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Oryza sativa
cluster # 12653 cluster # 12653       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12653#0 length = 813 sequences # 1  
consensus_12653#1 length = 750 sequences # 3  
consensus_12653#2 length = 703 sequences # 1  
consensus_12653#3 length = 618 sequences # 6  

consensusID : consensus_12653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 813
fasta sequence
                              [ACTCACTCGAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTAAGCAAAGCTTGCCGCTCTGAAAAACTGAACTGAAAACCCCATGCTGATAAAGGGAGTAGAGCGACTGAAGGCAATAAATCTCTGAAGAAACTCAAGAACCTGATATTTTCAGATAAAAGGATTGAGGCTGCATATGTGAATCGACCTGTGAAGATTTACTGATGCTGCATGAATGCTAATGACGTGAAGGTTTTGTTTGCTGTTTCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAACCTCT]

[+] EMBL AK063036             [ACTCACTCGAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTAAGCAAAGCTTGCCGCTCTGAAAAACTGAACTGAAAACCCCATGCTGATAAAGGGAGTAGAGCGACTGAAGGCAATAAATCTCTGAAGAAACTCAAGAACCTGATATTTTCAGATAAAAGGATTGAGGCTGCATATGTGAATCGACCTGTGAAGATTTACTGATGCTGCATGAATGCTAATGACGTGAAGGTTTTGTTTGCTGTTTCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAACCTCT]


>consensus_12653#0 ACTCACTCGAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAG CTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAG TTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCG GCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTA AGCAAAGCTTGCCGCTCTGAAAAACTGAACTGAAAACCCCATGCTGATAAAGGGAGTAGA GCGACTGAAGGCAATAAATCTCTGAAGAAACTCAAGAACCTGATATTTTCAGATAAAAGG ATTGAGGCTGCATATGTGAATCGACCTGTGAAGATTTACTGATGCTGCATGAATGCTAAT GACGTGAAGGTTTTGTTTGCTGTTTCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCT GAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCA AGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATC TAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTA GTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAAC CTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGT TCATGATTACCAGTAGTAATTTGATGAACCTCT



consensusID : consensus_12653#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 750
fasta sequence
                              [GAACCCCCAAAGACCCCAGGGAAAAAAAGACGTTTACACCCCGCGGGGCGGCCGCACAAGAACAAGTGGATCCCCGGGCGGCAGGAATCGGCACGAGGCGCAACGAAGGCGACGAGCNCACNNGGTNGCAGTNGCAGTAGTAGCCCNGGCNGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAA-GGACGTCGCTGCAGGTGTAGAT-GAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATG-AGATCAGAT-CAAGAGGCGTAGATCCCTCCGTGT-CAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAACCTCTTCTTCATGCTAAAAAAAAAAAAAAAAAAAAAAATCGAGGGGGGGCCCGGGTCCCCAATCCGCCTATAG]

[+] EMBL CA753568             [GAACCCCCAAAGACCCCAGGGAAAAAAAGACGTTTACACCCCGCGGGGCGGCCGCACAAGAACAAGTGGATCCCCGGGCGGCAGGAATCGGCACGAGGCGCAACGAAGGCGACGAGCNCACNNGGTNGCAGTNGCAGTAGTAGCCCNGGCNGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAA GGACGTCGCTGCAGGTGTAGAT GAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATG AGATCAGAT CAAGAGGCGTAGATCCCTCCGTGT CAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATNTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTNTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCCCTGAGTTCCTCTCTGTTCCAGTGTGTCTCTCTGATGTACTTGTCATCATGCATGGTNCATGATNACCAGTAGTAATTTGATGAACCTC    TC   CTAAAAAAAAAAAAAAAAAAAAAAATCGAGGGGGGGCCCGGGTCCCCAATCCGCCTATAG]
[+] EMBL C99119               [                                                                                                                                                                                                                                                                                          CGGCTACGGACCCGNCGAGGACAAGGGACNTCGCTGCAGGTGTAGATGGACCCCAGC AGTTGNCATCTGAAGAGGTTNCAGTAACCACCGAAGAGGTTGTGATTGTACAGCGCAATGAAGATCAGATCCAAGAGGCGTAGATCCCTCCGTGTCCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAACCTCTTCTTCATGCTAAAAAAAA                                                  ]
[+] EMBL AU223359             [                                                                                                                                                                                                                                                                                                CGGACGCGGCGAGGACAA GGACGTCGCTGCAGGTGTAGGT GAGCCCAGCAAGTTGGCATNTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATG AGATCAGAT CAAGAGGCGTAGATCCCTCCGTGT CAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATNTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTNTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTTTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAACCTCTTNTTCATGCTAAAAAAAAAAAAAAA                                           ]


