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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 759 fasta sequence
[CGGACGCGG-AGGCGCTAGGGTTTTGCTGCTCCCACAGGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCT-CAAGA-CAGAGCTGTGCCGTTT--CAGCGGCG-CCAAGATTT-ACCCAGGGAAGGGTAT-CAGATTCATCCGTGCAGACTCCCAGGTGTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCA-CAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGGATATTCACGCCGAGGCAGTCAAGAAGAGGCGCCGCACCACCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAA-GCCAGAGGTTCGTGAT-GCA-GCAAGGGAATCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAG-A-CAAAGGA-CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGTAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGATATTATCTTCTAGAT-CAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAAATTTTGCACCATCAGTTGTCCTGAGTACCATACAAATGGAGAACTTAGTTTGAAGCAAAAAAGGAACNATTTTTATCATTGTTCTATCTG-AAGTTGGTACTTTTGACATGATTCAAAAAA]
[+] EMBL CF298979 [CGGACGCGG AGGCGCTAGGGTTTTGCTGCTCCCACAGGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCT CAAGA CAGAGCTGTGCCGTTT CAGCGGCG CCAAGATTT ACCCAGGGAAGGGTAT CAGATTCATCCGTGCAGACTCCCAGGTGTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCA CAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGGATATTCACGCCGAGGCAGTCAAGAAGAGGCGCCGCACCACCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAA GCCAGAGGTTCGTGAT GCA GCAAGGGAATCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAG A CAAAGGA CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGTAAAGGCAATGC ]
[+] EMBL OSC25151 [ ngnaGCGGNAGGCGCTAGGNTTTTCCTGCTCCCACAGGTAAGGAGGCATTNAAGGTTTGGTGAGGCAGCNAAGATGGTTCT CAAGA CAGACCTGTGCCGTTT CAGCGGCG CCAAGATTT ACCCAGGGAAGGGTAT CANATTCATCCGTGCAGACTCCCAGGTGTTCCTGTTTTCAAACTCG ]
[+] EMBL CA305859 [ CGCTAGGGTTTTGCTGCTCCCACAGGTAAGGAGGCATCGAAGGTTTGGTGAGGCAGCGAAGATGGTTCT CAAGA CAGAGCTGTGCCGTTT CAGCGGCG CCAAGATTT ACCCTGGGAAGGGTAT CAGATTCATCCGTGCAGACTCCCAGGTGTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCA CAACCGTCTGAAGCCAGCCAAGCTTACATGG ]
[+] EMBL AU031656 [ GTTTTGCTGCTCCCACAGGTAAGGAGGCATTGAAGGTTTGGTGAGGCAGCGAAGATGGTTCT CAAGA CAGAGCTGTGCCGTTT CAGCGGCG CCAAGATTT ACCCAGGGAAGGGTAT CAGATTCATCCGTGCAGACTCCCAGGTGTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCA CAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGGATATTCACGCCGAGGCAGTCAAGAAGAGGCGCCGCACCACCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAA GCCAGAGGTTCGTGATGGCA GCAAGGGAATCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAG A CAAAGGA CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGTAAAGGCAATGCTCCCAAagc ]
[+] EMBL C98364 [ TCTCCAAGACCAGAGCTGTGCCGTTTTCCAGCGGCGCCCAAGATTTNCCCCAGGNAAGGGTATCCAGATTCATCCGTGCAGACTCCCAGGTGTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCACCAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGGATATTCACGCCGAGGNNGTCAAGAAGAGGCGCCGCACCACCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAA GCCAGAGGTTCGTGAT GCA GCAAGGGAATCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAG A CAAAGGA CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGTAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGATATTATCTTCTAGAT CAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAAATTTTGCACCATCAGTTGTCCTGAGTACCATACAAATGGAGAACTTAGTTTGAAGCATTTTTGGAGCNATTTTTATCATTGTTCTATCTG AAGTTGGTACTTTTGACATGATTCAAAAAA]
