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Oryza sativa
cluster # 12666 cluster # 12666       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12666#0 length = 1515 sequences # 8  
consensus_12666#1 length = 562 sequences # 2  
consensus_12666#2 length = 342 sequences # 1  

consensusID : consensus_12666#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1515
fasta sequence
                              [GTTCACACTATAAAACACCCCCTCCCCGCGCCGCCGCCGCCGCAGCAGCCGCCACCGCCGCCGGAATCCGAGACCTCTCGCCGTCCCGCCACGCGCGC-GCGCGAGCGAGCAAAGAGAGAGAGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCCGCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCGTGGTCGCGGCGAGGAGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCGCGGTTACAGCGAGTGCGGATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGTTGTTTGAGGCCCTTCGAGAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTTGGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTTCGGGTTC-TTGATACCCCTATTGCT-GAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCAATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTACAATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATCCCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAACGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCTTACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGAACCCTGTGGTGCTGTTCGAGCATGTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATGAGGAATACATTTGCTGCTTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTCACGTACTCTCGCATGAGGTACCATGTGATGCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATAGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAATTCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCCTTACCCATGCATTATTGGTCTCTCTGTTCTTCCTGCTACATTTGGTGCTCCATTTTACGTTCTGTACTATATGTTTG]

[+] EMBL AU184832             [GTTCACACTATAAAACACCCCCTCCCCGCGCCGCCGCCGCCGCAGCAGCCGCCACCGCCGCCGGAATCCGAGACCTCTCGCCGTCCCGCCACGCGCGCTGCGCGAGCGAGCAAAGAGAGAGAGAGAAATGGCCACCGTTGNCGCCGCCTCGCTGCAGTACGCGCTGCACGGNGCCGCCTCCGCCTCCGCCAAGCCCAGATCCGCCGNGCCAGGCAGGAGCtgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK101464             [                                                   CCACCGCCGCCGGAATCCGAGACCTCTCGCCGTCCCGCCACGCGCGC GCGCGAGCGAGCAAAGAGAGAGAGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCCGCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCGTGGTCGCGGCGAGGAGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCGCGGTTACAGCGAGTGCGGATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGTTGTTTGAGGCCCTTCGAGAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTTGGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTTCGGGTTC TTGATACCCCTATTGCT GAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCAATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTACAATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATCCCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAACGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCTTACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGAACCCTGTGGTGCTGTTCGAGCATGTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATGAGGAATACATTTGCTGCTTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTCACGTACTCTCGCATGAGGTACCATGTGATGCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATAGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAATTCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCC                                                                             ]
[+] EMBL AK063753             [                                                    CACCGCCGCCGGAATCCGAGACCTCTCGCCGTCCCGCCACGCGCGC GCGCGAGCGAGCAAAGAGAGAGAGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCCGCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCGTGGTCGCGGCGAGGAGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCGCGGTTACAGCGAGTGCGGATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGTTGTTTGAGGCCCTTCGAGAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTTGGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTTCGGGTTC TTGATACCCCTATTGCT GAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCAATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTACAATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATCCCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAACGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCTTACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGAACCCTGTGGTGCTGTTCGAGCATGTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATGAGGAATACATTTGCTGCTTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTCACGTACTCTCGCATGAGGTACCATGTGATGCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATAGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAATTCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAGGTTATACCCTTACCCATGC                                                                   ]
[+] EMBL CB635149             [                                                                AATCCCATACCTCTCGCCGTCCCGCCACGCGCGC GCGCGAGCGAGCGA  AGAGAGAGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCCGCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCGTGGCCGCGGCGAGGAGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCGCGGTTACAGCGAGTGCGGATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGTTGTTTGAGGCCCTTCGAGAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTTGGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTTCGGGTTC TTGATACCCCTATTGCT GAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCAATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTACAATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATCCCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAACGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCTTACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGACCCCTGTGGTGCTGTTCGAGCATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU068999             [                                                                            CTCGCCGTCCCGCCACGCGCGC GCG AAG AAGCAAAGAGAGANAGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCCGCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCNTGGTCGCGGCGAGGAGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCG GGTTACAGCNAGTTCGGATGCAACGGCGGAATCCAAGTCCGGCGGTCATNAGGTCCTGTTGTTTGAGGCCCTTCGAGAAGCATTNATAGAAGANATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTTGGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTTGCTGANATGTTTTGAGACCTTCGGGTTC TTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSC5721              [                                                                                                                                                                                                                                                                      GGGGCGGTGGTAGCGCGNGCCGGGATTACAGCGNGTNCGGATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTNTTGTTTGAGGCCCTTCGAGAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTTGGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTTCGGGTTCTTTGATACCCCNATTGCTNGANAATTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF326042             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTTCGGGTTC TTGATACCCCTATTGCT GAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCAATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTACAATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATCCCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAACGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCTTACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGAACCCTGTGGTGCTGTTCGAGCACTTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATGAGGAATACATTTGCTGCTTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTCACGTACTCTCGCATGAGGTACCATGTGATGCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB635150             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GATGAGGAATACATTTGCTGCTTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTCACGTACTCTCGCATGAGGTACCATGTGATGCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATAGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAAATCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACAGTAAAGTTATACCCTTACCCATGCATTATTGGTCTCTCTGTTCTTCCTGCTACATTTGGTGCTCCATTTTACGTTCTGTACTATATGTTTG]