>consensus_12653#1 GAACCCCCAAAGACCCCAGGGAAAAAAAGACGTTTACACCCCGCGGGGCGGCCGCACAAG AACAAGTGGATCCCCGGGCGGCAGGAATCGGCACGAGGCGCAACGAAGGCGACGAGCNCA CNNGGTNGCAGTNGCAGTAGTAGCCCNGGCNGTGCAGTGCAGTGCAGTGAGCGTTTGAGG AGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGC GCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGA GGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGC AGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGA TCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATG ATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATAT GATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTT CCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACC AGTAGTAATTTGATGAACCTCTTCTTCATGCTAAAAAAAAAAAAAAAAAAAAAAATCGAG GGGGGGCCCGGGTCCCCAATCCGCCTATAG



consensusID : consensus_12653#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [ACTCACTCGAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCATGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTANGTAGCCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGATGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTACAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGCAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTAACAGTAGTAATTTGATGAACCTCTTCTTCATGCTATATCTTTTTCTTTGGATGGCAAGCTACTTTATGCTTCTCAAAGCTCATGTAAATAATGGTTTTCTAAAATATTACACGAGATACCTACG]

[+] EMBL CA764894             [ACTCACTCGAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCATGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTANGTAGCCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGATGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTACAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGCAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTAACAGTAGTAATTTGATGAACCTCTTCTTCATGCTATATCTTTTTCTTTGGATGGCAAGCTACTTTATGCTTCTCAAAGCTCATGTAAATAATGGTTTTCTAAAATATTACACGAGATACCTACG]


>consensus_12653#2 ACTCACTCGAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAG CTCTTGCTGTGCAGTGCATGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTANGTAGCCTG TAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCT TCGGCCTCGTCGAGCGCGTCACCGGCTACGGATGCGGCGAGGACAAGGACGTCGCTGCAG GTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTACAGTAAGCAGCGAAGAGGTTG TGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGCAGATCCCTCCGTGTCAGGCGGGA AACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACT GTGTCCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGT TACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGT TTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTAACAGTAGTAATTTGATGAACC TCTTCTTCATGCTATATCTTTTTCTTTGGATGGCAAGCTACTTTATGCTTCTCAAAGCTC ATGTAAATAATGGTTTTCTAAAATATTACACGAGATACCTACG



consensusID : consensus_12653#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 618
fasta sequence
                              [CGCGGACGCGTGCGCTCNAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAAAAAAAAAAAAAAAAA]

[+] EMBL AU029359             [CGCGGACGCGTGCCCTCNAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCA NTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAAAAAAAAAAAAAAAAA]
[+] EMBL CF325694             [             GCTCGAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTC                                                                                           ]
[+] EMBL C74040               [             ncngNAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCA NTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCANGCGGGAAACAGCCAGGGATCAATNCGGCCCGTATCTAGAGGGGATNATTT ATGGACTG ACAACTNTGT CCCTTGAGTTNTCA                                                                                                                                                                             ]
[+] EMBL AU162209             [                              GAAGGCGACGAGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCA CTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAANGACGTCGCTGCANGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCG AGAAGTTGTGATTGTACANCG                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB967077             [                                        AGCTCACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCCGTGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCCGTAGT                          ]
[+] EMBL OS1321850            [                                            CACTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAGTAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCA NTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTAC GACGCGGCGAGGACAAGGACGTCGCTGCAGGTGTAGGTGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGATTGTACAGCGCAATTAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAAGCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTAATGA                                                                                                                                                                                                           ]