[+] EMBL BI806496 [ CAGGGAA GGTAT CAGATTCATCCG GCAGACTCCCAGGTGTTCC GTTTTCAAACTCGAAGTGCAAGCGCTACTTCCA CAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGAAGGATATTCACGCCGAGGCAGTCAAGAAGAGGCGCCGCACCACCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAA GCCAGAGGTTCGTGAT GCA GCAAGGGAATCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAG A C AAGGA CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGTAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGATATTATCTTCTAGAT CAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAAATTTTGCACCATCAGTTGTCCTGAGTACCATACAAATGGAGAACTTAGTTTGAAGCAAAAAAaaaa ]
[+] EMBL BI803695 [ GTCTGAA CCA CCAAGCTTACATGCACA CCATGTACAGAAA CAGCACAAGAAGGATATTCAC CCGA GCAGTCAAGAAGAGGC CCGCACCACCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAA GCCAGAGGTTCGTGAT GCA GCAAGGGAAGCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAG A C AAGGA CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGGAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCCAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTG ATCTTCTAGAT CAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAATTTTTGCACCATCAGTTGTCCTGAGTACCATAC AATGGAGAACTTAGTTTGAAAAAAAAAA ]
[+] EMBL BI803498 [ GATATTCAC CCGAGCCAGTCAAGAAGAGGC CCGCACCACCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAA CCAGAGGTTCGTGAT GCA GCAAGGGAAGCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAG A CCAAGGA CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGGAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCCAAGCTCGGTGGTGGTGGTGGGAA CGGTAGATGCTCCCATTTCCAGAGCTG ATCTTCTAGATCCAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAATTTTTGCACCATCAGTTGTCCTGAGTACCATACAAATGGAGAACTTAGTTTGAAGCCAAAAAaaaaa ]
[+] EMBL BI801878 [ CCGGTCTATA TTGGTGCTACCCTGGAAGTCATCCAGAAGAAGAGAGCTGAGAACGCCAGA GTTCGTGAT CCA GCAAGGGAACCCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAGCA CAAAGGACCGAGAAGAAAGCGAAGAAGCCAGAGGTGCCAAAATCGCAGAAGGCTTCTGGGAAAGCCAATGCTCCCAAGCCTGGGAAAGGCCCAAAGCTCGGT GT GTGGTGGGAACCGGTAGATGCTCCCATTTCCAGAGCTG ATCTTCTAGAT CAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAATTTTTGCACCATCAGTTGTCCTGAGTACCATACAAATGGAGAACTTAGTTTGAAGCATTTTTGG ACCATTTTTATCATTGTTCTATCTGCAAGTTGGTACTTTTGACATGATTCAAAAA ]
[+] EMBL AU031657 [ CAGAGGTTCGTGAT GCANCCAAGGGAATCCGCTCTTCGTGAGATCAAGGAGCNCATCAAGAAG ACCAAAGGA CGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAATCGCAGAAGGCTTCTGGTAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGATATTATCTTCTAGAT CAAAAATCTAATGTTATTTATCCAGACCCTTTTTTGGAAGAAAATTTTGCACCANCAGTTGTCCTGAGTACCATACAAATGGAGAACTTAGTTTGAAGCAAAAA ]
consensusID : consensus_12665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[TGACACCATGTACAGAAAGCAGCACAAGAAGGATATTCACCCGAGCAGTCAAGAAGAGGCCCGCACCATCCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAAGCCAGAGGTTCGTGATCAGCAAGGGAACCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAGACAAGGACGAGAAGAAAGCGAAGAAGCAGAGGTGCAAAATCCAGAAGGCTTCTGGGAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGATCTTCTAGATCAAAATCTAATGGTTATTTATCCAGACCCTTTTTTGGAAGAAATTTTTGCACCATCAGTTGTCCTGAGTACCATACAATGGAGAACTTAGTTTGAACATTTTTGGACCCAAAAAAAAAA]
