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Oryza sativa
cluster # 12695 cluster # 12695       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12695#0 length = 975 sequences # 4  
consensus_12695#1 length = 796 sequences # 4  
consensus_12695#2 length = 626 sequences # 2  
consensus_12695#3 length = 266 sequences # 1  

consensusID : consensus_12695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 975
fasta sequence
                              [CACAGCCACACTTCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCCGCCGCCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCGACACCGACCGCGATGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACGGCCGCATCACGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGC-TGCAGCGCCGAGGAGTGCG-AGAGGATGATCGCC-TCCGTCGACGTCGACGGCGATGGC-TGCGTCGGGTTCGAGGAGTTCAAGAAGATGATGTGCCGTGATGCCGCTGCAACCGGCGGCGCTGACAAGGCCAAGACGGAGT-AAAACAGTGTCA-GGTCA-TCTAGATGTGCTCGC-TTCTGTTTGTCATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCTTCCATGTGTAATTAGCAGCGCCGTGTATATTATTATATGTGATTATGTGTACACCGATCTGCTGATGTATGCTACTTTGATCTGGACCAGCTAAGATTTGGCCGAACTTTTAATGACAGAATTGCTGGTCATCTTCTCTTCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTACCAAAGGGCAAATTCG]

[+] EMBL AK062711             [CACAGCCACACTTCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCCGCCGCCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCGACACCGACCGCGACGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACGGCCGCATCACGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGC TGCAGCGCCGAGGAGTGCG AGAGGATGATCGCC TCCGTCGACGTCGACGGCGATGGC TGCGTCGGGTTCGAGGAGTTCAAGAAGATGATGTGCCGTGATGCCGCTGCAACCGGCGGCGCTGACAAGGCCAAGACGGAGT AAAACAGTGTCA GGTCA TCTAGATGTGCTCGC TTCTGTTTGTCATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCTTCCATGTGTAATTAGCAGCGCCGTGTATATTATTATATGTGATTATGTGTACACCGATCTGCTGATGTATGCTACTTTGATCTGGACCAGCTAAGATTTGGCCGAACTTTTAATGACAGAATTGCTGGTCATCT                                                                                                         ]
[+] EMBL BE230352             [            TCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCCGCCGCCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCGACACCGACCGCGATGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACGGCCGCATCACGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGCTTGCAACGCCCAGGAGTGCGAAAAGGATGATCGCCTTCCGTCGACGTCGACGGCGATGGCTTGCGTCGGGTTCGAGGAGTTCAAGAAGAT ATGTGCCGTGATG CGTTG AACCGGCGGCGCTTACAAGGGCAAGACGGAGTAAAAACA TGTCAGGGTCATTCTAGATGTGCTCGCTTTCTGGTTGGCATTATT                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE230173             [            TCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTTGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCCGCCGCCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCGACACCGACCGCGATGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF315840             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTCA TCTAGATGTGCTCGC TTCTGTTTGTCATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCTTCCATGTGTAATTAGCAGCGCCGTGTATATTATTATATGTGATTATGTGTACACCGATCTGCTGATGTATGCTACTTTGATCTGGACCAGCTAAGATTTGGCCGAACTTTTAATGACAGAATTGCTGGTCATCTTCTCTTCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTACCAAAGGGCAAATTCG]


>consensus_12695#0 CACAGCCACACTTCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGG CAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTG AGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCG ACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCG CGCCGCCGCCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCG ACACCGACCGCGATGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGC GCGGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACG GCGACGGCCGCATCACGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGCT GCAGCGCCGAGGAGTGCGAGAGGATGATCGCCTCCGTCGACGTCGACGGCGATGGCTGCG TCGGGTTCGAGGAGTTCAAGAAGATGATGTGCCGTGATGCCGCTGCAACCGGCGGCGCTG ACAAGGCCAAGACGGAGTAAAACAGTGTCAGGTCATCTAGATGTGCTCGCTTCTGTTTGT CATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGA GACCATGACTGATGCTTCCATGTGTAATTAGCAGCGCCGTGTATATTATTATATGTGATT ATGTGTACACCGATCTGCTGATGTATGCTACTTTGATCTGGACCAGCTAAGATTTGGCCG AACTTTTAATGACAGAATTGCTGGTCATCTTCTCTTCNNAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTAC CAAAGGGCAAATTCG



