cluster # 12709

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Oryza sativa
cluster # 12709 cluster # 12709 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12709#0 length = 2065 sequences # 10

consensus_12709#1 length = 570 sequences # 1

consensusID : consensus_12709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2065
fasta sequence

                              [GTTCTCTCTCCCCCCCTCCCCATCCCTCCCCTCCCCTCAACGAAACGAAATCTCGATCAATCTCTCCTCCATTCCCGCATCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGCGACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATT--CCCCCCCCCCCCTCCTCCCCACTTCCCTC-GTCGCCTCCGAAAAGCCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCCGCAGCCCCAGAGTGATGGACTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAAACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAGTTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTATTCTACCGAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCCAGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTCGCACCCAAGAGCCAGTGTTGTCAGATCATCATATTCAGCAATGTTAGGATATGCTGCTAACCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCAGTCGTCGAATGCTGAAATGCTCCAGTATTTATGTAATAATAATACCCATGGGGGACACACTGTGCCAACCTTTTTCCCAGCTCCTGCCTGTGGCGCGCCAGATTACATGGATACTATAACTGTCCCTGATAATCACACCCAGAGCGGCTCCTCTACTGTTACATCTGATGCTGCTAAACAAAATGAATGGTGGGCAGATATAATGAATGATGACTGGAAAGATATTCTAGATGCAACAGCTACTGATTCTCAGTCAAAGTCCATGGCCCAACCTTCCAATTCTGCTGCATCACAGCCTGCTTTCAATCAGTCAACTTCATCCCATAGTGGCGATATTTGTCCTGTCACAAGTCCTCCTCCCAACAACAGCAATGCCTCTGCAAGTAAACAACGGATGAGATGGACCCCGGAATTGCATGAATCTTTTGTCCATGCTGTAAATAAGCTTGGTGGTAGTGAAAAAGCTACTCCAAAAGGTGTGCTCAAGCTTATGAAAGTTGATGGTTTGACAATCTATCATGTTAAGAGTCATCTGCAGAAGTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAGGTAAAACACAAGAAGGGAAAACTACCGATGAGTTGTCTTTGGACCTGAAAGCGAGCATGGATCTTACTGAAGCACTGCGCCTTCAGATGGAAGTTCAGAAGCGCCTTCATGAACAACTCGAGATTCAGAGGAAATTGCAGCTTCGAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATCTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGCTGAACTATTTAAAAGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTATGAAATAAGGAGAATTTGAGATCTAGCCATCTTCCTGGGTACAATTTTTATTTCAGGGAGTCAGTTGTAAAAGGCTACGGAACTCCCTCTTCCTCCTTGCAGCTCAGAAGATATTGAGCTAAATAAAGGGATGTCCCGGGTTACTG]