>consensus_12666#0 GTTCACACTATAAAACACCCCCTCCCCGCGCCGCCGCCGCCGCAGCAGCCGCCACCGCCG CCGGAATCCGAGACCTCTCGCCGTCCCGCCACGCGCGCGCGCGAGCGAGCAAAGAGAGAG AGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCC GCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCGTGGTCGCGGCGAGG AGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCGCGGTTACAGCGAGTGCG GATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGTTGTTTGAGGCCCTTCGA GAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTT GGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTT CGGGTTCTTGATACCCCTATTGCTGAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCA ATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTAC AATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATC CCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAA CGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCT TACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGAACCCTGTGGTGCTGTTC GAGCATGTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATGAGGAATACATTTGCTGC TTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTCACGTACTCTCGC ATGAGGTACCATGTGATGCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAG GTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATAGGGAACTCCATTAAG AAGACCCACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGGGTGGTATCGGCGCCAGC CTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTG TCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAG CCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAATTCTTAATGACAT TGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAG TGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCCTT ACCCATGCATTATTGGTCTCTCTGTTCTTCCTGCTACATTTGGTGCTCCATTTTACGTTC TGTACTATATGTTTG



consensusID : consensus_12666#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 562
fasta sequence
                              [GGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTTCACGTACTCTCTGCATTGAGGTACCATTGTGATGTCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGA-AACCATTCGATCTGCACACGATATGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGTATGCGAACGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAG-CCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAAATCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCCTTACCCCAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM038719             [GGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTTCACGTACTCTCTGCATTGAGGTACCATTGTGATGTCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGA AACCATTCGATCTGCACACGATATGGGAACTCCATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGTATGCGAACGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAG CCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAAATCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCCTTACCCCAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM421470             [                                                                                                    AAGGGTACGATCCGGAGGTCATTGATATCAGGTCGCTGATANCCATTCGATCTGCACACGATA GGGAACTCCATTAAGAAGACCCCCCGCGTTCTGATTGTGGAGGAGTGTATGCGAACGGGTGGTATCGGCGCCAGCCTGAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGACCTGCCCAAATTGTGCCCGCTNTCGAGCAGATCTGCCAATAATTCAAATCTTAATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCCTTACCCAAAAAAAAAA          ]


