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Oryza sativa
cluster # 12651 cluster # 12651       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12651#0 length = 821 sequences # 8  
consensus_12651#1 length = 774 sequences # 1  
consensus_12651#2 length = 684 sequences # 1  
consensus_12651#3 length = 326 sequences # 1  

consensusID : consensus_12651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 821
fasta sequence
                              [GAGTAGAAAAACTTCACAAAAATCACATTCCAAATCAGAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT-CCT-CGGCTACGCGGCCTT-CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCACAGGTTTCATCTTTGAATGGAATTATTTTGGTTAAAAAAAAAAAAA]

[+] EMBL CF339851             [GAGTAGAAAAACTTCACTAAAATCACATTCCAAATCAGAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT CCT CGGCTACGCGGCCTT CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATA                                                                                                                                                                                                              ]
[+] EMBL CF339092             [GAGTAGAAAAACTTCACAAAAATCACATTCCAAATCAGAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT CCT CGGCTACGCGGCCTT CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATA                                                                                                                                                                                                              ]
[+] EMBL CF340559             [                 AAAAATCACATTCCAAATCAGAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT CCT CGGCTACGCGGCCTT CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATAT                                                                                                                                                                                                             ]
[+] EMBL AK064666             [                          ATTCCAAATCAGAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT CCT CGGCTACGCGGCCTT CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCACAGGTTTCATCTTTGAATGGAATTATTTTGGTTA            ]
[+] EMBL CB666103             [                                                     AACCCACGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT CCT CGGCTACGCGGCCTT CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCACAGGTTTCATCTTTGAATGGGATT                      ]
[+] EMBL CB666105             [                                                     AACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT CCT CGGCTACGCGGCCTT CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTANACAATGGAGATTCACAGGTTTCATCTTTGAATGGAAT                       ]
[-] EMBL CB666106             [                                                            GATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCT CCT CGGCTACGCGGCCTT CCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACCCCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCGCAGGTTTCATCTTTGAATGGAATTATTTTGGT              ]
[+] EMBL C97885               [                                                                                                                                                                                                                                                       CTTCGCCGGNTTCCTCCCTACGG NACGCGGCCTTCCCTCGTCTACTCCGGCTTTCACCATNCGGCGGCCCCGTGGGAACTGCGGTANCATGCTNATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCACAGGTTTCATCTTTGAATGGAATTATTTTGGTTAAAAAAAAAAAAA]


>consensus_12651#0 GAGTAGAAAAACTTCACAAAAATCACATTCCAAATCAGAAACCTCGGACCTCCAACCCAG GATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCG GCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAG ACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGA GGCGCGTCTTCGCCGGGTTCCTCCTCGGCTACGCGGCCTTCCTCGTCTACTCCGGCTTTC ACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCAT CACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAG GATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAG CCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGC TCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGG AGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGT GTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAACTCC CGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCACAGGT TTCATCTTTGAATGGAATTATTTTGGTTAAAAAAAAAAAAA



consensusID : consensus_12651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 774
fasta sequence
                              [TCGGCACGAGGCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCNCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCTCCTCGGCTACGCGGCCTTCCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTGGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCGCAGGTTTCATCTTTGAATGGAATTATTTTGGT]

[-] EMBL CB666104             [TCGGCACGAGGCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCNCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCTCCTCGGCTACGCGGCCTTCCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTGCCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTGGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCGCAGGTTTCATCTTTGAATGGAATTATTTTGGT]


>consensus_12651#1 TCGGCACGAGGCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGG CGACGAGGAGGTGGTGGAAGCNCCGCGGCGGCGGCGGCGGCGACGGCGCGGAAGACGGCG ACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGA AGCAGGCGCAGCAGAGCCGCCGGTGGAGGCGCGTCTTCGCCGGGTTCCTCCTCGGCTACG CGGCCTTCCTCGTCTACTCCGGCTTTCACCATGCGGCGGCCCCGTGGGAACTGCGGTATC ATGCTTATTTCATGGAAGATTTGTCATCACCGATGGTCGTAGTTGCAGATTGGATAGCTG CCCTAGCATGTTTATTCTCAATTAAAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGT ATTCATTCTATGTCAGCATACTAGTAGCCCTCTTCTGGACATACTACCTCTTGAGGTTAC CGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGA GCCTCTATGTGGACCACTCTATGCTGGAGTCAATGCAAGATATCAACACCTTGAGGAGCT ACATGTATAACTACAAGGCCTTGTAGTGTGGAGAATATGGCTAGTTGTATCTATACATGT AATAGGTTGGCACTTTTCATTAACTCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTT ACTGCTAAACAATGGAGATTCGCAGGTTTCATCTTTGAATGGAATTATTTTGGT



