These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2144 fasta sequence [CTGCGGCAAGCGCTTTTTTGACCGCTTCTGCCGTCTCCCTCCTCACACGGCACCCGGCTCGCGTCTCTCCTCCCCCCTACTACTCTGATCCACCGGGTAGTACTAGACGCGCTACTACTGCCGCTGTACTGCTCTGCCACCACTTCTCCACTCCACTCCACTCTCCTCTACTACCACCGCCGCTCTCGTCTCGTCTCGTCTCGACTCGACTCGCATTGCGCCTGTGCTGTGCTGTGGTGGTGGCCGCGCGGGGGGCGAGATGGCCGGAGGAGGTGGGGGAGGGGGAGGGGCGGCGCCGGCGCCGAAGCACGACGAGCTGACGCCGCACCCCGTCAAGGACCAGCTCCCCGGCGTCTCCTACTGCATCACCAGCCCTCCTCCGTGGCCTGAGGCCATTCTTCTTGGTTTCCAACATTATCTGGTTATGCTGGGAACTACAGTTATCATACCAACTGCACTCGTTCCGCAGATGGGAGGAAACAATGAGGACAAGGCTGTTGTTATCCAAACATTGCTGTTTGTGGCTGGGATTAACACCCTTTTGCAGAGTTTCTTTGGAACCAGATTACCTGCGGTGATTGGTGGATCATACACATTTGTTGTACCAACCATCTCAATCATCCTTGCTGGTCGTTATGCCAACGAACCAAATCCACACACAAAATTCCTCCGAATCATGCGTGGAACACAAGGTGCATTGATCGTGGCTTCTGCTCTACAAATCATATTTGGTTTCAGTGGCCTTTGGCGTAATGTTGCAAGGTATCTGAGTCCATTGTCAGCTGCTCCACTGGTGATGCTAGTCGGCTTTGGACTTTATGAGCTTGGTTTTCCCTCGGTTGCCAAGTGTGTTGAGATTGGTCTTCCAGAACTTATCCTCCTGGTGATCTTCGCAATGTACCTGCCTCATGCTATACACATGATGAAGTCTATCTTCGACCGTTTTGCTGTTCTGTTCACTATTCCTATAGTGTGGCTCTATGCATATCTGCTCACAGTTGGAGGCGCGTACAGGAATGCACCACCAAAGACCCAGTTTCATTGCCGAACTGACCGTTCTGGAATAATTGGTGGTGCTCCTTGGATAAGAGTTCCCTATCCCTTTCAATGGGGTGCTCCAACTTTTGATGCTGGTGAAGCTTTTGCAATGATGGCTGCTTCATTTGTTGCTCTGGTGGAGTCTACTGGTGCTTTCATTGCTGTTTCAAGGTATGCTAGTGCCACACCTCTCCCACCCTCTGTACTTAGCCGTGGAATTGGTTGGCAGGGCATTGGCATTTTGTTGGATGGGCTATTTGGGACTGGAAATGGTTCTTCTGTATCAGTTGAAAATGCTGGATTGCTAGCTTTGACACGTGTTGGTAGCCGAAGAGTGGTGCAGATATCAGCTGGTTTCATGATATTCTTCTCTATTCTGGGAAAATTTGGAGCTGTCTTTGCATCAATACCTCCGCCGATCTTTGCAGCTCTCTATTGTATCTTCTTTGCATATGTCGGTTCTGCTGGGGTTGGTTTCCTTCAGTTCTGCAATCTCAATAGTTTCAGGACCAAGTTCATCCTCGGGTTCTCAGTTTTTATGGGCCTTTCTGTTCCTCAGTACTTCAA-CGAGTACACA-TCTGTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG-GCATGATAGT-TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA-TACAGG-ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT-CTTCCCATCAGTAT-GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT-GTGTACTGTCTGT-CCCTT-ATGAACAGGTT-CCCT-GGAAGTGGCAAACTGTTGGCCT-GAATTCTCT-AGGTATGTGGAAATCGT-AGACCTTTAAACAAAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA-CGGATGTATATTTTAACCTATCTGGGGGCAATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAAAAGCTCTTGATTCTTAAAAAAAAAA] [+] EMBL AK073562 [CTGCGGCAAGCGCTTTTTTGACCGCTTCTGCCGTCTCCCTCCTCACACGGCACCCGGCTCGCGTCTCTCCTCCCCCCTACTACTCTGATCCACCGGGTAGTACTAGACGCGCTACTACTGCCGCTGTACTGCTCTGCCACCACTTCTCCACTCCACTCCACTCTCCTCTACTACCACCGCCGCTCTCGTCTCGTCTCGTCTCGACTCGACTCGCATTGCGCCTGTGCTGTGCTGTGGTGGTGGCCGCGCGGGGGGCGAGATGGCCGGAGGAGGTGGGGGAGGGGGAGGGGCGGCGCCGGCGCCGAAGCACGACGAGCTGACGCCGCACCCCGTCAAGGACCAGCTCCCCGGCGTCTCCTACTGCATCACCAGCCCTCCTCCGTGGCCTGAGGCCATTCTTCTTGGTTTCCAACATTATCTGGTTATGCTGGGAACTACAGTTATCATACCAACTGCACTCGTTCCGCAGATGGGAGGAAACAATGAGGACAAGGCTGTTGTTATCCAAACATTGCTGTTTGTGGCTGGGATTAACACCCTTTTGCAGAGTTTCTTTGGAACCAGATTACCTGCGGTGATTGGTGGATCATACACATTTGTTGTACCAACCATCTCAATCATCCTTGCTGGTCGTTATGCCAACGAACCAAATCCACACACAAAATTCCTCCGAATCATGCGTGGAACACAAGGTGCATTGATCGTGGCTTCTGCTCTACAAATCATATTTGGTTTCAGTGGCCTTTGGCGTAATGTTGCAAGGTATCTGAGTCCATTGTCAGCTGCTCCACTGGTGATGCTAGTCGGCTTTGGACTTTATGAGCTTGGTTTTCCCTCGGTTGCCAAGTGTGTTGAGATTGGTCTTCCAGAACTTATCCTCCTGGTGATCTTCGCAATGTACCTGCCTCATGCTATACACATGATGAAGTCTATCTTCGACCGTTTTGCTGTTCTGTTCACTATTCCTATAGTGTGGCTCTATGCATATCTGCTCACAGTTGGAGGCGCGTACAGGAATGCACCACCAAAGACCCAGTTTCATTGCCGAACTGACCGTTCTGGAATAATTGGTGGTGCTCCTTGGATAAGAGTTCCCTATCCCTTTCAATGGGGTGCTCCAACTTTTGATGCTGGTGAAGCTTTTGCAATGATGGCTGCTTCATTTGTTGCTCTGGTGGAGTCTACTGGTGCTTTCATTGCTGTTTCAAGGTATGCTAGTGCCACACCTCTCCCACCCTCTGTACTTAGCCGTGGAATTGGTTGGCAGGGCATTGGCATTTTGTTGGATGGGCTATTTGGGACTGGAAATGGTTCTTCTGTATCAGTTGAAAATGCTGGATTGCTAGCTTTGACACGTGTTGGTAGCCGAAGAGTGGTGCAGATATCAGCTGGTTTCATGATATTCTTCTCTATTCTGGGAAAATTTGGAGCTGTCTTTGCATCAATACCTCCGCCGATCTTTGCAGCTCTCTATTGTATCTTCTTTGCATATGTCGGTTCTGCTGGGGTTGGTTTCCTTCAGTTCTGCAATCTCAATAGTTTCAGGACCAAGTTCATCCTCGGGTTCTCAGTTTTTATGGGCCTTTCTGTTCCTCAGTACTTCAA CGAGTACACA TCTGTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG GCATGATAGT TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAACAAAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA CGGATGTATATTTTAACCTATCTGGGGGCAATAGTAGGAAATTTTGGCTACTCAT ] [+] EMBL AU092909 [ ACCAAGTTCATCCTCGGGTTCTCAGTTTTTATGGGCCTTTCTGTTCCTCAGTACTTCAA CGAGTACACA TCTGTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG GCATGATAGT TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAACAAAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA CGGATGTATATTTTAACCTATCTGGGGGCAATAGTAGGAAATTTTGGCTAaaaaaa ] [+] EMBL BI806760 [ GCCCTTCTGTTCCTCAGTACTTCAACCGAGTACACATTCTGTTGCTGGTTATGG CC TTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGTTGCATATTTGCTGGACAACACGATTCACAG GCATGATAGT TCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCAAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAAC AAAGGGAATCCTGTGGTATGAACAAAAAAATATTGGTGGAATTATGGCA CGGATGTATATTTTAACCTATCTGGGGGC ATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAAAA ] [+] EMBL BI805186 [ TTCACAGCGCATGATAGTGTCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTCCGATCA TACAGG ACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTT CTTCCCATCAGTAT GAGCATACCGTGGCTAATGCCAGAGTAGGTTACT GTGTACTGTCTGT CCCTT ATGAACAGGTT CCCT GGAAGTGGCAAACTGTTGGCCT GAATTCTCT AGGTATGTGGAAATCGT AGACCTTTAAACCAAAGGGAATCCTGTGGTATGTACCAAAAAATATTGGTGGAATTATGGCACCGGATGTATATTTTAACCTATCTGGGGGCCATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAATGGCTCTTGATTCTTAAAAAAAAAA] [+] EMBL