cluster # 1264

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Oryza sativa
cluster # 1264 cluster # 1264 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1264#0 length = 380 sequences # 1

consensus_1264#1 length = 182 sequences # 1

consensusID : consensus_1264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [TCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGNNTNNCCCCGAAAGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCNGCCGGAAGAGCACCGNACGTTGCGCGGTTTCCGGTTCGNCCCCGGGGGCCCCTTTGAAAATCCCGAGGACCCGANTTACCCTTCCANGGCCCGGTCGTAC]

[+] EMBL AU069098             [TCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGNNTNNCCCCGAAAGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCNGCCGGAAGAGCACCGNACGTTGCGCGGTTTCCGGTTCGNCCCCGGGGGCCCCTTTGAAAATCCCGAGGACCCGANTTACCCTTCCANGGCCCGGTCGTAC]




>consensus_1264#0
TCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACA
TGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGNNTNNCC
CCGAAAGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAG
GAAGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCG
CCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCNGCCGGAAGAGCACCGNACGT
TGCGCGGTTTCCGGTTCGNCCCCGGGGGCCCCTTTGAAAATCCCGAGGACCCGANTTACC
CTTCCANGGCCCGGTCGTAC

consensusID : consensus_1264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [GCGCGANCGGGNCGGACGGCCCGTCGTGGCAGATCTTNGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAANGTTCCATGTTGAACNGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACNCGCGTGACCCCGA]

[-] EMBL AU068696             [GCGCGANCGGGNCGGACGGCCCGTCGTGGCAGATCTTNGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAANGTTCCATGTTGAACNGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACNCGCGTGACCCCGA]




>consensus_1264#1
GCGCGANCGGGNCGGACGGCCCGTCGTGGCAGATCTTNGTGGTAGTAGCAAATATTCAAA
TGAGAACTTTGAAGGCCGAAGAGGAGAAANGTTCCATGTTGAACNGCACTTGCACATGGG
TAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACNCGCGTGACCCC
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1264#0      -------------------------------------------------------TCAAA 5
consensus_1264#1      GCGCGANCGGGNCGGACGGCCCGTCGTGGCAGATCTTNGTGGTAGTAGCAAATATTCAAA 60
                                                                             *****

consensus_1264#0      TGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGT-GAACGGCACTTGCACATGGG 64
consensus_1264#1      TGAGAACTTTGAAGGCCGAAGAGGAGAAANGTTCCATGTTGAACNGCACTTGCACATGGG 120
                      ***************************** ********* **** ***************

consensus_1264#0      TAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGNN--TNNCCCC 122
consensus_1264#1      TAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACNCGCGTGACCCC 180
                      ************************************************     *  ****

consensus_1264#0      GAAAGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGA 182
consensus_1264#1      GA---------------------------------------------------------- 182
                      **                                                          

consensus_1264#0      AGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCC 242
consensus_1264#1      ------------------------------------------------------------
                                                                                  

consensus_1264#0      AACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCNGCCGGAAGAGCACCGNACGTTG 302
consensus_1264#1      ------------------------------------------------------------
                                                                                  

consensus_1264#0      CGCGGTTTCCGGTTCGNCCCCGGGGGCCCCTTTGAAAATCCCGAGGACCCGANTTACCCT 362
consensus_1264#1      ------------------------------------------------------------
                                                                                  

consensus_1264#0      TCCANGGCCCGGTCGTAC 380
consensus_1264#1      ------------------