[+] EMBL CB638461             [GTTCTCTCTCCCCCCCTCCCCATCCCTCCCCTCCCCTCAACGAAACGAAATCTCGATCAATCTCTCCTCCATTCCCGCATCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGCGACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATT   CCCCCCCCCCCTCCTCCCCACTTCCCTC GTCGCCTCCGAAAAGCCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCCGCAGCCCCAGAGTGATGGACTAACATCTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAAACTATTTTATGGGAAAGAAGCAAATCTTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU182692             [      TCTCCCCCCCTCCCCATCCCTCCCCTCCCCTCAACGAAACGAAATCTCGATCAATCTCTCCTCCATTCCCGCATCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGCGACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATT  CCCCCCCCCCCCTCCTCCCCACTTCCCTC GTCGCCTCCGAAAAGCCAAGCCGNTCCCCGCCGCGCCGATCGCGCCGCCGCAGCCCCAGAGTGATGGACTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAAACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAGTTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTATTCTACCGAAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK063486             [                                                          AATCTCTCCTCCATTCCCGCATCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGCGACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATT  CCCCCCCCCCCCTCCTCCCCACTTCCCTC GTCGCCTCCGAAAAGCCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCCGCAGCCCCAGAGTGATGGACTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAAACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAGTTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTATTCTACCGAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCCAGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTCGCACCCAAGAGCCAGTGTTGTCAGATCATCATATTCAGCAATGTTAGGATATGCTGCTAACCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCAGTCGTCGAATGCTGAAATGCTCCAGTATTTATGTAATAATAATACCCATGGGGGACACACTGTGCCAACCTTTTTCCCAGCTCCTGCCTGTGGCGCGCCAGATTACATGGATACTATAACTGTCCCTGATAATCACACCCAGAGCGGCTCCTCTACTGTTACATCTGATGCTGCTAAACAAAATGAATGGTGGGCAGATATAATGAATGATGACTGGAAAGATATTCTAGATGCAACAGCTACTGATTCTCAGTCAAAGTCCATGGCCCAACCTTCCAATTCTGCTGCATCACAGCCTGCTTTCAATCAGTCAACTTCATCCCATAGTGGCGATATTTGTCCTGTCACAAGTCCTCCTCCCAACAACAGCAATGCCTCTGCAAGTAAACAACGGATGAGATGGACCCCGGAATTGCATGAATCTTTTGTCCATGCTGTAAATAAGCTTGGTGGTAGTGAAAAAGCTACTCCAAAAGGTGTGCTCAAGCTTATGAAAGTTGATGGTTTGACAATCTATCATGTTAAGAGTCATCTGCAGAAGTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAGGTAAAACACAAGAAGGGAAAACTACCGATGAGTTGTCTTTGGACCTGAAAGCGAGCATGGATCTTACTGAAGCACTGCGCCTTCAGATGGAAGTTCAGAAGCGCCTTCATGAACAACTCGAGATTCAGAGGAAATTGCAGCTTCGAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATCTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGCTGAACTATTTAAAAGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTATGAAATAAGGAGAATTTGAGATCTAGCCATCTTCCTGGGTACAATTTTTATTTCAGGGAGTCAGTTGTAAAAGGCTACGGAACTCCCTCTTCCTCCTTGCAGCTCAGAAGATATTGAGCTAAA                       ]
[+] EMBL CB633907             [                                                               CTCCTCTTTTCACGCATCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGCGACACCGAGGGGAAAAAAAAACCCGATAGCCCCAATCAGATTCCCCCCCCCCCCCCTCCTCACCAGTTCCCTCAGTCGCCTCCGAAAAACCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCCGCAGCCCCAAAGTGATGGATTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAAACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAAAATTGCAGTGAGGGAATTTTGATCTGAGGCAATTGCAAAACAAGTATTTCTGGAGAAATGTCATCCTCCTTGCCTATTCTACCCAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCCAGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTCGCACCCAAGAGCCATTGGGGTCAGATCATCATATTCAGCAATGTTAGGATACGCTGCTAACCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCAGACGTCAAATGCTGAAATGCTCCAGTCTTTATGTAATAAAAATACCCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK109510             [                                                                               TCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGCGACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATT   CCCCCCCCCCCTCCTCCCCACTTCCCTC GTCGCCTCCGAAAAGCCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCCGCAGCCCCAGAGTGATGGACTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAAACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAGTTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTATTCTACCGAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCCAGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTCGCACCCAAGAGCCAGTGTTGTCAGATCATCATATTCAGCAATGTTAGGATATGCTGCTAACCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCAGTCGTCGAATGCTGAAATGCTCCAGTATTTATGTAATAATAATACCCATGGGGGACACACTGTGCCAACCTTTTTCCCAGCTCCTGCCTGTGGCGCGCCAGATTACATGGATACTATAACTGTCCCTGATAATCACACCCAGAGCGGCTCCTCTACTGTTACATCTGATGCTGCTAAACAAAATGAATGGTGGGCAGATATAATGAATGATGACTGGAAAGATATTCTAGATGCAACAGCTACTGATTCTCAGTCAAAGTCCATGGCCCAACCTTCCAATTCTGCTGCATCACAGCCTGCTTTCAATCAGTCAACTTCATCCCATAGTGGCGATATTTGTCCTGTCACAAGTCCTCCTCCCAACAACAGCAATGCCTCTGCAAGTAAACAACGGATGAGATGGACCCCGGAATTGCATGAATCTTTTGTCCATGCTGTAAATAAGCTTGGTGGTAGTGAAAAAGCTACTCCAAAAGGTGTGCTCAAGCTTATGAAAGTTGATGGTTTGACAATCTATCATGTTAAGAGTCATCTGCAGAAGTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAGGTAAAACACAAGAAGGGAAAACTACCGATGAGTTGTCTTTGGACCTGAAAGCGAGCATGGATCTTACTGAAGCACTGCGCCTTCAGATGGAAGTTCAGAAGCGCCTTCATGAACAACTCGAGATTCAGAGGAAATTGCAGCTTCGAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATCTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGC                                                                                                                                                                                                                                                              ]
[+] EMBL CB627880             [                                                                                   CTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGCGACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATTCCCCCCCCCCCCCCTCCTCCCCACTTCCCTC GTCGCCTCCGAAAAGCCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCCGCAGCCCCAGAGTGATGGATTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAAACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAGTTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTATTCTACCGAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCCAGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTCGCACCCAAGAGCCAGTGTTGTCAGATCATCATATTCAGCAATGTTAGGATACGCTGCTAACCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCAGTCGTCGAATGCTGAAATGCTCCAGTCTTTATGTAATAATAATACCCATGGGGGACACACTGTGCCAACCTTTTTCCCAGCTCCTGCCTGTGGCGCGCCAGATTACATGGATACTATAACTGTCCCTGATAATCACACCCAGAGCGGCTCCTCTACTGTTACATCTGATGCTGCTAAACAAAATGAATGGTGGGCAGATATAATGAATGATGACTGGAAAGATATTCTAGATGNCACAGCTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB642772             [                                                                                                                                                                                                                               GCCGCCCTTATAGCGCCGCCGCAGCCCCAGAGTGATGGACTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCACCCTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAGTTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTATTCTACCGAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCCAGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTCGCACCCAAGAGCCAGTGTTGTCAGATCATCATATTCAGCAATGTTAGGATATGCTGCTAACCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCAGTCGTCGAATGCTGAAATGCTCCAGTATTTATGTAATAATAATACCCATGGGGGACACACTGTGCCAACCTTTTTCCCAGCTCCTGCCTGTGGCGCGCCAGATTACATGGATACTATAACTGTCCCTGATAATCACACCCAGAGCGGCTCCTCTACTGTTACATCTGATGCTGCTAAACAAAATGAATGGTGGGCAGATATAATGAATGATGACTGGAAAGATATTCTAGATGCAACAGCTACTGATTCTCAGTCAAAGTCCATGGCCCAACCTTCCAATTCTGCTGCATCACAGCCTGCTTTCAATCAGTCAACTTCATCCCATAGTGGCGATATTTGTCCTGTCACAAGTCCTCCTCCCAACAACAGCAATGCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB629862             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACTACCGATGAGTTGTCTTTGGACCTGAAAGCGAGCATGGATCTTACTGAAGCACTGCGCCTTCAGATGGAAGTTCAGAAGCGCCTTCATGAACAACTCGAGATTCAGAGGAAATTGCAGCTTCGAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATTTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGCTGAACTATTTAAATGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAAGTTATCTCCGGTACTATGAAATAAGGAGAATTTtttaaagga                                                                                                                        ]
[-] EMBL CB669203             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGTCTTTGGACCTGAAAGCGAGCATGGATCTTACTGAAGCACTGCGCCTTCAGATGGAAGTTCAGAAGCGCCTTCATGAACAACTCGAGATTCAGAGGAAATTGCAGCTTCGAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATCTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGCTGAACTATTTAAAAGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCAGGACTATGAAATAAGGAGAATTTGAGATCTAGCCAaaaaaaaga                                                                                                            ]
[-] EMBL CB633908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AATTGCAGCTTGAAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATCTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGCTGAACTATTTAAATGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTATGAAATAAGGAGAATTTGAGATCTAGCCATCTTCCTGGGTACAATTTTTATTTCAGGGAGTCAGTTGTAAAAGGCTACGGAACTCCCTCTTCCTCCTTGCAGCTCAGAAGATATTGAGCTACTTAAAGGGATGTCCCGGGTTACTG]




