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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1181 fasta sequence
[AGATAGGGATAAGGGGAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC-TGAAGAAGGCCA-GGGAGCTCTCCATCCTCTGCGAGG-CCGAC-ATCGGC-ATC-ATCATCTT-CTCCGCCCACGGC-AAGCTCTAC-GACCT--CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG-ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069122 [AGATAGGGATAAGGGGAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGAC ]
[+] EMBL AY115556 [ GGGAGAAGGGGAAGAGGAG GAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACCGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAGAATGGGCTATTCCTTCTAAC CTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAAGGGGGAATATGGGTAATAATGCTTGGGGTGCTGgt ]
[+] EMBL AU095354 [ GAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCANCACCGGAACCATGGAGGAGCTGATCGAGA ]
[+] EMBL AB003326 [ AGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTT ]
[+] EMBL AU065432 [ AGGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCA GTCACCTTCTGCAAGCGCCGTGCCGGCCTGCTTGAAGAAGGCCANGGGAGCTCTTCATCCTCTTCGAGGNCCGACAATCGGCAATCAATAATCTTNTTCCGCCCACGGCAAAGTTNTACGGACCTTNGGCAACCACCGG ACCATGGAGGAGCTta ]
[+] EMBL AU164694 [ GGAGGTGTAGGGAGAAACCGGAGCAACCTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTATCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAAACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGACTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCACCGTCA GTCACCTTCTGCAAGCGNCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTTCGAGG NCGAC ATCGGC ATC ATCATCTT CTTCGNCC ]
[+] EMBL AF141868 [ accaACCGGCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGC TGAAGAAGGCCA GGGAGCTCTCCATCCTCTGCGAGG CCGAC ATCGGC ATC ATCATCTT CTCCGCCCACGGC AAGCTCTAC GACCT CGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGAACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACCGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAGAATGGGCTATTCCTTCTAAC CTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAAGGGGGAATATGGGTAATAATGCTTGGGGTGCTGgt ]
[+] EMBL AU032614 [ ncCAGGCC CTACCT CCGCGACCAGAGANTGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAG AATCATCCTACTGCAGAAGGNCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAACATTC CTCCGCAAAGATGCAGATAATGATCCAAGAGANCCAAGCACTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGACTATTGTTTCCTGGAACGTTTAAAAAAA ]
[-] EMBL CA760365 [ GGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAAACAAGAAATCAATTTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGAACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTTCAACCTTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCCAGCCCTAAAGAGCAAGGAAGGCATGTTGAAAGCTGCTAACGAAATTTTCCAAGAAAAGATAGTAGAACAGAATGGTTTGATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCCTTTTAGTACAATCCCCCTGTTAGAAGAGATCCCTAACCCCCTGGCTATACTGAGTGGCTATTTTACTTGTAGGGGCTTGGAG ATGGGCTATTCCTTCTAACCCTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGGGTAATATGGTTAATAATGCTTTTGGTGCTGTTTGCTTTGCTATTTTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGGGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCCTTTCAAGTAATTGAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU031411 [ nGAATGGTCTGATCGACGTAGGCATGATGGTAGCAGATCNACAGAATGGGCATTTTAGTNCAGTCCCACTGTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTCGGAG ATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACTAGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCTTATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATTGAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_12674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence
[GACAAGTTCCCNCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACNNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU032238 [GACAAGTTCCCNCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGTGCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACNNTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12674#0 AGATAGGGATAAGGGGAAGAGGAGGAAGAAGGAGGAGGTGTAGGGAGAAACCGGAGCAAC 60
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 CTCGAAGCTAGTCCAAACTAGTGGGAGGTTGTCTTTCCGGCAAGCCGGAGCCCGGAGCTA 120
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 TCGATCATCAAGCTTTCTACCCCGACCGACGAGGAAGAAGACGACTGATCAATTGATCAA 180
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 ACCGATCTCTCCATAGCTAGGTAGACAGGAGGAGAGGAGGAAGAAGAGGGGGAGAGGAGA 240
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 CTTATCTTGATCGATGGCGCGAGGCAAGGTGCAGCTCCGTCGCATCGAGAACCCGGTTCA 300
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 CCGTCAGGTCACCTTCTGCAAGCGCCGTGCCGGCCTGCTGAAGAAGGCCAGGGAGCTCTC 360
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 CATCCTCTGCGAGGCCGACATCGGCATCATCATCTTCTCCGCCCACGGCAAGCTCTACGA 420
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 CCTCGCCACCACCGGAACCATGGAGGAGCTGATCGAGAGGTACAAGAGTGCTAGTGGCGA 480
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 ACAGGCCAACGCCTGCGGCGACCAGAGAATGGACCCAAAACAGGAGGCAATGGTGCTCAA 540
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 ACAAGAAATCAATCTACTGCAGAAGGGCCTGAGGTACATCTATGGGAACAGGGCAAATGA 600
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 ACACATGACTGTTGAAGAGCTGAATGCCCTAGAGAGGTACTTAGAGATATGGATGTACAA 660
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 CATTCGCTCCGCAAAGATGCAGATAATGATCCAAGAGATCCAAGCACTAAAGAGCAAGGA 720
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 AGGCATGTTGAAAGCTGCTAACGAAATTCTCCAAGAAAAGATAGTAGAACAGAATGGTCT 780
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 GATCGACGTAGGCATGATGGTAGCAGATCAACAGAATGGGCATTTTAGTACAGTCCCACT 840
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 GTTAGAAGAGATCACTAACCCACTGACTATACTGAGTGGCTATTCTACTTGTAGGGGCTC 900
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 GGAGATGGGCTATTCCTTCTAACACTAATAATGGCCTGGGGGATACTTGTGTTCATTACT 960
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 AGTGTGTAATATGGTTAATAATGCTTGTGTTGCTGTTTGCTTTGCTATTCTGATGTACCT 1020
consensus_12674#1 ------------------------------------------------------------
consensus_12674#0 TATTTAGACAAGTTCCCGCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGT 1080
consensus_12674#1 ------GACAAGTTCCCNCAGGAAGTGTCTTTTAGTATTGTATTTGTCTTGGGCTGTGGT 54
*********** ******************************************
consensus_12674#0 GCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACCATTTCAAGTAATT 1140
consensus_12674#1 GCTTTGTTTTTCCCTAAAGAACTCTTGAGGAGCTCTGTTGTTGAACNNTTTCAAAAAAAA 114
********************************************** ****** **
consensus_12674#0 GAGACTATTGTTTCCTGGAAAAAAAAAAAAAAAAAAAAAAA 1181
consensus_12674#1 AAAA------------AAAAAAAAAAAAAAAAAAAAAAAAA 143
* * ***********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||