>consensus_12666#1 GGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTTCACGTACTCTCTGCATTGAG GTACCATTGTGATGTCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATCCGGAGGTC ATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATATGGGAACTCCATTAAGAA GACCCACCGCGTTCTGATTGTGGAGGAGTGTATGCGAACGGGTGGTATCGGCGCCAGCCT GAGGTCGGCCATCATTGATAACTTCTGGGACTACCTTGATGCCCCCATCATGTGCTTGTC ATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGTCGTGCAGCC TGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAAATCTTAATGACATTG TTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTTGTCACGTAGTG ACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTTATACCCTTAC CCCAAAAAAAAAAAAAAAAAAA



consensusID : consensus_12666#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence
                              [TCGGCCATCATTGATAACTCCTCGGGACTNCCTTGATGCCCCNATNANGTGCTTGTCATCACAGGNTGTACCGACGCCATATGCTGCAACTCTGGAGGANGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAANTCAAATCTTAATGACANTTTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGGTCGNCTNTGTCACGTAGTGACCTCCATTGTGNCGTAGACACTGTATTCTATTTCCCCAACNCTAAAGTTATANCNTTACCCATGNATTATTGGTCTCTCTGTTCTTCCTGCTTAAAAAAAAAA]

[+] EMBL AU032453             [TCGGCCATCATTGATAACTCCTCGGGACTNCCTTGATGCCCCNATNANGTGCTTGTCATCACAGGNTGTACCGACGCCATATGCTGCAACTCTGGAGGANGCAACCGTCGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAANTCAAATCTTAATGACANTTTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGGTCGNCTNTGTCACGTAGTGACCTCCATTGTGNCGTAGACACTGTATTCTATTTCCCCAACNCTAAAGTTATANCNTTACCCATGNATTATTGGTCTCTCTGTTCTTCCTGCTTAAAAAAAAAA]


>consensus_12666#2 TCGGCCATCATTGATAACTCCTCGGGACTNCCTTGATGCCCCNATNANGTGCTTGTCATC ACAGGNTGTACCGACGCCATATGCTGCAACTCTGGAGGANGCAACCGTCGTGCAGCCTGC CCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAANTCAAATCTTAATGACANTTTTG AACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGGTCGNCTNTGTCACGTAGTGAC CTCCATTGTGNCGTAGACACTGTATTCTATTTCCCCAACNCTAAAGTTATANCNTTACCC ATGNATTATTGGTCTCTCTGTTCTTCCTGCTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12666#0      GTTCACACTATAAAACACCCCCTCCCCGCGCCGCCGCCGCCGCAGCAGCCGCCACCGCCG 60
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      CCGGAATCCGAGACCTCTCGCCGTCCCGCCACGCGCGCGCGCGAGCGAGCAAAGAGAGAG 120
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      AGAGAAATGGCCACCGCTGCCGCCGCCTCGCTGCAGTACGCGCTGCACGGCGCCGCCTCC 180
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      GCCTCCGCCAAGCCCAGATCCGCCGCGCCAGGCAGGAGCGTGCGCGTGGTCGCGGCGAGG 240
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      AGGTCGGTGCGGGCGCGCGGAGGGGCGGTGGTAGCGCGCGCCGCGGTTACAGCGAGTGCG 300
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      GATGCGACGGCGGAATCCAAGTCCGGCGGTCATGAGGTCCTGTTGTTTGAGGCCCTTCGA 360
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      GAAGCATTGATAGAAGAGATGAAAGAAGATCCTACAGTTTGTGTATTTGGTGAAGATGTT 420
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      GGTCACTATGGAGGTTCATATAAGGTGACCAAGGGCTTGGCTGAGATGTTTGGAGACCTT 480
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      CGGGTTCTTGATACCCCTATTGCTGAGAATTCTTTCGCTGGCATGGGAGTTGGAGCAGCA 540
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      ATGAAGGGGCTAAGGCCAATTGTTGAAGGCATGAACATGGGTTTCCTTCTCCTTGCTTAC 600
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      AATCAGATCTCAAACAATTGTGGTATGCTTCATTATACCTCAGGTGGCCAGTTCAAGATC 660
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      CCGATTGTGATTCGAGGCCCTGGTGGTGTTGGTCGCCAGCTTGGTGCTGAGCATTCACAA 720
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      CGTCTCGAATCGTACTTCCAGTCCATTCCTGGACTTCAAATGGTTGCTTGCTCTACTCCT 780
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      TACAATGCTAAGGGCCTGATGAAGGCTGCCATAAGGAGTGAGAACCCTGTGGTGCTGTTC 840
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      GAGCATGTCCTTCTGTACAACCTGAAGGAGAAGATCCCTGATGAGGAATACATTTGCTGC 900
consensus_12666#1      ------------------------------------------------------------
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      TTGGAGGAGGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCT-CACGTACTCTC- 958
consensus_12666#1      --------GGCCGAGATGGTACGTCCAGGTGAGCATGTGACCATCCTTCACGTACTCTCT 52
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      GCAT-GAGGTACCAT-GTGATG-CAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATC 1015
consensus_12666#1      GCATTGAGGTACCATTGTGATGTCAGGCAGCCAAGACACTGGTGAACAAAGGGTACGATC 112
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      CGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATA-GGGAACTCC 1074
consensus_12666#1      CGGAGGTCATTGATATCAGGTCGCTGAAACCATTCGATCTGCACACGATATGGGAACTCC 172
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      ATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGCATGCGAACGGGTGGTATCGGC 1134
consensus_12666#1      ATTAAGAAGACCCACCGCGTTCTGATTGTGGAGGAGTGTATGCGAACGGGTGGTATCGGC 232
consensus_12666#2      ------------------------------------------------------------
                                                                                   