>consensus_12709#0
GTTCTCTCTCCCCCCCTCCCCATCCCTCCCCTCCCCTCAACGAAACGAAATCTCGATCAA
TCTCTCCTCCATTCCCGCATCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGC
GACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATTCCCCCCCCCCCCTCCTCC
CCACTTCCCTCGTCGCCTCCGAAAAGCCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCC
GCAGCCCCAGAGTGATGGACTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAA
ACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAG
TTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTAT
TCTACCGAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCC
AGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTC
GCACCCAAGAGCCAGTGTTGTCAGATCATCATATTCAGCAATGTTAGGATATGCTGCTAA
CCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCA
GTCGTCGAATGCTGAAATGCTCCAGTATTTATGTAATAATAATACCCATGGGGGACACAC
TGTGCCAACCTTTTTCCCAGCTCCTGCCTGTGGCGCGCCAGATTACATGGATACTATAAC
TGTCCCTGATAATCACACCCAGAGCGGCTCCTCTACTGTTACATCTGATGCTGCTAAACA
AAATGAATGGTGGGCAGATATAATGAATGATGACTGGAAAGATATTCTAGATGCAACAGC
TACTGATTCTCAGTCAAAGTCCATGGCCCAACCTTCCAATTCTGCTGCATCACAGCCTGC
TTTCAATCAGTCAACTTCATCCCATAGTGGCGATATTTGTCCTGTCACAAGTCCTCCTCC
CAACAACAGCAATGCCTCTGCAAGTAAACAACGGATGAGATGGACCCCGGAATTGCATGA
ATCTTTTGTCCATGCTGTAAATAAGCTTGGTGGTAGTGAAAAAGCTACTCCAAAAGGTGT
GCTCAAGCTTATGAAAGTTGATGGTTTGACAATCTATCATGTTAAGAGTCATCTGCAGAA
GTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAGGTAAAACACAAGAAGGGAAAAC
TACCGATGAGTTGTCTTTGGACCTGAAAGCGAGCATGGATCTTACTGAAGCACTGCGCCT
TCAGATGGAAGTTCAGAAGCGCCTTCATGAACAACTCGAGATTCAGAGGAAATTGCAGCT
TCGAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAG
CACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATCTGAGCCAAGCAA
TTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCC
TAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTC
CCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGA
ATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCAT
GTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAA
GTCTATTGAGCTGAACTATTTAAAAGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTG
TTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTAT
GAAATAAGGAGAATTTGAGATCTAGCCATCTTCCTGGGTACAATTTTTATTTCAGGGAGT
CAGTTGTAAAAGGCTACGGAACTCCCTCTTCCTCCTTGCAGCTCAGAAGATATTGAGCTA
AATAAAGGGATGTCCCGGGTTACTG

