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Oryza sativa
cluster # 12645 cluster # 12645       Sequences # 11       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12645#0 length = 1313 sequences # 4  
consensus_12645#1 length = 709 sequences # 2  
consensus_12645#2 length = 586 sequences # 1  
consensus_12645#3 length = 583 sequences # 1  
consensus_12645#4 length = 209 sequences # 2  
consensus_12645#5 length = 145 sequences # 1  

consensusID : consensus_12645#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1313
fasta sequence
                              [GCGGCGACGGCGGAGGATAACGGAGGGGGAGGGGGAGGGGACGCCGGGGCGGCGGCGAGGCGGCGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCACTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATGAGTGGCAGGCATGATGAAGATTCTTCAAGAGGGCAAGAAACCCCTTCTACTATAGACTCACATATGAATGGGAATGTCCAGGATGGAGTGCCTGCAGATCAAGATGTGCTGAAGC-TGGTTGATCAGCAGAAGTCTTCTC-TTCCCAGTTCA-CCAATAAACCATGGTATAGC-TGAAC-AGGAAGAGTCAAACCACACTGTTCCTCAGCCATTTGCTCCTGCAACTGAAAGGGA-GGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGTGAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCAGTGACACCCAGGAAGCCTCTGCAAGCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAGTTTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATCAAGAGGGTCCCCCACCTAAGGTTGAACTTAAGAAGGTGCCTCCAACTGGTGCCAAATCACCAAAGACTGGAGTAGCTGCAAAACCCAGAGCGCCCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGAATGTTCCTGTACAAACCTAACTCATGATCCATTCCCATTCCCGTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTGCATTCTCCTTGTAAGAACCTGGGTACAGAGACCATGTGGTATTCGCGTGTTGTAAATTTGTCGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATTTGGCACCCGATATGGCTGTTGGTGTGACATTGTTGTTGATGTATGCCGGCGTTCGCAGATCCAAAAAAAAAAAGACA]

[+] EMBL AU032075             [GCGGCGACGGCGGAGGATAACGGAGGGGGAGGGGGAGGGGACGCCGGGGCGGCGGCGAGGCGGCGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCACTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATGAGTGGCAGGCATGATGAAGATTCTTCAAGAGGGCAAGAAACCCCTTCTACTATAGACTCACATATGAATGGGAATGTCCAGGATGGAGTGCCTGCAGATCAAGATGTGCTGAAGCTTGGTTGATCAGCAGAAGTCTTCTCTTTCCCAGTTCACCCATTAAACCATGGTATAGCTTGAACAAGGAAGAGTCAAACCACACTGTTCCTCAGCCATTTTNTCCTGCAACTNAAAGGGAGGGATTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB678555             [   GCGACCGCGGAGGATAACGGAGGGGGAGGGGGAGGGGACGCCGGGGCGGCGGCGAGGCGGCGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCACTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATGAGTGGCAGGCATGATGAAGATTCTTCAAGAGGGCAAGAAACCCCTTCTACTATAGACTCACATATGAATGGGAATGTCCAGGATGGAGTGCCTGCAGATCAAGATGTGCTGAAGC TGGTTGATCAGCAGAAGTCTTCTC TTCCCAGTTCA CCAATAAACCATGGTATAGC TGAAC AGGAAGAGTCAAACCACACTGTTCCTCAGCCATTTGCTCCTGCAACTGAAAGGGA GGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGTGAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCAGTGACACCCAGGAAGCCTCTGCAAGCTGACAGTACTTCCCATAGTCACGAAGATGATTCATATTCGGTTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB664363             [                                                                                            CAGCACTCCAAGCGGCAAAGGGGTTGTAGAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCTGGTCATACAGAAGTTATGAGTGGCAGGCATGATGAAGATTCTTCAAGAGGGCAAGAAACCCCTTCTACTATAGACTCACATATGAATGGGAATGTCCAGGATGGAGTGCCTGCAGATCAAGATGTGCTGAAGC TGGTTGATCAGCAGAAGTCTTCTC TTCCCAGTTCA CCAATAAACCATGGTATAGC TGAAC AGGAAGAGTCAAACCACACTGTTCCTCAGCCATTTGCTCCTGCAACTGAAAGGGA GGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGTGAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCAGTGACACCCAGGAAGCCTCTGCAAGCTGACAGTACTTCCCATAGACACGAAGATGATTCATATTCGGTTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAGTTTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB664364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCACCTACTTTTATATGTGGTAATCGTCTCGAGAAGAGGGGAGAGTTTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGACACTCGAAGCTGAGGCAAGAAAAAAGGAAGAGCAAGAAGAAGCTCTGAAACATCTAAGGAAGAATTTGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATCAAGAGGGTCCCCCACCTAAGGTTGAACTTAAGAAGGTGCCTCCAACTGGTGCCAAATCACCAAAGACTGGAGTAGCTGCAAAACCCAGAGCGCCCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGAATGTTCCTGTACAAACCTAACTCATGATCCATTCCCATTCCCGTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTGCATTCTCCTTGTAAGAACCTGGGTACAGAGACCATGTGGTATTCGCGTGTTGTAAATTTGTCGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATTTGGCACCCGATATGGCTGTTGGTGTGACATTGTTGTTGATGTATGCCGGCGTTCGCAGATCCAAAAAAAAAAAGACA]