BI806679 [ ATCGAGGACACCANTGGTGGGATAAATNCCGATCATTACAGGTACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTTGCTTCCCATCAGTATGGAGCATACCGTGGCTAATGCAAGAGTAGGTTACTGGTGTACTGTCTGTGCCCTTGATGAACAGGTTGCCCTGGGAAGTGGCAAACTGTTGGCCTGGAATTCTCTGAGGTATGTGGAAATCGTGAGACCTTTAAAC AAAGGGAATCCTGTG ] consensusID : consensus_12646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2127 fasta sequence [GTGCGTGAGTCATCGCGGAGTCGTCAGTGTTTCATCGTGTGCGCCGCGCCGCTGCGTGCAGTGCGTTGCGTTCCTCCACTCCCGCGGCGACCGCTTCAACTCGCGCATCTCGAGGAGGCCGGCTCGGCTGCTGCGCCTCACTCTCACTCTCACTCACACTGCAGTGGTGGTAGTGGTAGGCAATGGCGGCGCCGGCGCCGAAGCAGGAGGAACTGCAGCCGCACGCGGTGAAGGACCAGCTGCCGGCCATCTCCTACTGCCTCACCAGCCCTCCCCCATGGCCGGAGGCCATCCTGCTCGGATTCCAGCACTACCTCGTCATGCTCGGCACCACGGTCATCATCCCCACCGCGCTCGTCCCCCAGATGGGCGGCGGCAATGAGGAGAAGGCGCGGGTGATCCAGACGCTGCTGTTCGTCGCCGGCATCAACACGCTGATCCAGAGCTTCCTCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGTCGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGAGAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCAAATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTCCGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGC-TTGGATTCCCAAGTGTTGCCAAATGTGTGGGGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGTATCTGTTGAAAATGCTGGTTTGCTAGGTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTGCTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTATGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCGTGGGATTCTCCGTGTTTATGGGTTTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCTGTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTGGTATTCTCGTCAAAAGCATTCGTCGGAGGCGCTGTAGCATATTTGTTGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAGTTTTTCTTCCCCCGAGGCTGTAATTTCAGCTGTGATTTTACTATCTTCAGTGTAAGCAGTTAAATCCTTTCAGCTGTGATTTCACTATCTTGCTGATCTTCTCGTGGTAAAAAAAAAAAA] [+] EMBL AK071234 [GTGCGTGAGTCATCGCGGAGTCGTCAGTGTTTCATCGTGTGCGCCGCGCCGCTGCGTGCAGTGCGTTGCGTTCCTCCACTCCCGCGGCGACCGCTTCAACTCGCGCATCTCGAGGAGGCCGGCTCGGCTGCTGCGCCTCACTCTCACTCTCACTCACACTGCAGTGGTGGTAGTGGTAGGCAATGGCGGCGCCGGCGCCGAAGCAGGAGGAACTGCAGCCGCACGCGGTGAAGGACCAGCTGCCGGCCATCTCCTACTGCCTCACCAGCCCTCCCCCATGGCCGGAGGCCATCCTGCTCGGATTCCAGCACTACCTCGTCATGCTCGGCACCACGGTCATCATCCCCACCGCGCTCGTCCCCCAGATGGGCGGCGGCAATGAGGAGAAGGCGCGGGTGATCCAGACGCTGCTGTTCGTCGCCGGCATCAACACGCTGATCCAGAGCTTCCTCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGTCGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGAGAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCAAATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTCCGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGC TTGGATTCCCAAGTGTTGCCAAATGTGTGGGGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGTATCTGTTGAAAATGCTGGTTTGCTAGGTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTGCTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTATGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCGTGGGATTCTCCGTGTTTATGGGTTTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCTGTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTGGTATTCTCGTCAAAAGCATTCGTCGGAGGCGCTGTAGCATATTTGTTGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACT ] [+] EMBL OSR3385A [ TCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGTCGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGAGAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCAAATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTCCGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGCTTTGGATTCCCAAGTGTTGCCAAATGTGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTT ] [+] EMBL AK058223 [ GTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGTATCTGTTGAAAATGCTGGTTTGCTAGGTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTGCTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTATGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCGTGGGATTCTCCGTGTTTATGGG TTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCTGTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTGGTATTCTCGTCAAAAGCATTCGTCGGAGGCGCTGTAGCATATTTGTTGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAGATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAG ] [+] EMBL AU032056 [ TGGACAATACCCTCCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTCAGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAACAAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCATTGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAGTTTTTCTTCCCCCGAGGCTGTAATTTCAGCTGTGATTTTACTATCTTCAGTGTAAGCAGTTAAATCCTTTCAGCTGTGATTTCACTATCTTGCTGATCTTCTCGTGGTAAAAAAAAAAAA] [-] EMBL D42353 [ GTATCAAATTGGGATAGCA TGTAGTACGATTAGTTCTTGGG AAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTAGTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAAGGAGAAATGACTCGGTATTTTTGGGGGTATATTAGTTCGGATTAACAGTTAAATCAACAAACTGAAAATGCCTAGTTTTTC ] consensusID : consensus_12646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [TGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTNATTGGAACAGCTAATGGATCATCTGTTTCTGTTGAAAATGCTTGTTTGCTAGGTTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGAATTCTGCTGGATTTATGATTTTCTTCTTTAATCTTGGGAAATTGAAGCGGTATTTGTTTCAATTCAGCCCCAATAATGGCACTATTTACTGCCTCCTCTTTGCTTATGCCGGATGGCAGGAATGGGTTCCTTAATTTTGAAACCTGAAAGTTTCCAACAAAAATAATTGGGGAATTCTCCGGGTTATTGGTTTGCGGGTTCCACAGATTTAAACAAGTCCACCTTGTGTGCAGGTTTGTGGCCCGTACACACTCACCCCAAAAGGTTAAAGGATTTAACAAAGGTGGTTTTTTGAAAAAAGACATTTTTGGGGAGGCCTTGTACTATTTTTTTTGGGAAATAACCTTCCCAAAGGTTTAAACACTTTCCGCGAAAAGACGGGGGGCACTTTTTTGGGACAAATAAAGGGTTTATAGGAAA] [+] EMBL