consensus_12666#0      GCCAGCCTGAGGTCGGCCATCATTGATAACTTCT-GGGACTACCTTGATGCCCCCATCAT 1193
consensus_12666#1      GCCAGCCTGAGGTCGGCCATCATTGATAACTTCT-GGGACTACCTTGATGCCCCCATCAT 291
consensus_12666#2      ------------TCGGCCATCATTGATAACTCCTCGGGACTNCCTTGATGCCCCNATNAN 48
                                   ******************* ** ****** ************ ** * 

consensus_12666#0      GTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGT 1253
consensus_12666#1      GTGCTTGTCATCACAGGATGTACCGACGCCATATGCTGCAACTCTGGAGGACGCAACCGT 351
consensus_12666#2      GTGCTTGTCATCACAGGNTGTACCGACGCCATATGCTGCAACTCTGGAGGANGCAACCGT 108
                       ***************** ********************************* ********

consensus_12666#0      CGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAATTCTTA 1313
consensus_12666#1      CGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAATTCAAATCTTA 411
consensus_12666#2      CGTGCAGCCTGCCCAAATTGTGGCCGCTGTCGAGCAGATCTGCCAATAANTCAAATCTTA 168
                       ************************************************* **** *****

consensus_12666#0      ATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTT-G 1372
consensus_12666#1      ATGACATTGTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGTTCGTCTT-G 470
consensus_12666#2      ATGACANTTTTGAACATCATGATTTGTGGATTCAGAACCACTGTCCTTTGGTCGNCTNTG 228
                       ****** * ***************************************** *** **  *

consensus_12666#0      TCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTT 1432
consensus_12666#1      TCACGTAGTGACCTCCATTGTGGCGTAGACACTGTATTCTATTTCCCCAACACTAAAGTT 530
consensus_12666#2      TCACGTAGTGACCTCCATTGTGNCGTAGACACTGTATTCTATTTCCCCAACNCTAAAGTT 288
                       ********************** **************************** ********

consensus_12666#0      ATACCCTTACCCATGCATTATTGGTCTCTCTGTTCTTCCTGCTACATTTGGTGCTCCATT 1492
consensus_12666#1      ATACCCTTACCCCAAAAAAAAAAAAAAAAAAA---------------------------- 562
consensus_12666#2      ATANCNTTACCCATGNATTATTGGTCTCTCTGTTCTTCCTGCTTAAAAAAAAAA------ 342
                       *** * ******    *  *                                        

consensus_12666#0      TTACGTTCTGTACTATATGTTTG 1515
consensus_12666#1      -----------------------
consensus_12666#2      -----------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)