consensusID : consensus_12651#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence
                              [GATTAGGTGAACCGCCGACCCAAGGGGAAGATGGTCCGGTTGCTGGAGCAGAAGCAGGCGCAGAAGAACCGCCGGTGGAGGGGGGTGTTCGCCGGGTTCCTCCTCGGCTACGGGGCCTTCCTGGTTTTCTCCGGCTTTCCCCCTTAGGCGGCCCCGTGGGAATTGGGGTATCCGGCTTATTTCATGGAAAATTGGTCATCCCCCATGGTCGTAGTTGCAGATTGGATAACTGCCCTAGCCTGTTTATTTTCAATTTAAGGATTACTTCCCTCCTGGAAAAAGGGGAAGTGGGATTCCTTTTATGTCAGCATACTAGTAGCCCTTTTCTGGTCATGCTCCCTTTTGAGGTTTCCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGACTGTTTTTGCCTTTAGCCTTTATGTGGACCCCTCTCTCCCGGGGTCAATGCCAAATATCAACCCCTTGAGGAGCTGCAGGTATAAGTTCAAGGCCTTGTAGTGTGGGGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCCCTTTTCCTTTTCTCCCGGTATAGGTTAAAGTTTATGTTCTTCTAGTTTTCTGGTAAACCATGGAGATTCCCAGGTTTCATCTTTGAATGGGATTATTTTGGTTAATGTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759837             [GATTAGGTGAACCGCCGACCCAAGGGGAAGATGGTCCGGTTGCTGGAGCAGAAGCAGGCGCAGAAGAACCGCCGGTGGAGGGGGGTGTTCGCCGGGTTCCTCCTCGGCTACGGGGCCTTCCTGGTTTTCTCCGGCTTTCCCCCTTAGGCGGCCCCGTGGGAATTGGGGTATCCGGCTTATTTCATGGAAAATTGGTCATCCCCCATGGTCGTAGTTGCAGATTGGATAACTGCCCTAGCCTGTTTATTTTCAATTTAAGGATTACTTCCCTCCTGGAAAAAGGGGAAGTGGGATTCCTTTTATGTCAGCATACTAGTAGCCCTTTTCTGGTCATGCTCCCTTTTGAGGTTTCCGAGAATTCGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGACTGTTTTTGCCTTTAGCCTTTATGTGGACCCCTCTCTCCCGGGGTCAATGCCAAATATCAACCCCTTGAGGAGCTGCAGGTATAAGTTCAAGGCCTTGTAGTGTGGGGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCCCTTTTCCTTTTCTCCCGGTATAGGTTAAAGTTTATGTTCTTCTAGTTTTCTGGTAAACCATGGAGATTCCCAGGTTTCATCTTTGAATGGGATTATTTTGGTTAATGTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12651#2 GATTAGGTGAACCGCCGACCCAAGGGGAAGATGGTCCGGTTGCTGGAGCAGAAGCAGGCG CAGAAGAACCGCCGGTGGAGGGGGGTGTTCGCCGGGTTCCTCCTCGGCTACGGGGCCTTC CTGGTTTTCTCCGGCTTTCCCCCTTAGGCGGCCCCGTGGGAATTGGGGTATCCGGCTTAT TTCATGGAAAATTGGTCATCCCCCATGGTCGTAGTTGCAGATTGGATAACTGCCCTAGCC TGTTTATTTTCAATTTAAGGATTACTTCCCTCCTGGAAAAAGGGGAAGTGGGATTCCTTT TATGTCAGCATACTAGTAGCCCTTTTCTGGTCATGCTCCCTTTTGAGGTTTCCGAGAATT CGATGGGATGTAGCATGGCTCCCGTTTGGCCCTTTGACTGTTTTTGCCTTTAGCCTTTAT GTGGACCCCTCTCTCCCGGGGTCAATGCCAAATATCAACCCCTTGAGGAGCTGCAGGTAT AAGTTCAAGGCCTTGTAGTGTGGGGAATATGGCTAGTTGTATCTATACATGTAATAGGTT TGCCCTTTTCCTTTTCTCCCGGTATAGGTTAAAGTTTATGTTCTTCTAGTTTTCTGGTAA ACCATGGAGATTCCCAGGTTTCATCTTTGAATGGGATTATTTTGGTTAATGTAGCAAAAA AAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12651#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence
                              [GAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCNCCGCGGCGGCGCGNCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCANAGAGCCGCCGGTGGAGGGTGCGCGCCCACTGCCGATCCCCGATCTCGTTCGGCTTAGGGTTTTGTTTCGTCGATTCGATTCGGTTTGGTGGTCCTNCCTGCTAANGCCCGAACCCGGGCATGGCCTGTTGTTCCTTTGTG]