BE040096 [TGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTACATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTCTGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGCTGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCCATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGCTTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGCTGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGGTTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTNATTGGAACAGCTAATGGATCATCTGTTTCTGTTGAAAATGCTTGTTTGCTAGGTTTTGACACGTGTTGGCAGCAGACGTGTGGTGCAGAATTCTGCTGGATTTATGATTTTCTTCTTTAATCTTGGGAAATTGAAGCGGTATTTGTTTCAATTCAGCCCCAATAATGGCACTATTTACTGCCTCCTCTTTGCTTATGCCGGATGGCAGGAATGGGTTCCTTAATTTTGAAACCTGAAAGTTTCCAACAAAAATAATTGGGGAATTCTCCGGGTTATTGGTTTGCGGGTTCCACAGATTTAAACAAGTCCACCTTGTGTGCAGGTTTGTGGCCCGTACACACTCACCCCAAAAGGTTAAAGGATTTAACAAAGGTGGTTTTTTGAAAAAAGACATTTTTGGGGAGGCCTTGTACTATTTTTTTTGGGAAATAACCTTCCCAAAGGTTTAAACACTTTCCGCGAAAAGACGGGGGGCACTTTTTTGGGACAAATAAAGGGTTTATAGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12646#1 ------------------------------------------------------------ consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 CTGCGGCAAGCGCTTTTTTGACCGCTTCTGCCGTCTCCCTCCTCACACGGCACCCGGCTC 60 consensus_12646#1 ----------------------------------GTGCGTGAGTCATCGCGGAGTCGTCA 26 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 GCGTCTCTCCTCCCCCCTACTACTCTGATCCACCGGGTAGTACTAGACGCGCTACTACTG 120 consensus_12646#1 GTGTTTCATCGTGTGCGCCGCGCCGCTGCG-TGCAGTGCGTTGCGTTCCTCCACTCCCGC 85 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 CCGCTGTACTGCTCTGCCACCACTTCTCCACTCCACTCCACTCTCCTCTACTACCACCGC 180 consensus_12646#1 GGCGACCGCTTCAACTCG-CGCATCTCGAGGAGGCCGGCTCGGCTGCTGCGCCTCACTCT 144 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 CGCTCTCGTCTCGTCTCGTCTCGACTCGACTCGCATTGCGCCTGTGCTGTGCTGTGGTGG 240 consensus_12646#1 CACTCTCACTCACACTGCAGTGGTGGTAGTGGT--------AGGCAATGGCGGCGCCGGC 196 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 TGGCCGCGCGGGGGGCGAGATGGCCGGAGGAGGTGGGGGAGGGGGAGGGGCGGCGCCGGC 300 consensus_12646#1 GCCGAAGCAGGAGGAACTGCAGCCGCACGCGGTGAAGGACCAGCTGCCGGCCATCTCCTA 256 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 GCCGAAGCACGACGAGCTGACGCCGCACCCCGTCAAGGACCAGCTCCCCGGCGTCTCCTA 360 consensus_12646#1 CTGCCTCACCAGCCCTCCCCCATGGCCGGAGGCCATCCTGCTCGGATTCCAGCACTACCT 316 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 CTGCATCACCAGCCCTCCTCCGTGGCCTGAGGCCATTCTTCTTGGTTTCCAACATTATCT 420 consensus_12646#1 CGTCATGCTCGGCACCACGGTCATCATCCCCACCGCGCTCGTCCCCCAGATGGGCGGCGG 