>consensus_12653#3 CGCGGACGCGTGCGCTCNAAGCAGCGCAACGAAGGCGACGAGCTCACTTGGTTGCAGTTG CAGTAGTAGCTCTTGCTGTGCAGTGCAGTGCAGTGAGCGTTTGAGGAGAGGTAGCAGTAG TAGCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGCGGCGCAGCTCAAGGACA TGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGGCGAGGACAAGGACGTCG CTGCAGGTGTAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAG AGGTTGTGATTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAG GCGGGAAACAGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGA ACAACTGTGTCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGC TGTGTTACTACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAG TGTGTTTCTCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGAT GAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12653#1      GAACCCCCAAAGACCCCAGGGAAAAAAAGACGTTTACACCCCGCGGGGCGGCCGCACAAG 60
consensus_12653#3      ------------------------------------------------------------
consensus_12653#2      ------------------------------------------------------------
consensus_12653#0      ------------------------------------------------------------
                                                                                   

consensus_12653#1      AACAAGTGGATCCCCGGGCGGCAGGAATCGGCACGAGGCGCAACGAAGGCGACGAGCNCA 120
consensus_12653#3      ------------CGCGGACGCGTGCGCTCNAAGCA--GCGCAACGAAGGCGACGAGCTCA 46
consensus_12653#2      ---------------------ACTCACTCGAAGCA--GCGCAACGAAGGCGACGAGCTCA 37
consensus_12653#0      ---------------------ACTCACTCGAAGCA--GCGCAACGAAGGCGACGAGCTCA 37
                                                  **    *   ******************** **

consensus_12653#1      CNNGGTNGCAGTNGCAGTAGTAGCCCNGGCNGTGCAGTGCA-GTGCAGTGAGCGTTTGAG 179
consensus_12653#3      CTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCA-GTGCAGTGAGCGTTTGAG 105
consensus_12653#2      CTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCATGTGCAGTGAGCGTTTGAG 97
consensus_12653#0      CTTGGTTGCAGTTGCAGTAGTAGCTCTTGCTGTGCAGTGCA-GTGCAGTGAGCGTTTGAG 96
                       *  *** ***** *********** *  ** ********** ******************

consensus_12653#1      GAGAGGTAGCAGTAG-TAGC-TGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGC 237
consensus_12653#3      GAGAGGTAGCAGTAG-TAGC-TGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGC 163
consensus_12653#2      GAGAGGTAGCAGTANGTAGCCTGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGC 157
consensus_12653#0      GAGAGGTAGCAGTAG-TAGC-TGTAGTTCAGCTTGTGGCAGCTCCCATGGCCAGCTACGC 154
                       **************  **** ***************************************

consensus_12653#1      GGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGG 297
consensus_12653#3      GGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGG 223
consensus_12653#2      GGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGATGCGG 217
consensus_12653#0      GGCGCAGCTCAAGGACATGTTCTTCGGCCTCGTCGAGCGCGTCACCGGCTACGGACGCGG 214
                       ******************************************************* ****

consensus_12653#1      CGAGGACAAGGACGTCGCTGCAGGT----------------------------------- 322
consensus_12653#3      CGAGGACAAGGACGTCGCTGCAGGT----------------------------------- 248
consensus_12653#2      CGAGGACAAGGACGTCGCTGCAGGT----------------------------------- 242
consensus_12653#0      CGAGGACAAGGACGTCGCTGCAGGTAAGCAAAGCTTGCCGCTCTGAAAAACTGAACTGAA 274
                       *************************                                   