consensusID : consensus_12695#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 796
fasta sequence
                              [CACTTCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCCGCCGCCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCGACACCGACCGCGACGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACTGCCGCATCACGGCGGCCGAGCTCGGCAAGGCCTCGGGCGGATCGGCGAGGGCTGCAGCGCCGAGGAGTGCGAGAGGATGATCGGCTTCCGTCGACGGTCACGGGCATGGGCTGCGTCGGGTTCCAGAAGTTCAGAAGATGATGTCCCGGATTGCCGTGCACCGGCAGGCTTACAAGGCAAACCGGGTTAACAATGTAGGGCTATTAAAGGCTTGTTTTGTGGGATATTTGGCCCGAAGTGGTGATAAGAGGTTTAATGGATCTATCCATGATCATGTGAGGTCCTGTGTATGGGCCGCTGGTTTTTAGTGGGAGATAGGAAGTGACTTGTGATGGCGGTAGTGAGTATCTGTTGTGGTAGTAAGATTGTAGTTGTGAGA]

[+] EMBL AW155005             [CACTTCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCCGCCGCCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCGACACCGACCGCGACGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACTGCCGCATCACGGCGGCCGAGCTCGGCAAGGCCTCGGGCGGATCGGCGAGGGCTGCAGCGCCGAGGAGTGCGAGAGGATGATCGGCTTCCGTCGACGGTCACGGGCATGGGCTGCGTCGGGTTCCAGAAGTTCAGAAGATGATGTCCCGGATTGCCGTGCACCGGCAGGCTTACAAGGCAAACCGGGTTAACAATGTAGGGCTATTAAAGGCTTGTTTTGTGGGATATTTGGCCCGAAGTGGTGATAAGAGGTTTAATGGATCTATCCATGATCATGTGAGGTCCTGTGTATGGGCCGCTGGTTTTTAGTGGGAGATAGGAAGTGACTTGTGATGGCGGTAGTGAGTATCTGTTGTGGTAGTAAGATTGTAGTTGTGAGA]
[+] EMBL AU164868             [         TCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCNGGTTGAGAGGCCGACGGNGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGC CGCCATCGCGCCGCCGCCCAGCGAGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI799009             [            CTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCC CGGTGACGCGCGCCATCGCGCCGCCGCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU095569             [                       GCTAATTAAGCTCAAGTTTTTGCTTACGGCAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGC CGCCATCGCGCCGCCGCCCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_12695#1 CACTTCTGATCACTGCTCACTCAGCTAATTAAGCTCAAGCTTTTGCTTACGGCAAGTCTT GCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCG ACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGAC GGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCCGCCG CCCAGCGAGTCCGCCGGCGGCCGCGAGGTGGCCGCCATGATGAACGAGCTCGACACCGAC CGCGACGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGACG CCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACTGCC GCATCACGGCGGCCGAGCTCGGCAAGGCCTCGGGCGGATCGGCGAGGGCTGCAGCGCCGA GGAGTGCGAGAGGATGATCGGCTTCCGTCGACGGTCACGGGCATGGGCTGCGTCGGGTTC CAGAAGTTCAGAAGATGATGTCCCGGATTGCCGTGCACCGGCAGGCTTACAAGGCAAACC GGGTTAACAATGTAGGGCTATTAAAGGCTTGTTTTGTGGGATATTTGGCCCGAAGTGGTG ATAAGAGGTTTAATGGATCTATCCATGATCATGTGAGGTCCTGTGTATGGGCCGCTGGTT TTTAGTGGGAGATAGGAAGTGACTTGTGATGGCGGTAGTGAGTATCTGTTGTGGTAGTAA GATTGTAGTTGTGAGA