376 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 GGTTATGCTGGGAACTACAGTTATCATACCAACTGCACTCGTTCCGCAGATGGGAGGAAA 480 consensus_12646#1 CAATGAGGAGAAGGCGCGGGTGATCCAGACGCTGCTGTTCGTCGCCGGCATCAACACGCT 436 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 CAATGAGGACAAGGCTGTTGTTATCCAAACATTGCTGTTTGTGGCTGGGATTAACACCCT 540 consensus_12646#1 GATCCAGAGCTTCCTCGGCACGCGCCTGCCCGCCGTCATCGGGGGCTCCTACACCTTCGT 496 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 TTTGCAGAGTTTCTTTGGAACCAGATTACCTGCGGTGATTGGTGGATCATACACATTTGT 600 consensus_12646#1 CGCGCCCACCATCTCCATCATCCTCGCCGGCCGCTACAACGGCATTGCCGATCCCCACGA 556 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 TGTACCAACCATCTCAATCATCCTTGCTGGTCGTTATGCCAACGAACCAAATCCACACAC 660 consensus_12646#1 GAAATTCGTGCGCATCATGCGGGGAACGCAGGGCGCACTCATAGTGGCCTCCACGCTCCA 616 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 AAAATTCCTCCGAATCATGCGTGGAACACAAGGTGCATTGATCGTGGCTTCTGCTCTACA 720 consensus_12646#1 AATCATCATGGGGTTCAGTGGGCTCTGGCGGATTGTCGTCAGGCTGCTGAGCCCACTGTC 676 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 AATCATATTTGGTTTCAGTGGCCTTTGGCGTAATGTTGCAAGGTATCTGAGTCCATTGTC 780 consensus_12646#1 CGCAGCACCATTGGTTGCGCTTGTTGGATTTGGGCTCTATGAGCTTGGATTCCCAAGTGT 736 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 AGCTGCTCCACTGGTGATGCTAGTCGGCTTTGGACTTTATGAGCTTGGTTTTCCCTCGGT 840 consensus_12646#1 TGCCAAATGTGTGGGGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTA 796 consensus_12646#2 ---------TGTGGAGATTGGCCTTCCACAAATCATACTGCTGGTGGCTCTTTCCCAGTA 51 consensus_12646#0 TGCCAAGTGTGTTGAGATTGGTCTTCCAGAACTTATCCTCCTGGTGATCTTCGCAATGTA 900 *** * ****** ****** ** * ** ** ****** * * *** consensus_12646#1 CATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTC 856 consensus_12646#2 CATACCTAAGCTGGTGCCTTTGTTGGGGACTGCGTTCGAGCGTTTCGCCATCATAATGTC 111 consensus_12646#0 CCTGCCTCATGCTATACACATGATGAAGTCTATCTTCGACCGTTTTGCTGTTCTGTTCAC 960 * * *** * * * ** ** * ** ***** ***** ** * * * * consensus_12646#1 TGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGC 916 consensus_12646#2 TGTGGCCCTTGTCTGGCTTTACGCCTTCTTCCTGACTGTTGGTGGGGCGTACAAGAATGC 171 consensus_12646#0 TATTCCTATAGTGTGGCTCTATGCATATCTGCTCACAGTTGGAGGCGCGTACAGGAATGC 1020 * * * * ** ***** ** ** * * ** ** ***** ** ******* ****** consensus_12646#1 TGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCC 976 consensus_12646#2 TGCTCCGAAGACACAATTTCACTGTCGAACTGATCGATCTGGGCTTGTAGGGGGTGCTCC 231 consensus_12646#0 ACCACCAAAGACCCAGTTTCATTGCCGAACTGACCGTTCTGGAATAATTGGTGGTGCTCC 1080 * ** ***** ** ***** ** ******** ** ***** * * ** ******** consensus_12646#1 ATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGC 1036 consensus_12646#2 