>consensus_12645#0 GCGGCGACGGCGGAGGATAACGGAGGGGGAGGGGGAGGGGACGCCGGGGCGGCGGCGAGG CGGCGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCACTCCAAGCGGCAAAGGGGTTGTA GAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCT GGTCATACAGAAGTTATGAGTGGCAGGCATGATGAAGATTCTTCAAGAGGGCAAGAAACC CCTTCTACTATAGACTCACATATGAATGGGAATGTCCAGGATGGAGTGCCTGCAGATCAA GATGTGCTGAAGCTGGTTGATCAGCAGAAGTCTTCTCTTCCCAGTTCACCAATAAACCAT GGTATAGCTGAACAGGAAGAGTCAAACCACACTGTTCCTCAGCCATTTGCTCCTGCAACT GAAAGGGAGGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGT GAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCA GTGACACCCAGGAAGCCTCTGCAAGCTGACAGTACTTCCCATAGTCACGAAGATGATTCA TATTCGGTTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTT CCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAGTTTTACACA AAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAA AAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAA CCCATGCCAAGCTTCTATCAAGAGGGTCCCCCACCTAAGGTTGAACTTAAGAAGGTGCCT CCAACTGGTGCCAAATCACCAAAGACTGGAGTAGCTGCAAAACCCAGAGCGCCCAAGGGC GTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGAATGTTCCTGTACAAACCTAACTCATG ATCCATTCCCATTCCCGTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACG GCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTGCATTCTCCTTGT AAGAACCTGGGTACAGAGACCATGTGGTATTCGCGTGTTGTAAATTTGTCGAGGTTTTGT AAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATTTGGCACCCGATATGGCTGTTGGTG TGACATTGTTGTTGATGTATGCCGGCGTTCGCAGATCCAAAAAAAAAAAGACA



consensusID : consensus_12645#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 709
fasta sequence
                              [ANCAAGAAGAAGCTCTTGAAACCAACTAAGGGAAGATCTGGTTATTAGNGCAAAAACCCCTGCCAAGCTTCTATCCAAGAGGNTCCCCCCACCTAAGGTTGAACTTAAGAAGGTGCCTCCAACTCGTGCCAAATCACCAAAATTGACACGGAGAAAGAGCTGCAGCGATACCCCTCATACACCAGAGGGTAAAAATGGAAGTGCAGCATGTTGCCGGTTACATCGTCACAGTATTGGGAACTCCAAAGAAGTTAACAGCAGGACCCAATGTTCTCCGAAGAGTGCTCCAAAGACTGGAGTAGCCGCAAAACCCAGAGCGACCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGAATGTTGCTGTACAAACCTAACTCATGATCCATTCCCATTCCCGTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATTCCGTGTTGTAAATTTGTCGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATCTGGCAGCCGATAGGCTGTTGGTGTGACATTGTTGTTGATGTATGGCGGCGTTCGCAGATCCTATGGTATTGTATTTAAGCATCAACTTGTTATTGTTGAAAAAAA]