consensusID : consensus_12695#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 626
fasta sequence
                              [TTGGATCTCTAGAGCGGCGGAGGTGGCGCATGATGAACGAGCTCGACACCGACCGCGATGGGTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACGGCCGCATCACGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGCTGCAGCGCCGAGGAGTGCGAGAGGATGATCGCCTCCGTCGACGTCGACGGCGATGGCTGCGTCGGGTTCGAGGAGTTCAAGAAGATGATGTGCCGTGATGCCGTGCAACCGGCGGGCTGACAAGGCCAAGACGGAGTAAAACAGTGTCAGGTCATCTAGATGTGCTCGCTTCTGTTTGTCATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCTTCCATGTGTAATTAGCAG-GCCGTGTATATTATTATATGTGATTATGTGTACA-CGATCTGCTTGATGTATGCTACTTTTGATCTGGACCAGCTAAGATTTGGCGGAA-TTTTAATTGACAGAATTGTGAAAAAAAAAAACTCGAGACTA]

[-] EMBL BI796038             [TTGGATCTCTAGAGCGGCGGAGGTGGCGCATGATGAACGAGCTCGACACCGACCGCGATGGGTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACGGCCGCATCACGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGCTGCAGCGCCGAGGAGTGCGAGAGGATGATCGCCTCCGTCGACGTCGACGGCGATGGCTGCGTCGGGTTCGAGGAGTTCAAGAAGATGATGTGCCGTGATGCCGTGCAACCGGCGGGCTGACAAGGCCAAGACGGAGTAAAACAGTGTCAGGTCATCTAGATGTGCTCGCTTCTGTTTGTCATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCTTCCATGTGTAATTAGCAG GCCGTGTATATTATTATATGTGATTATGTGTACA CGATCTGCTTGATGTATGCTACTTTTGATCTGGACCAGCTAAGATTTGGCGGAA TTTTAATTGACAGAATTGTG                     ]
[-] EMBL CF196303             [                                                                                                                                                                                                                                                                                                                                                 gcGCTGACAAGGCCAAGACGGAGTAAAACAGTGTCAGGTCATCTAGATGTGCTCGCTTCTGTTTGTCATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCTTCCATGTGTAATTAGCAGCGCCGTGTATATTATTATATGTGATTATGTGTACACCGATCTGC TGATGTATGCTAC TTTGATCTGGACCAGCTAAGATTTGGCCGAACTTTTAA TGACAAAAAAAAAAAAAAAAAAAACTCGAGACTA]


>consensus_12695#2 TTGGATCTCTAGAGCGGCGGAGGTGGCGCATGATGAACGAGCTCGACACCGACCGCGATG GGTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGC ACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACGGCCGCATCA CGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGCTGCAGCGCCGAGGAGT GCGAGAGGATGATCGCCTCCGTCGACGTCGACGGCGATGGCTGCGTCGGGTTCGAGGAGT TCAAGAAGATGATGTGCCGTGATGCCGTGCAACCGGCGGGCTGACAAGGCCAAGACGGAG TAAAACAGTGTCAGGTCATCTAGATGTGCTCGCTTCTGTTTGTCATTATTTTGACCTAGA AATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCTT CCATGTGTAATTAGCAGGCCGTGTATATTATTATATGTGATTATGTGTACACGATCTGCT TGATGTATGCTACTTTTGATCTGGACCAGCTAAGATTTGGCGGAATTTTAATTGACAGAA TTGTGAAAAAAAAAAACTCGAGACTA



consensusID : consensus_12695#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence
                              [CCGCGGACNTGGCNNCNGNGNACNGCGTGGTNGNCGTCACTCAGCTAATTAAGCTCANNTTTTTGCTTACGGACAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGGCGCCATCGCGCCGCCGCCCAGC]

[+] EMBL AU070677             [CCGCGGACNTGGCNNCNGNGNACNGCGTGGTNGNCGTCACTCAGCTAATTAAGCTCANNTTTTTGCTTACGGACAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTGACGGCGCCATCGCGCCGCCGCCCAGC]