consensus_12653#1      ------------------------------------------------------------
consensus_12653#3      ------------------------------------------------------------
consensus_12653#2      ------------------------------------------------------------
consensus_12653#0      AACCCCATGCTGATAAAGGGAGTAGAGCGACTGAAGGCAATAAATCTCTGAAGAAACTCA 334
                                                                                   

consensus_12653#1      ------------------------------------------------------------
consensus_12653#3      ------------------------------------------------------------
consensus_12653#2      ------------------------------------------------------------
consensus_12653#0      AGAACCTGATATTTTCAGATAAAAGGATTGAGGCTGCATATGTGAATCGACCTGTGAAGA 394
                                                                                   

consensus_12653#1      -----------------------------------------------------------G 323
consensus_12653#3      -----------------------------------------------------------G 249
consensus_12653#2      -----------------------------------------------------------G 243
consensus_12653#0      TTTACTGATGCTGCATGAATGCTAATGACGTGAAGGTTTTGTTTGCTGTTTCTGCAGGTG 454
                                                                                  *

consensus_12653#1      TAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGA 383
consensus_12653#3      TAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGA 309
consensus_12653#2      TAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTACAGTAAGCAGCGAAGAGGTTGTGA 303
consensus_12653#0      TAGATGAGCCCAGCAAGTTGGCATCTGAAGAGGTTGCAGTAAGCAGCGAAGAGGTTGTGA 514
                       *********************************** ************************

consensus_12653#1      TTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAAC 443
consensus_12653#3      TTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAAC 369
consensus_12653#2      TTGTACAGCGCAATGAGATCAGATCAAGAGGCGCAGATCCCTCCGTGTCAGGCGGGAAAC 363
consensus_12653#0      TTGTACAGCGCAATGAGATCAGATCAAGAGGCGTAGATCCCTCCGTGTCAGGCGGGAAAC 574
                       ********************************* **************************

consensus_12653#1      AGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTG 503
consensus_12653#3      AGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTG 429
consensus_12653#2      AGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTG 423
consensus_12653#0      AGCCAGGGATCAATGCGGCCGGTATCTAGAGGGGATGATTTGATGAACTGAACAACTGTG 634
                       ************************************************************

consensus_12653#1      TCCCC-TTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTAC 562
consensus_12653#3      TCCCC-TTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTAC 488
consensus_12653#2      TCCCCCTTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTAC 483
consensus_12653#0      TCCCC-TTGAGTTCTCAAGTACTACTAGTAGTTTATATGATTGTGAGCGTGCTGTGTTAC 693
                       ***** ******************************************************

consensus_12653#1      TACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTC 622
consensus_12653#3      TACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTC 548
consensus_12653#2      TACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTC 543
consensus_12653#0      TACTATTGTTTGCTTGTGTATCTCAACCTCACTGAGTTCCTCTCTGTTCCAGTGTGTTTC 753
                       ************************************************************

consensus_12653#1      TCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAACCTCT 682
consensus_12653#3      TCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAA----- 603
consensus_12653#2      TCTGATGTACTTGTCATCATGCATGGTTCATGATTAACAGTAGTAATTTGATGAACCTCT 603
consensus_12653#0      TCTGATGTACTTGTCATCATGCATGGTTCATGATTACCAGTAGTAATTTGATGAACCTCT 813
                       ************************************ ******************     

consensus_12653#1      TCTTCATGCTAAAA----------AAAAAAAAAAAAAAAAAAATCGAGGGGGGGCCCGGG 732
consensus_12653#3      ----------AAAA----------AAAAAAAAAAA------------------------- 618
consensus_12653#2      TCTTCATGCTATATCTTTTTCTTTGGATGGCAAGCTACTTTATGCTTCTCAAAGCTCATG 663
consensus_12653#0      ------------------------------------------------------------
                                                                                   

consensus_12653#1      TCCCCAATCCGCCTATAG---------------------- 750
consensus_12653#3      ----------------------------------------
consensus_12653#2      TAAATAATGGTTTTCTAAAATATTACACGAGATACCTACG 703
consensus_12653#0      ----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)