[+] EMBL AU101679             [ANCAAGAAGAAGCTCTTGAAACCAACTAAGGGAAGATCTGGTTATTAGNGCAAAAACCCCTGCCAAGCTTCTATCCAAGAGGNTCCCCCCACCTAAGGTTGAACTTAAGAAGGTGCCTCCAACTCGTGCCAAATCACCAAAATTGACACGGAGAAAGAGCTGCAGCGATACCCCTCATACACCAGAGGGTAAAAATGGAAGTGCAGCATGTTGCCGGTTACATCGTCACAGTATTGGGAACTCCAAAGAAGTTAACAGCAGGACCCAATGTTCTCCGAAGAGTGCTCCAAAGACTGGAGTAGCCGCAAAACCCAGAGCGACCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGAATGTTGCTGTACAAACCTAACTCATGATCCATTCCCATTCCCGTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATTCCGTGTTGTAAATTTGTCGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATCTGGCAGCCGATAGGCTGTTGGTGTGACATTGTTGTTGATGTATGGCGGCGTTCGCAGATCCTATGGTATTGTATTTAAGCATCAACTTGTTATTGTTGAAAAAAA]
[+] EMBL AK058768             [                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTA TTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATTCCGTGTTGTAAATTTGTCGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATCTGGCAGCCGATAGGCTGTTGGTGTGACATTGTTGTTGATGTATGGCGGCGTTCGCAGATCCTATGGTATTGTATTTAAGCATCAACTT                 ]


>consensus_12645#1 ANCAAGAAGAAGCTCTTGAAACCAACTAAGGGAAGATCTGGTTATTAGNGCAAAAACCCC TGCCAAGCTTCTATCCAAGAGGNTCCCCCCACCTAAGGTTGAACTTAAGAAGGTGCCTCC AACTCGTGCCAAATCACCAAAATTGACACGGAGAAAGAGCTGCAGCGATACCCCTCATAC ACCAGAGGGTAAAAATGGAAGTGCAGCATGTTGCCGGTTACATCGTCACAGTATTGGGAA CTCCAAAGAAGTTAACAGCAGGACCCAATGTTCTCCGAAGAGTGCTCCAAAGACTGGAGT AGCCGCAAAACCCAGAGCGACCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGC GAATGTTGCTGTACAAACCTAACTCATGATCCATTCCCATTCCCGTGCAATTTTTCGATT TAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGC TGGATTATTTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATT CCGTGTTGTAAATTTGTCGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACT AATCTGGCAGCCGATAGGCTGTTGGTGTGACATTGTTGTTGATGTATGGCGGCGTTCGCA GATCCTATGGTATTGTATTTAAGCATCAACTTGTTATTGTTGAAAAAAA



consensusID : consensus_12645#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [CATACCAGATTTTGCTCTTGTTCAGCAAATTAGTTTGCCTTTAATCATGAAATGTCCATCTTGATTTGTTTTGGAAAAACTGATGGTCAGAAATCAGTTAGTGTAACTTGACTTGTGGAGGAAACAAGTATCATATGTAGGTATCATCCCTTTACAAGACACCGACAGCTGACAGCCCAAGTTTTTTCTCTCTCTCTAATAGACAGCCCTAATGATATTTCTTACCATGATCAGGGTAGCCCTACAGAGTATTTGACATTGATTATGGCCTGTTACCTGTTATTAGACACCACATGTATAATTTGGATTCACTGAATGGTTTGTGCTACGTCTTGTTACTGATGACTGTTAATCATTATGTTGCTTTTTCTACACTGTTAGAAATTTTATGACATGGCAGTTAGCGTAGTAGACAAGTTGGATCAATTTATTAATTTAACTTTGCATTAGCAGGGTCATTTTCCCTTTTGCTAATTATTGTTGCCATACCTTCTCACTGTCCAAGTATCAACTTTTATAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCA]