ATGGATAAGTGTACCTTACCCATTCCAGTGGGGAGCACCAACGTTTGATGCTGGTGAAGC 291 consensus_12646#0 TTGGATAAGAGTTCCCTATCCCTTTCAATGGGGTGCTCCAACTTTTGATGCTGGTGAAGC 1140 ******** ** ** ** ** ** ** ***** ** ***** ***************** consensus_12646#1 TTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGC 1096 consensus_12646#2 TTTTGCAATGATGGCAGCTTCTTTTGTTGCTCTTGTGGAGTCTACTGGTGCATTCATTGC 351 consensus_12646#0 TTTTGCAATGATGGCTGCTTCATTTGTTGCTCTGGTGGAGTCTACTGGTGCTTTCATTGC 1200 *************** ***** *********** ***************** ******** consensus_12646#1 TGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGG 1156 consensus_12646#2 TGTCTCACGGTACGCCAGTGCAACACCATGCCCTCCTTCTGTTATGAGTCGCGGCATTGG 411 consensus_12646#0 TGTTTCAAGGTATGCTAGTGCCACACCTCTCCCACCCTCTGTACTTAGCCGTGGAATTGG 1260 *** *** **** ** ***** ***** *** ** ***** * ** ** ** ***** consensus_12646#1 TTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTATTTGGAACAGCTAATGGATCATCTGT 1216 consensus_12646#2 TTGGCAGGGGGTTGGTATTTTGCTGGGTGGCTTNATTGGAACAGCTAATGGATCATCTGT 471 consensus_12646#0 TTGGCAGGGCATTGGCATTTTGTTGGATGGGCTATTTGGGACTGGAAATGGTTCTTCTGT 1320 ********* **** ****** *** *** * **** ** * ***** ** ***** consensus_12646#1 ATCTGTTGAAAATGCTGGTTTGCTAGGTTT-GACACGTGTTGGCAGCAGACGTGTGGTGC 1275 consensus_12646#2 TTCTGTTGAAAATGCTTGTTTGCTAGGTTTTGACACGTGTTGGCAGCAGACGTGTGGTGC 531 consensus_12646#0 ATCAGTTGAAAATGCTGGATTGCTAGCTTT-GACACGTGTTGGTAGCCGAAGAGTGGTGC 1379 ** ************ * ******* *** ************ *** ** * ******* consensus_12646#1 AGATTTCTGCTGGATTTATGATTTTCTTCTCTATTCTTGGGAAATTTGGAGCGGTATTTG 1335 consensus_12646#2 AGAATTCTGCTGGATTTATGATTTTCTTCTTTAATCTTGGGAAATT-GAAGCGGTATTTG 590 consensus_12646#0 AGATATCAGCTGGTTTCATGATATTCTTCTCTATTCTGGGAAAATTTGGAGCTGTCTTTG 1439 *** ** ***** ** ***** ******* ** *** ** ***** * *** ** **** consensus_12646#1 CTTCAATTCCAGGCCCAATAATTGCAGCTATATACTGTCTTCTCTTTGCATATGTCGGTA 1395 consensus_12646#2 TTTCAATTC-AGCCCCAATAATGGCA-CTATTTACTGCCTCCTCTTTGCTTATGCCGG-A 647 consensus_12646#0 CATCAATACCTCCGCCGATCTTTGCAGCTCTCTATTGTATCTTCTTTGCATATGTCGGTT 1499 ***** * ** ** * *** ** * ** ** * ******* **** *** consensus_12646#1 TGGCAGGAGTAGGGTTCCTTCAGTTTTGCAACCTGAACAGCTTCCGAACAAAATTCATCG 1455 consensus_12646#2 TGGCAGGAAT-GGGTTCCTT-AATTTTGAAACCTGAA-AGTTTCC-AACAAAAATAATTG 703 consensus_12646#0 CTGCTGGGGTTGGTTTCCTTCAGTTCTGCAATCTCAATAGTTTCAGGACCAAGTTCATCC 1559 ** ** * ** ****** * ** ** ** ** ** ** *** ** ** * ** consensus_12646#1 TGGGATTCTCCGTGTTTATGGGTTTTGTCGGTTCCACAGTATTTCAACGAGTACACCTCT 1515 consensus_12646#2 GGGAATTCTCCGGGTTATTGG--TTTGCGGGTTCCACAG-ATTTAAACAAGTCCACCTTG 760 consensus_12646#0 TCGGGTTCTCAGTTTTTATGGGCCTT-TCTGTTCCTCAGTACTTCAACGAGTACACATCT 1618 * ***** * ** *** ** ***** *** * ** *** *** *** * consensus_12646#1 GTTGCAGGCTATGGCCCAGTACACACTCACGCAAGATGGTTCAATGATATGATCAATGTG 1575 consensus_12646#2 TGTGCAGGTTTGTGGCCCGTACACACTCACCCCAAAAGGTTAAAGGATTTAACAAAGGTG 820 consensus_12646#0 GTTGCTGGTTATGGTCCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTC 1678 *** ** * * ** ** ** ** *** * * * **** ** ** * ** ** consensus_12646#1 GTATTCTCGTCAAAAGCATTCGTCGG-AGGCGCTGTAGCATATTTGTTGGACAATACCCT 1634 consensus_12646#2 GTTTTTTGAAAAAAGACATTTTTGGGGAGGCCTTGTACTATTTTTTTTGGGAAATAACCT 880 consensus_12646#0 ATATTCTCGTCAAAGGCATTCGTTGC-TGGCTTTGTTGCATATTTGCTGGACAACACGAT 1737 * ** * *** **** * * *** *** ** *** *** ** * * consensus_12646#1 --CCAGAGGCATGACAGCACTGCCAGGAAGGACCGGGGGCACCATTTCTGGGACAGATTC 1692 consensus_12646#2 TCCCAAAGGTTTAAACACTTTCCGCGAAAAGACGGGGGGCACT-TTTTTGGGACAAATAA 939 consensus_12646#0 --TCACAGGCATGATAGTTCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAATTC 1795 ** *** * * * * ** ** * ** *** ** ***** * ** consensus_12646#1 AGGTCGTTCAGGACAGACCCACGCAGCGAGGAGTTCTACTCTCTGCCTTTCAACCTCAAC 1752 consensus_12646#2 AGGGTTTATAGGAAA--------------------------------------------- 954 consensus_12646#0 CGATCATACAGGACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAAC 1855 * * **** consensus_12646#1 AAGTTCTTCCCATCCTTCTGATTTTGCACGCCAGTGTTTTGTATCAAATTGGGATAGCAT 1812 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 AAGTTCTTCCCATCAGTATGA----GCATACC-GTGGCTAATGCAAGAGTAGGTTA-CTG 1909 consensus_12646#1 TGTAGTACGATTAGTTCTTGGGTAAGTAATTCTAGCATTGCCAGATTGTTGTTTCTCCTA 1872 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 TGTACTGTCTGTCCCTTATGAACAGGTT-CCCTGGAAGTGGCAAACTGTTG--------- 1959 consensus_12646#1 GTGTTTTTATACTCCTGAGTTCTGAATCCTGCAGACCCCAGTGTAAAACTATCTGAGGAA 1932 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 --GCCTGAATTCTCTAGGTATGTGGAAATCGTAGACCTTTAAACAAAAGGGAATCCTGTG 2017 consensus_12646#1 GGAGAAATGACTCGGTATTTTTGGGTGTATATTAGTTCGGATTAACAGTTAAATCAACAA 1992 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 GTATGAACAAAAAAATATTGGTGGAATTATG---GCACGGATGTATATTTTAACCTATCT 2074 consensus_12646#1 ACTGAAAATGCCTAGTTTTTCTTCCCCCGAGGCTGTAATTTCAGCTGTGATTTTACTATC 2052 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 GGGGGCAATAGTAGGAAATTTTGGCTACTCATTTGCACATGAAAAAAGCTCTTGATTCTT 2134 consensus_12646#1 TTCAGTGTAAGCAGTTAAATCCTTTCAGCTGTGATTTCACTATCTTGCTGATCTTCTCGT 2112 consensus_12646#2 ------------------------------------------------------------ consensus_12646#0 AAAAAAAAAA-------------------------------------------------- 2144 consensus_12646#1 GGTAAAAAAAAAAAA 2127 consensus_12646#2 --------------- consensus_12646#0 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||