGAACATGTATCAGCATCTAGCCAGTAACTGCGCCATGAAAT TCAGC



consensusID : consensus_12638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence
                              [GTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGAGATGACTATTTTCAAATGAGAACATGTATCAGCAAAAAAAAGGA]

[-] EMBL CB654754             [GTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGAGATGACTATTTTCAAATGAGAACATGTATCAGCAAAAAAAAGGA]


>consensus_12638#1 GTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAGCTCATCGCCCGCAAG ATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTG ATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTC AAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCAC CCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTC GCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAAC TCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTG TTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTAC TGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCT ATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGT TAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGAGATGACTATTTTCAA ATGAGAACATGTATCAGCAAAAAAAAGGA



consensusID : consensus_12638#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [GACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGACATGACTATTTTCAAAGGAGAACATGTATCAGCATCTAGCCAAAAAAAAATAAAAAGA]

[-] EMBL CB655936             [GACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGACATGACTATTTTCAAAGGAGAACATGTATCAGCATCTAGCCAAAAAAAAATAAAAAGA]


>consensus_12638#2 GACCGAGCTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGA GAACGTCGTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTC CCACGTCATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTC CTTCGACCAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAG CGCCGTCCGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCA GTAACCATATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAA CAACAGTTTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGT TCAGCTGAGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCG GAAATTAAACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGG GAGTCACAGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTA TAACAGACATGACTATTTTCAAAGGAGAACATGTATCAGCATCTAGCCAAAAAAAAATAA AAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12638#0      CCGCTTCACAAATCACAACATCCTGACATACACCTCACACACACTCCCCTTCTTGTTGGT 60
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      TTCTCCCCCAATTCGAGCCGAGGTTGAGCTGAGCTGAGCTCTCGCAGAGACAGGGCGATG 120
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      AACATCTTGAACCAGCCGATCAACCCTGGCGGCCACCCGGCGTTCCCGGCGGCAAGGGAG 180
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      ACCGGCCAGCTGATGCCGGCGTCAGTCCGCTTCGACGGCCTGTCGACGCAGCAGAGCACG 240
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      GCCGCCGCCGTGGGGCGGGCGCACGCCGGGCAGTCCCCGCGGTGGCAGGCGCAGACGCTG 300
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      CGCCGGCCAAGCAGCTACGTCGGCGTCGAGCACGACGAGCCGGCGGACGCCGCCGCCGCC 360
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      GCCGCGCTGGCGCCGTTCCAGCCGCTGACGCTCGACTTCCTGCGGTCGCTCCTGGACAGG 420
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      AACGCTGCCGTGGCGGCCGACCAGGGCGGCGGCGCGGACGTCGCGCCGCCGCCGCCGCCG 480
consensus_12638#1      ------------------------------------------------------------
consensus_12638#2      ------------------------------------------------------------
                                                                                   

consensus_12638#0      CTGCACGCGCTGCGGGTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAG 540
consensus_12638#1      ---------------GTGGTGGTGTCGTCCGCCGTGGAGCTCGACGCGCGCCAGACCGAG 45
consensus_12638#2      -----------------------------------------------------GACCGAG 7
                                                                            *******

consensus_12638#0      CTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTC 600
consensus_12638#1      CTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTC 105
consensus_12638#2      CTCATCGCCCGCAAGATGCGCCGGATCACCGGGTTCGCGAGCCTCACCATCGAGAACGTC 67
                       ************************************************************

consensus_12638#0      GTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTC 660
consensus_12638#1      GTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTC 165
consensus_12638#2      GTCGACCCGTCGCTGATCGCCGGCTTCGTCGTCTGCTACGGCCCCGGCGAGTCCCACGTC 127
                       ************************************************************

consensus_12638#0      ATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGAC 720
consensus_12638#1      ATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGAC 225
consensus_12638#2      ATCGACCTCAGCGTCAAGGGCAAGCTCGCCATGCTCAAGAACCGCGTCGACTCCTTCGAC 187
                       ************************************************************

consensus_12638#0      CAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTC 780
consensus_12638#1      CAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTC 285
consensus_12638#2      CAGACCATCGCCCACCCGCACCAATAGTTCCACACACACACACAGCACATTAGCGCCGTC 247
                       ************************************************************

consensus_12638#0      CGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCA 840
consensus_12638#1      CGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCA 345
consensus_12638#2      CGCCGCCGGCGGCTCGCCGGACTATATCCAAGTATAGCTCCGCCGTAAACCCAGTAACCA 307
                       ************************************************************

consensus_12638#0      TATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGT 900
consensus_12638#1      TATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGT 405
consensus_12638#2      TATCCCATGCTGAACTCTACAGAAGAACAACACCGACGACGCGCCGTCGCCAACAACAGT 367
                       ************************************************************

consensus_12638#0      TTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTG 960
consensus_12638#1      TTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTG 465
consensus_12638#2      TTTTCCTATCTATTGTTGTTGCCAATCGTGAGACGCTAGCTACTCGATATGGTTCAGCTG 427
                       ************************************************************

consensus_12638#0      AGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTA 1020
consensus_12638#1      AGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTA 525
consensus_12638#2      AGCCATATATTGTACTGGTAATATTCCCTTGTTCTTGCAGTATATTTTTGGCGGAAATTA 487
                       ************************************************************

consensus_12638#0      AACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCAC 1080
consensus_12638#1      AACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCAC 585
consensus_12638#2      AACAGCGGGTTCTCTATGCTGTTGCAAGGTTGCGGTTTGTATGCGGAATTCGGGAGTCAC 547
                       ************************************************************

consensus_12638#0      AGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGA 1140
consensus_12638#1      AGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGA 645
consensus_12638#2      AGCTCTGTAAAATGTTAGAGCAGAGACTGATGTGAGGAAGCACAGGAGTTGTATAACAGA 607
                       ************************************************************

consensus_12638#0      CATGACTATTTTCAAATGAGAACATGTATCAGCAT------CTAGCCAGTAACTGCGCCA 1194
consensus_12638#1      GATGACTATTTTCAAATGAGAACATGTATCAGCAA------AAAAAAGGA---------- 689
consensus_12638#2      CATGACTATTTTCAAAGGAGAACATGTATCAGCATCTAGCCAAAAAAAAATAAAAAGA-- 665
                        *************** *****************         *                

consensus_12638#0      TGAAATTCAGC 1205
consensus_12638#1      -----------
consensus_12638#2      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)