[+] EMBL OS0071A              [GAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCNCCGCGGCGGCGCGNCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCANAGAGCCGCCGGTGGAGGGTGCGCGCCCACTGCCGATCCCCGATCTCGTTCGGCTTAGGGTTTTGTTTCGTCGATTCGATTCGGTTTGGTGGTCCTNCCTGCTAANGCCCGAACCCGGGCATGGCCTGTTGTTCCTTTGTG]


>consensus_12651#3 GAAACCTCGGACCTCCAACCCAGGATCGGAGCGGATGACGACGACGACGACGGCGGCGAC GAGGAGGTGGTGGAAGCNCCGCGGCGGCGCGNCGGCGACGGCGCGGAAGACGGCGACGAC CTCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAG GCGCANAGAGCCGCCGGTGGAGGGTGCGCGCCCACTGCCGATCCCCGATCTCGTTCGGCT TAGGGTTTTGTTTCGTCGATTCGATTCGGTTTGGTGGTCCTNCCTGCTAANGCCCGAACC CGGGCATGGCCTGTTGTTCCTTTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12651#0      GAGTAGAAAAACTTCACAAAAATCACATTCCAAATCAGAAACCTCGGACCTCCAACCCAG 60
consensus_12651#2      ------------------------------------------------------------
consensus_12651#1      ---------------------------------TCGGCACGAGGCGGACCTCCAACCCAG 27
consensus_12651#3      ------------------------------------------------------------
                                                                                   

consensus_12651#0      GATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCGCCGCG 120
consensus_12651#2      ------------------------------------------------------------
consensus_12651#1      GATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGAAGCNCCGCG 87
consensus_12651#3      ------------------------------------------------------------
                                                                                   

consensus_12651#0      GCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAG 180
consensus_12651#2      -----------------------------------------GATTAGGTGAACCGCCGAC 19
consensus_12651#1      GCGGCGGCGGCGGCGACGGCGCGGAAGACGGCGACGACCTCATCCCGATGGACATCCAAG 147
consensus_12651#3      -----------------------------------------GAAACCTCGGACCTCCAAC 19
                                                                        * **  ** * 

consensus_12651#0      ACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGA 240
consensus_12651#2      CCAAGGGGAAGATGGTCCGGTTGCTGGAGCAGAAGCAGGCGCAGAAGAACCGCCGGTGGA 79
consensus_12651#1      ACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGGCGCAGCAGAGCCGCCGGTGGA 207
consensus_12651#3      CCAGG-----ATCGGAGCGGATGACGACGACGACGACGGCGGCGACGAGGAGGTGGTGGA 74
                        *  *        **  ***  *  *  *  ** *  ****  *  **   *  ******

consensus_12651#0      GGCGCGTCTTCGCCGGGTTCCTCCTCGGCTACGCGGCCTTCCTCGTCTACTCCGGCTTTC 300
consensus_12651#2      GGGGGGTGTTCGCCGGGTTCCTCCTCGGCTACGGGGCCTTCCTGGTTTTCTCCGGCTTTC 139
consensus_12651#1      GGCGCGTCTTCGCCGGGTTCCTCCTCGGCTACGCGGCCTTCCTCGTCTACTCCGGCTTTC 267
consensus_12651#3      AGCN-----CCGC--GGCGGCGCGNCGGCGACGGCGC------GGAAGACGGCGACGACC 121
                        *        ***  **   * *  **** ***  **       *    *  ** *   *

consensus_12651#0      ACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCAT 360
consensus_12651#2      CCCCTTAGGCGGCCCCGTGGGAATTGGGGTATCCGGCTTATTTCATGGAAAATTGGTCAT 199
consensus_12651#1      ACCATGCGGCGGCCCCGTGGGAACTGCGGTATCATGCTTATTTCATGGAAGATTTGTCAT 327
consensus_12651#3      TCATCCCGATGGACATCCAAGACCAGGAGGAGATGGTCCGGTCGCTGGAGCAGAAGCAGG 181
                        *     *  ** *      **   *  * *    *     *   ****  *   *    