[+] EMBL CF306101             [CATACCAGATTTTGCTCTTGTTCAGCAAATTAGTTTGCCTTTAATCATGAAATGTCCATCTTGATTTGTTTTGGAAAAACTGATGGTCAGAAATCAGTTAGTGTAACTTGACTTGTGGAGGAAACAAGTATCATATGTAGGTATCATCCCTTTACAAGACACCGACAGCTGACAGCCCAAGTTTTTTCTCTCTCTCTAATAGACAGCCCTAATGATATTTCTTACCATGATCAGGGTAGCCCTACAGAGTATTTGACATTGATTATGGCCTGTTACCTGTTATTAGACACCACATGTATAATTTGGATTCACTGAATGGTTTGTGCTACGTCTTGTTACTGATGACTGTTAATCATTATGTTGCTTTTTCTACACTGTTAGAAATTTTATGACATGGCAGTTAGCGTAGTAGACAAGTTGGATCAATTTATTAATTTAACTTTGCATTAGCAGGGTCATTTTCCCTTTTGCTAATTATTGTTGCCATACCTTCTCACTGTCCAAGTATCAACTTTTATAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCA]


>consensus_12645#2 CATACCAGATTTTGCTCTTGTTCAGCAAATTAGTTTGCCTTTAATCATGAAATGTCCATC TTGATTTGTTTTGGAAAAACTGATGGTCAGAAATCAGTTAGTGTAACTTGACTTGTGGAG GAAACAAGTATCATATGTAGGTATCATCCCTTTACAAGACACCGACAGCTGACAGCCCAA GTTTTTTCTCTCTCTCTAATAGACAGCCCTAATGATATTTCTTACCATGATCAGGGTAGC CCTACAGAGTATTTGACATTGATTATGGCCTGTTACCTGTTATTAGACACCACATGTATA ATTTGGATTCACTGAATGGTTTGTGCTACGTCTTGTTACTGATGACTGTTAATCATTATG TTGCTTTTTCTACACTGTTAGAAATTTTATGACATGGCAGTTAGCGTAGTAGACAAGTTG GATCAATTTATTAATTTAACTTTGCATTAGCAGGGTCATTTTCCCTTTTGCTAATTATTG TTGCCATACCTTCTCACTGTCCAAGTATCAACTTTTATAGGAAGAGCAAGAAGAAGCTCT GAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCA



consensusID : consensus_12645#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [TGGCCCCTCCACTCCAAAGCGCTATCCCTCCCCCGACTCGCCACAAGCCTTCTCTTCCCAGCTCTCCAATACACCATGGTATAGCTGAACATGAAGAGTCAGACCGCACTGTTCCTCAGCCATTTGCTCCTGCAACTGAAAGGGAGGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGTGAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCAGTGACACCCAGGAAGCCTCTGCAAGCTGACAGTACTTCCCATAGACACGAAGATGATTCATATTCGGTTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAGTTTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATNCAGAGGG]

[+] EMBL CB664365             [TGGCCCCTCCACTCCAAAGCGCTATCCCTCCCCCGACTCGCCACAAGCCTTCTCTTCCCAGCTCTCCAATACACCATGGTATAGCTGAACATGAAGAGTCAGACCGCACTGTTCCTCAGCCATTTGCTCCTGCAACTGAAAGGGAGGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGTGAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCAGTGACACCCAGGAAGCCTCTGCAAGCTGACAGTACTTCCCATAGACACGAAGATGATTCATATTCGGTTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGAGGGGAGAGTTTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGGCAAGAAAAAAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATCTGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATNCAGAGGG]