>consensus_12695#3 CCGCGGACNTGGCNNCNGNGNACNGCGTGGTNGNCGTCACTCAGCTAATTAAGCTCANNT TTTTGCTTACGGACAAGTCTTGCAACCATGTCGAACACCACCGAGAAGAAGATGCCGCAG CAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCGGCGGACGCGGAGATCGAGAGGGTC TTCACCCGCTTCGACGCGGACGGGGACGGCAGGATCTCCCCCTCGGAGCTGGCCGCGGTG ACGGCGCCATCGCGCCGCCGCCCAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12695#1      -----------------------------------CACTTC-TGATCACTGCTCAC--TC 22
consensus_12695#3      --------------CCGCGGACNTGGCNNCNG-NGNACNGCGTGGTNGNCG-TCAC--TC 42
consensus_12695#0      --------------------------CACAGC-CACACTTC-TGATCACTGCTCAC--TC 30
consensus_12695#2      TTGGATCTCTAGAGCGGCGGAGGTGGCGCATGATGAACGAGCTCGACACCGACCGCGATG 60
                                                           **    *       *  * *  * 

consensus_12695#1      AGCTAATTAAGCTCAAGCTTTTGCTTACGG-CAAGTCTTGCAACCATGTCGAACACCACC 81
consensus_12695#3      AGCTAATTAAGCTCANNTTTTTGCTTACGGACAAGTCTTGCAACCATGTCGAACACCACC 102
consensus_12695#0      AGCTAATTAAGCTCAAGCTTTTGCTTACGG-CAAGTCTTGCAACCATGTCGAACACCACC 89
consensus_12695#2      GGTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGGACGCCGAGC 120
                        * *  *  * ***      **     **  * *     **   *  *  **   * * *

consensus_12695#1      GAGAAG--AAGATGC-CGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCG--G 136
consensus_12695#3      GAGAAG--AAGATGC-CGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCG--G 157
consensus_12695#0      GAGAAG--AAGATGC-CGCAGCAGCAGCAGGTTGAGAGGCCGACGGCGTTGGCGCCG--G 144
consensus_12695#2      ACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACGGCCGCATCA 180
                         ** *   ** *** *** **    *  *  *  ** * ********  ***  *    

consensus_12695#1      CGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGAC------------GGGG 184
consensus_12695#3      CGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGAC------------GGGG 205
consensus_12695#0      CGGACGCGGAGATCGAGAGGGTCTTCACCCGCTTCGACGCGGAC------------GGGG 192
consensus_12695#2      CGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGCTGCAGCGCCGAGGAGT 240
                       ***  ** *** ***  * **** **  ***  *** ** ** *            * * 

consensus_12695#1      ACGGCAGGATC-TCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCC---GCCG 240
consensus_12695#3      ACGGCAGGATC-TCCCCCTCGGAGCTGGCCGCGGTGACG-GCGCCATCGCGCC---GCCG 260
consensus_12695#0      ACGGCAGGATC-TCCCCCTCGGAGCTGGCCGCGGTGACGCGCGCCATCGCGCC---GCCG 248
consensus_12695#2      GCGAGAGGATGATCGCCTCCGTCGACGTCGACGGCGATG-GCTGCGTCGGGTTCGAGGAG 299
                        **  *****  ** **  **  *  * *  *** ** * **  * *** *     *  *

consensus_12695#1      CCCAGCGAGTCCGCCGGCGGCCGCGAGGTG--GCCGCCATGATGAACGAGCTCGACACCG 298
consensus_12695#3      CCCAGC------------------------------------------------------ 266
consensus_12695#0      CCCAGCGAGTCCGCCGGCGGCCGCGAGGTG--GCCGCCATGATGAACGAGCTCGACACCG 306
consensus_12695#2      TTCAAGAAGATGATGTGCCGTGATGCCGTGCAACCGGCGGGCTGACAAGGCCAAGACGGA 359
                         **                                                        