[+] EMBL BI800914 [TGACACCATGTACAGAAAGCAGCACAAGAAGGATATTCACCCGAGCAGTCAAGAAGAGGCCCGCACCATCCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGAAGAGAGCTGAGAAGCCAGAGGTTCGTGATCAGCAAGGGAACCGCTCTTCGTGAGATCAAGGAGCGCATCAAGAAGACAAGGACGAGAAGAAAGCGAAGAAGCAGAGGTGCAAAATCCAGAAGGCTTCTGGGAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAGCTCGGTGGTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGATCTTCTAGATCAAAATCTAATGGTTATTTATCCAGACCCTTTTTTGGAAGAAATTTTTGCACCATCAGTTGTCCTGAGTACCATACAATGGAGAACTTAGTTTGAACATTTTTGGACCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12665#0 CGGACGCGGAGGCGCTAGGGTTTTGCTGCTCCCACAGGTAAGGAGGCATTGAAGGTTTGG 60
consensus_12665#1 ------------------------------------------------------------
consensus_12665#0 TGAGGCAGCGAAGATGGTTCTCAAGACAGAGCTGTGCCGTTTCAGCGGCGCCAAGATTTA 120
consensus_12665#1 ------------------------------------------------------------
consensus_12665#0 CCCAGGGAAGGGTATCAGATTCATCCGTGCAGACTCCCAGGTGTTCCTGTTTTCAAACTC 180
consensus_12665#1 ------------------------------------------------------------
consensus_12665#0 GAAGTGCAAGCGCTACTTCCACAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCAT 240
consensus_12665#1 --------------------------------------------------TGACA-CCAT 9
**** ****
consensus_12665#0 GTACAGAAAGCAGCACAAGAAGGATATTCACGCCGAGGCAGTCAAGAAGAGGCGCCGCAC 300
consensus_12665#1 GTACAGAAAGCAGCACAAGAAGGATATTCAC-CCGAG-CAGTCAAGAAGAGGC-CCGCAC 66
******************************* ***** *************** ******
consensus_12665#0 CA-CCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGA 359
consensus_12665#1 CATCCAAGAAACCGTACTCCCGGTCTATAGTTGGTGCTACCCTTGAAGTCATCCAGAAGA 126
** *********************************************************
consensus_12665#0 AGAGAGCTGAGAAGCCAGAGGTTCGTGATGCAGCAAGGGAATCCGCTCTTCGTGAGATCA 419
consensus_12665#1 AGAGAGCTGAGAAGCCAGAGGTTCGTGAT-CAGCAAGGGAA-CCGCTCTTCGTGAGATCA 184
***************************** *********** ******************
consensus_12665#0 AGGAGCGCATCAAGAAGACAAAGGACGAGAAGAAAGCGAAGAAGGCAGAGGTGGCAAAAT 479
consensus_12665#1 AGGAGCGCATCAAGAAGACAA-GGACGAGAAGAAAGCGAAGAAG-CAGAGGTG-CAAAAT 241
********************* ********************** ******** ******
consensus_12665#0 CGCAGAAGGCTTCTGGTAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAAAGCTCGGTG 539
consensus_12665#1 C-CAGAAGGCTTCTGGGAAAGGCAATGCTCCCAAGCCTGGGAAAGGCCCAA-GCTCGGTG 299
* ************** ********************************** ********
consensus_12665#0 GTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGATATTATCTTCTAGATCAA 599
consensus_12665#1 GTGGTGGTGGGAAGCGGTAGATGCTCCCATTTCCAGAGCTGA-----TCTTCTAGATCAA 354
****************************************** *************
consensus_12665#0 AAATCTAATG-TTATTTATCCAGACCCTTTTTTGGAAGAAAATTTTGCACCATCAGTTGT 658
consensus_12665#1 AA-TCTAATGGTTATTTATCCAGACCCTTTTTTGGAAGAAATTTTTGCACCATCAGTTGT 413
** ******* ****************************** ******************
consensus_12665#0 CCTGAGTACCATACAAATGGAGAACTTAGTTTGAAGCAAAAAAGGAACNATTTTTATCAT 718
consensus_12665#1 CCTGAGTACCATACAA-TGGAGAACTTAGTTTGAA-CATTTTTGGACCCAAAAAAAAAA- 470
**************** ****************** ** *** * * * *
consensus_12665#0 TGTTCTATCTGAAGTTGGTACTTTTGACATGATTCAAAAAA 759
consensus_12665#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||