>consensus_12645#3 TGGCCCCTCCACTCCAAAGCGCTATCCCTCCCCCGACTCGCCACAAGCCTTCTCTTCCCA GCTCTCCAATACACCATGGTATAGCTGAACATGAAGAGTCAGACCGCACTGTTCCTCAGC CATTTGCTCCTGCAACTGAAAGGGAGGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTC ATCCCACCAGCAACGGTGAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGG CGAAGAAGAGTCCATCAGTGACACCCAGGAAGCCTCTGCAAGCTGACAGTACTTCCCATA GACACGAAGATGATTCATATTCGGTTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAA TTAAGAAGACAACAGTTCCTGTCGCACCTACTTTTATATGTGGTAATCGTCTTGAGAAGA GGGGAGAGTTTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAG AAGCTGAGGCAAGAAAAAAGGAAGAGCAAGAAGAAGCTCTGAAACAACTAAGGAAGAATC TGGTTATTAGAGCAAAACCCATGCCAAGCTTCTATNCAGAGGG



consensusID : consensus_12645#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 209
fasta sequence
                              [GTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATTCCGTGTTGTAAATTTGTCGAGGTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAGA]

[+] EMBL CA757695             [GTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATTCCGTGTTGTAAATTTGTCGAGGTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAGA]
[+] EMBL CA757696             [GTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGTGGTATTCCGTGTTGTAAATTTGTCGAGGTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGA]


>consensus_12645#4 GTGCAATTTTTCGATTTAATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACA ACAGTGTGTTTGTTGCTGGATTATTTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACA GAGACCATGTGGTATTCCGTGTTGTAAATTTGTCGAGGTTTTGTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAACCTCGAGA



consensusID : consensus_12645#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence
                              [GCATGTATTTATACCTTTGANNNANNNNNGTAGTCCAAGCGGCAAAGGGGTTGTAGAAACGTCCACGGATGATGAATCAGATTGTGTGGTTATATGCCCCCCAAATGGGAAAGCTGGTCATACAGAAGCTATGAGTGGTAGGTAT]

[+] EMBL D43558               [GCATGTATTTATACCTTTGANNNANNNNNGTAGTCCAAGCGGCAAAGGGGTTGTAGAAACGTCCACGGATGATGAATCAGATTGTGTGGTTATATGCCCCCCAAATGGGAAAGCTGGTCATACAGAAGCTATGAGTGGTAGGTAT]


>consensus_12645#5 GCATGTATTTATACCTTTGANNNANNNNNGTAGTCCAAGCGGCAAAGGGGTTGTAGAAAC GTCCACGGATGATGAATCAGATTGTGTGGTTATATGCCCCCCAAATGGGAAAGCTGGTCA TACAGAAGCTATGAGTGGTAGGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12645#0      GCGGCGACGGCGGAGGATAACGGAGGGGGAGGGGGAGGGGACGCCGGGGCGGCGGCGAGG 60
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      CGGCGGTGGGATCTGCCCGAGAAGGCGGCCGACAGCACTCCAAGCGGCAAAGGGGTTGTA 120
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      GAAATGTCCACGGATGATGAATCAGATTGTGTGGTTATATGTCCCCCAAATGGGAAAGCT 180
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      -----------------------------------------------------ANCAAGA 7
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      GGTCATACAGAAGTTATGAGTGGCAGGCATGATGAAGATTCTTCAAGAGGGCAAGAAACC 240
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      AGAAGCTCTTGAAACCAACTAAGGGAAGATCTGGTTATTAGNGCAAAAACCCCTGCCAAG 67
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      CCTTCTACTATAGACTCACATATGAATGGGAATGTCCAGGATGGAGTGCCTGCAGATCAA 300
consensus_12645#3      -------------------------------------------TGGCCCCTCCACTCCAA 17
consensus_12645#1      CTTCTATCCAAGAGGNTCCCCCCACCTAAGGTTGAACTTAAGAAGGTGCCTCCAACTCGT 127
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ---------------------CATACCAGATTTTGCTCTTGTTCAGCAAATTAGTTTGCC 39
                                                                                   

consensus_12645#0      GATGTGCTGAAGCTGGTTGATCAGCAGAAGTCTTCTCTTCCCAGTTCACCAATAAACCAT 360
consensus_12645#3      AGCGCTATCCCTCCCCCGACTCGCCACAAGCCTTCTCTTCCCAGCTCTCCAATACACCAT 77
consensus_12645#1      GCCAAATCACCAAAATTGACACGGAGAAAGAGCTGCAGCGATACCCCTCATACACCAGAG 187
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      TTTAATCATGAAATGTCCATCTTGATTTGTTTTGGAAAAACTGATGGTCAGAAATCAGTT 99
                                                                                   