consensus_12695#1      ACCGCGACGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGG- 357
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      ACCGCGATGGCTTCGTCGACCTCGGCGAGTTCGCGGCGTTCCACGGCCGCGGGCGCGGGG 366
consensus_12695#2      GTAAAACAGTGTCAGGTCATCTAGATGTGCTCGCTTCTGTTTGTCATTATTTTGACCTAG 419
                                                                                   

consensus_12695#1      ACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACT 417
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      ACGCCGAGCACGAGGCCGAGCTGCGCGCCGCGTTCGACGTGTACGACGTCGACGGCGACG 426
consensus_12695#2      AAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCATGACTGATGCT 479
                                                                                   

consensus_12695#1      GCCGCATCACGGCGGCCGAGCTCGGCAAGG-CCTCGGGCGGATCGGCGAGGGCTGCAGCG 476
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      GCCGCATCACGGCGGCCGAGCTCGGCAAGGTCCTCGGCCGGATCGGCGAGGGCTGCAGCG 486
consensus_12695#2      TCCATGTGTAATTAGCAGGCCGTGTATATTATTATATGTGATTATGTGTACACGATCTGC 539
                                                                                   

consensus_12695#1      CCGAGGAGTGCGAGAGGATGATCGGCTTCCGTCGACGGTCACGGGCATGGGCTGCGTCGG 536
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      CCGAGGAGTGCGAGAGGATGATCG-CCTCCGTCGACGTCGACGGCGATGGCTGCGTCGGG 545
consensus_12695#2      TTGATGTATGCTACTTTTGATCTGGACCAGCTAAGATTTGGCGGAATTTTAATTGACAGA 599
                                                                                   

consensus_12695#1      GTTCCAGAAGTTCAGAAGATGATGTCCCGGATTGCCG-TGCACCGGCAGGCTTACAAGGC 595
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      TTCGAGGAGTTCAAGAAGATGATGTGCCGTGATGCCGCTGCAACCGGCGGCGCTGACAAG 605
consensus_12695#2      ATTGTGAAAAAAAAAAACTCGAGACTA--------------------------------- 626
                                                                                   

consensus_12695#1      AAACCGGGTTAACAATGTAGGGCTATTAAAGGCTTGTTTTGTGGGATATTTGGCCCGAAG 655
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      GCCAAGACGGAGTAAAACAGTGTCAGGTCATCTAGATGTGCTCGCTTCTGTTTGTCATTA 665
consensus_12695#2      ------------------------------------------------------------
                                                                                   

consensus_12695#1      TGGTGATAAGAGGTTTAATGGATCTATCCATGATCATGTGAGGTCCTGTGTATGGGCCGC 715
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      TTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATCCATGAGACCA 725
consensus_12695#2      ------------------------------------------------------------
                                                                                   

consensus_12695#1      TGGTTTTTAGTGGGAGATAGGAAGTGACTTGTGATGGCGGTAGTGAGTATCTGTTGTGGT 775
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      TGACTGATGCTTCCATGTGTAATTAGCAGCGCCGTGTATATTATTATATGTGATTATGTG 785
consensus_12695#2      ------------------------------------------------------------
                                                                                   

consensus_12695#1      AGTAAGATTGTAGTTGTGAGA--------------------------------------- 796
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      TACACCGATCTGCTGATGTATGCTACTTTGATCTGGACCAGCTAAGATTTGGCCGAACTT 845
consensus_12695#2      ------------------------------------------------------------
                                                                                   

consensus_12695#1      ------------------------------------------------------------
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      TTAATGACAGAATTGCTGGTCATCTTCTCTTCNNAAAAAAAAAAAAAAAAAAAAAAAAAA 905
consensus_12695#2      ------------------------------------------------------------
                                                                                   

consensus_12695#1      ------------------------------------------------------------
consensus_12695#3      ------------------------------------------------------------
consensus_12695#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTACCAAAG 965
consensus_12695#2      ------------------------------------------------------------
                                                                                   

consensus_12695#1      ----------
consensus_12695#3      ----------
consensus_12695#0      GGCAAATTCG 975
consensus_12695#2      ----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)