consensus_12651#0      CACCGATGGTCGTAGTTGCAGATTGGATA---GCTGCCCTAGCATGTTTATTCTCAATTA 417
consensus_12651#2      CCCCCATGGTCGTAGTTGCAGATTGGATA---ACTGCCCTAGCCTGTTTATTTTCAATTT 256
consensus_12651#1      CACCGATGGTCGTAGTTGCAGATTGGATA---GCTGCCCTAGCATGTTTATTCTCAATTA 384
consensus_12651#3      CGCANAGAGCCGCCGGTGGAGGGTGCGCGCCCACTGCCGATCCCCGATCTCGTTCGGCTT 241
                       * *  *  * **  * ** **  **        *****    *  * *     **   * 

consensus_12651#0      AAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAG 477
consensus_12651#2      AAGGATTACTTCCCTCCTGGAAAAAGGGGAAGTGGGATTCCTTTTATGTCAGCATACTAG 316
consensus_12651#1      AAGGATTACTTCACTCCTGGAAGAAGTGGATGTGGTATTCATTCTATGTCAGCATACTAG 444
consensus_12651#3      AGGGTTTTGTTTCGTC--GATTCGATTCGGTTTGGTGGTCCTNCC-TGCTAANGCCCGAA 298
                       * ** **  **   **  *     *   *   ***   ** *    **  *     * * 

consensus_12651#0      TAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCAT 537
consensus_12651#2      TAGCCCTTTTCTGGTCATGCTCCCTTTTGAGGTTTCCGAGAATTCGATGGGATGTAGCAT 376
consensus_12651#1      TAGCCCTCTTCTGGACATACTACCTCTTGAGGTTACCGAGAATTCGATGGGATGTAGCAT 504
consensus_12651#3      ---CCCGGGCATGGCCTGTTGTTCCTTTGTG----------------------------- 326
                          ***     *** *       *  *** *                             

consensus_12651#0      GGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGC 597
consensus_12651#2      GGCTCCCGTTTGGCCCTTTGACTGTTTTTGCCTTTAGCCTTTATGTGGACCCCTCTCTCC 436
consensus_12651#1      GGCTCCCGTTTGGCCCTTTGATTGCTTCTGCATTGAGCCTCTATGTGGACCACTCTATGC 564
consensus_12651#3      ------------------------------------------------------------
                                                                                   

consensus_12651#0      TGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGT 657
consensus_12651#2      CGGGGTCAATGCCAAATATCAACCCCTTGAGGAGCTGCAGGTATAAGTTCAAGGCCTTGT 496
consensus_12651#1      TGGAGTCAATGCAAGATATCAACACCTTGAGGAGCTACATGTATAACTACAAGGCCTTGT 624
consensus_12651#3      ------------------------------------------------------------
                                                                                   

consensus_12651#0      AGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCACTTTTCATTAAC 717
consensus_12651#2      AGTGTGGGGAATATGGCTAGTTGTATCTATACATGTAATAGGTTTGCCCTTTTCCTTTTC 556
consensus_12651#1      AGTGTGGAGAATATGGCTAGTTGTATCTATACATGTAATAGGTTGGCACTTTTCATTAAC 684
consensus_12651#3      ------------------------------------------------------------
                                                                                   

consensus_12651#0      TCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCACA 777
consensus_12651#2      TCCCGGTATAGGTTAAAGTTTATGTTCTTCTAGTTTTCTGGTAAACCATGGAGATTCCCA 616
consensus_12651#1      TCCCGGTATAGCTTAGAGTTCATCTACTTCTAGTTTACTGCTAAACAATGGAGATTCGCA 744
consensus_12651#3      ------------------------------------------------------------
                                                                                   

consensus_12651#0      GGTTTCATCTTTGAATGGAATTATTTTGGTTAA------AAAAAAAAAAA---------- 821
consensus_12651#2      GGTTTCATCTTTGAATGGGATTATTTTGGTTAATGTAGCAAAAAAAAAAAAAAAAAAAAA 676
consensus_12651#1      GGTTTCATCTTTGAATGGAATTATTTTGGT------------------------------ 774
consensus_12651#3      ------------------------------------------------------------
                                                                                   

consensus_12651#0      --------
consensus_12651#2      AAAAAAAA 684
consensus_12651#1      --------
consensus_12651#3      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)