consensus_12645#0      GGTATAGCTGAACAGGAAGAGTCAAACCACACTGTTCCTCAGCCATTTGCTCCTGCAACT 420
consensus_12645#3      GGTATAGCTGAACATGAAGAGTCAGACCGCACTGTTCCTCAGCCATTTGCTCCTGCAACT 137
consensus_12645#1      GGTAAAAATGGAAGTGCAGCATGTTGCCGGTTACATCGTCA-----CAGTATTGGGAACT 242
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      AGTGTAACTTGACTTGTGGAGGAAACAAGTATCATATGTAGGTATCATCCCTTTACAAGA 159
                                                                                   

consensus_12645#0      GAAAGGGAGGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGT 480
consensus_12645#3      GAAAGGGAGGATTCTGGAGAAGGAGATTGTACTCCAGTGCCTCATCCCACCAGCAACGGT 197
consensus_12645#1      CCAAAGAAGTTAACAGCAGGACCCAATGTTCTCCGAAGAGTGCTCCAAAGACTGGAGTAG 302
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      CACCGACAGCTGACAGCCCAAGTTTTTTCTCTCTCTCTAATAGACAGCCCTAATGATATT 219
                                                                                   

consensus_12645#0      GAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCA 540
consensus_12645#3      GAAAAACTCTCTGATAAAAGTAGCACCTCGCTGGCAAGTATGGCGAAGAAGAGTCCATCA 257
consensus_12645#1      CCGCAAAACCCAGAGCGACCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGA 362
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      TCTTACCATGATCAGGGTAGCCCTACAGAGTATTTGACATTGATTATGGCCTGTTACCTG 279
                                                                                   

consensus_12645#0      GTGACACCCAGGAAGCCTCTG-CAAGCTGACAGTACTTCCCATAGTCACGAAGATGATTC 599
consensus_12645#3      GTGACACCCAGGAAGCCTCTG-CAAGCTGACAGTACTTCCCATAGACACGAAGATGATTC 316
consensus_12645#1      ATGTTGCTGTACAAACCTAAC-TCATGATCCATTCCCATTCCCGTGCAATTTTTCGATTT 421
consensus_12645#4      -------------------------------------------GTGCAATTTTTCGATTT 17
consensus_12645#5      -------------------------------------------------------GCATG 5
consensus_12645#2      TTATTAGACACCACATGTATAATTTGGATTCACTGAATGGTTTGTGCTACGTCTTGTTAC 339
                                                                              *    

consensus_12645#0      ATATTCGG--TTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACA 657
consensus_12645#3      ATATTCGG--TTACTTCAACTGTAACTTCAGCAAGGACTGGAAAAATTAAGAAGACAACA 374
consensus_12645#1      AATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGT------TT 475
consensus_12645#4      AATTTATACCTCACATCGCCGATGACGGCATCATGTCCCGACAACAGTGTGT------TT 71
consensus_12645#5      TATTTATACCTTTGANNNANNNNNGTAGT-CCAAGCGGCAAAGGGGTTGTAGAAACGTCC 64
consensus_12645#2      TGATGACTGTTAATCATTATGTTGCTTTTTCTACACTGTTAGAAATTTTATGACATGGCA 399
                          *      *                     *              *            

consensus_12645#0      GTTCCTGTCGCAC-CTACTTTTATATG----TGGTAATCGTCTTGAGAAGAGGGGAGAGT 712
consensus_12645#3      GTTCCTGTCGCAC-CTACTTTTATATG----TGGTAATCGTCTTGAGAAGAGGGGAGAGT 429
consensus_12645#1      GTTGCTGGATTAT-TTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGT 534
consensus_12645#4      GTTGCTGGATTAT-TTTTTTTTGCATTCTCCTTGTAAGAACCTTGGTACAGAGACCATGT 130
consensus_12645#5      ACGGATGATGAAT-CAGATTGTGTGG-----TTATATGCCCCCCAAATGGGAAAGCTGGT 118
consensus_12645#2      GTTAGCGTAGTAGACAAGTTGGATCAATTTATTAATTTAACTTTGCATTAGCAGGGTCAT 459
                             *    *      **           *                           *

consensus_12645#0      TTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGG 772
consensus_12645#3      TTTACACAAAATTGGAAGAAAAACGCAAGGCCTTGGAAGAGGAGAAACTAGAAGCTGAGG 489
consensus_12645#1      GGTATTCCGTGTTGTAAATTTGTCG--AGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTG 592
consensus_12645#4      GGTATTCCGTGTTGTAAATTTGTCG--AGGTTTTGTAAAAAAAAAAAAAAAAAAAAAAAA 188
consensus_12645#5      CATACA-GAAGCTATGAGT-----GGTAGGTAT--------------------------- 145
consensus_12645#2      TTTCCCTTTTGCTAATTATT-GTTGCCATACCTTCTCACTGTCCAAG-TATCAACTTTTA 517
                         *         *           *  *    *                           

consensus_12645#0      CAAGAAAAAAG--GAAGAGCAAGAAGAAGCTC-TGAAACAACTAAGGAAGAATCTGGTTA 829
consensus_12645#3      CAAGAAAAAAG--GAAGAGCAAGAAGAAGCTC-TGAAACAACTAAGGAAGAATCTGGTTA 546
consensus_12645#1      TAAGAACTAATCTGGCAGCCGATAGGCTGTTGGTGTGACATTGTTGTTGATGTATGGCGG 652
consensus_12645#4      AAAAAAAAAA---AAACCTCGAGA------------------------------------ 209
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      TAGGAAGAG----------CAAGAAGAAGCTC-TGAAACAACTAAGGAAGAATCTGGTTA 566
                                                                                   

consensus_12645#0      TTAGAGCAAAACCCATGCCAAGCTTCTATCAAGAGGGTCCCCCACCTAAGGTTGAACTTA 889
consensus_12645#3      TTAGAGCAAAACCCATGCCAAGCTTCTATNCAGAGGG----------------------- 583
consensus_12645#1      CGTTCGCAGATCCTATGGTATTGTATTTAAGCATCAACTTGTTATTGTTGAAAAAAA--- 709
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      TTAGAGCAAAACCCATGCCA---------------------------------------- 586
                                                                                   

consensus_12645#0      AGAAGGTGCCTCCAACTGGTGCCAAATCACCAAAGACTGGAGTAGCTGCAAAACCCAGAG 949
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      CGCCCAAGGGCGTCATGAAGAATGTGGGAAAGCCAGGTGCTGCGAATGTTCCTGTACAAA 1009
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      CCTAACTCATGATCCATTCCCATTCCCGTGCAATTTTTCGATTTAATTTATACCTCACAT 1069
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      CGCCGATGACGGCATCATGTCCCGACAACAGTGTGTTTGTTGCTGGATTATTTTTTTTGC 1129
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      ATTCTCCTTGTAAGAACCTGGGTACAGAGACCATGTGGTATTCGCGTGTTGTAAATTTGT 1189
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      CGAGGTTTTGTAAGGGGGTAACCGAGTCAGTGCTGTAAGAACTAATTTGGCACCCGATAT 1249
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      GGCTGTTGGTGTGACATTGTTGTTGATGTATGCCGGCGTTCGCAGATCCAAAAAAAAAAA 1309
consensus_12645#3      ------------------------------------------------------------
consensus_12645#1      ------------------------------------------------------------
consensus_12645#4      ------------------------------------------------------------
consensus_12645#5      ------------------------------------------------------------
consensus_12645#2      ------------------------------------------------------------
                                                                                   

consensus_12645#0      GACA 1313
consensus_12645#3      ----
consensus_12645#1      ----
consensus_12645#4      ----
consensus_12645#5      ----
consensus_12645#2      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)