consensusID : consensus_12709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [ACGAGACAAGGGGAATATCTGCAGAAGATGTTTGAAAAGCAGTGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATGTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTTATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGCTGAACTATTTAAATGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTATGAAATAAGGAGAATTTGAGATCTAAAAAAAAAAAAA]

[-] EMBL CA763260             [ACGAGACAAGGGGAATATCTGCAGAAGATGTTTGAAAAGCAGTGTAAATCCAGCACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATGTGAGCCAAGCAATTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCCTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTGACAGTTAACTTATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTATTGAGCTGAACTATTTAAATGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTATGAAATAAGGAGAATTTGAGATCTAAAAAAAAAAAAA]




>consensus_12709#1
ACGAGACAAGGGGAATATCTGCAGAAGATGTTTGAAAAGCAGTGTAAATCCAGCACACAG
AGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATGTGAGCCAAGCAATTCTGTA
GACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCCCTAAAAA
TTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATTCCCCAGT
AATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATGAATCTTG
ACAGTTAACTTATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCATGTACTT
GGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCAAGTCTAT
TGAGCTGAACTATTTAAATGGAACATAAAAAAGCCTAATAGAGAAGGGGAACTGTTTGGT
GTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTATGAAATA
AGGAGAATTTGAGATCTAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12709#0      GTTCTCTCTCCCCCCCTCCCCATCCCTCCCCTCCCCTCAACGAAACGAAATCTCGATCAA 60
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TCTCTCCTCCATTCCCGCATCCTCTCTCTCTCTCCCTCCTCACCCTCACCTCATCGTCGC 120
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      GACACCGAGGGGAAAAAAAAAAGCGATCGCCCCAATCAGATTCCCCCCCCCCCCTCCTCC 180
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      CCACTTCCCTCGTCGCCTCCGAAAAGCCAAGCCGCTCCCCGCCGCGCCGATCGCGCCGCC 240
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      GCAGCCCCAGAGTGATGGACTAACATTTTGGGCGAGTTTGATCTGTAGAAAGGCATTCAA 300
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      ACTATTTTATGGGAAAGAAGCAAATCTTATGCACTATTTGCAGAATTGCAGTGAGGGAAG 360
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TTTGATCTGAGGCAGTTGCAAAACAAGTATTTCTGGAGAGATGTCATCCTCCTTGCCTAT 420
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TCTACCGAAATCTTTGAAAGATATCCCAAGATCCCATAATACCCAGAATATTCTGATGCC 480
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      AGGGCAACTGCCAAATGATTCTATGCCTTTGCACCAGAGTGCAACTCAATCTTCTATTTC 540
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      GCACCCAAGAGCCAGTGTTGTCAGATCATCATATTCAGCAATGTTAGGATATGCTGCTAA 600
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      CCCAATTGATTCTGTGTCTAGCCATGAGGGGCATTTTATGGCTGCTCCCTTTATTTCTCA 660
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      GTCGTCGAATGCTGAAATGCTCCAGTATTTATGTAATAATAATACCCATGGGGGACACAC 720
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TGTGCCAACCTTTTTCCCAGCTCCTGCCTGTGGCGCGCCAGATTACATGGATACTATAAC 780
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TGTCCCTGATAATCACACCCAGAGCGGCTCCTCTACTGTTACATCTGATGCTGCTAAACA 840
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      AAATGAATGGTGGGCAGATATAATGAATGATGACTGGAAAGATATTCTAGATGCAACAGC 900
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TACTGATTCTCAGTCAAAGTCCATGGCCCAACCTTCCAATTCTGCTGCATCACAGCCTGC 960
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TTTCAATCAGTCAACTTCATCCCATAGTGGCGATATTTGTCCTGTCACAAGTCCTCCTCC 1020
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      CAACAACAGCAATGCCTCTGCAAGTAAACAACGGATGAGATGGACCCCGGAATTGCATGA 1080
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      ATCTTTTGTCCATGCTGTAAATAAGCTTGGTGGTAGTGAAAAAGCTACTCCAAAAGGTGT 1140
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      GCTCAAGCTTATGAAAGTTGATGGTTTGACAATCTATCATGTTAAGAGTCATCTGCAGAA 1200
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      GTACCGCACAGCTCGCTACAAGCCAGACCTATCAGAAGGTAAAACACAAGAAGGGAAAAC 1260
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TACCGATGAGTTGTCTTTGGACCTGAAAGCGAGCATGGATCTTACTGAAGCACTGCGCCT 1320
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TCAGATGGAAGTTCAGAAGCGCCTTCATGAACAACTCGAGATTCAGAGGAAATTGCAGCT 1380
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      TCGAATTGAAGAACAAGGGAAATATCTGCAGAAGATGTTTGAAAAGCAATGTAAATCCAG 1440
consensus_12709#1      -------ACGAGACAAGGGGAATATCTGCAGAAGATGTTTGAAAAGCAGTGTAAATCCAG 53
                                   ******* **************************** ***********

consensus_12709#0      CACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATCTGAGCCAAGCAA 1500
consensus_12709#1      CACACAGAGTGTGCAGGATCCATCGTCTGGAGATACAGCAACTCCATGTGAGCCAAGCAA 113
                       *********************************************** ************

consensus_12709#0      TTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCC 1560
consensus_12709#1      TTCTGTAGACAAGGACAGTGAGGCTGCCTTGGACCCAAACAGAATAGGAGACAACCACCC 173
                       ************************************************************

consensus_12709#0      -TAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATT 1619
consensus_12709#1      CTAAAAATTCTACCAATGTAGGTGCCAACCTGAAAACTGCAGCAACCGAGTCCCCTGATT 233
                        ***********************************************************

consensus_12709#0      CCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATG 1679
consensus_12709#1      CCCCAGTAATTGCAACTGATGGATCGGAGCTCCCCCAAGAGAAGCGTCGTAGAGTGCATG 293
                       ************************************************************

consensus_12709#0      AATCTTGACAGTTAACTCATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCA 1739
consensus_12709#1      AATCTTGACAGTTAACTTATCTGAATGTAGAGTGCATTCAGATTATAGCTGTTCTGCCCA 353
                       ***************** ******************************************

consensus_12709#0      TGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCA 1799
consensus_12709#1      TGTACTTGGTAAAAGAAAAATGGTTCCATCTATATTGGCTGAAATTCTAGTGCTGATCCA 413
                       ************************************************************

consensus_12709#0      AGTCTATTGAGCTGAACTATTTAAAAGGAACATAAAAAAGCCTAATAGAGAAGGGGAACT 1859
consensus_12709#1      AGTCTATTGAGCTGAACTATTTAAATGGAACATAAAAAAGCCTAATAGAGAAGGGGAACT 473
                       ************************* **********************************

consensus_12709#0      GTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTA 1919
consensus_12709#1      GTTTGGTGTCCGCTTGTATTATAATTCAGTAGCAATAACTCAAATTTATCTCCGGTACTA 533
                       ************************************************************

consensus_12709#0      TGAAATAAGGAGAATTTGAGATCTAGCCATCTTCCTGGGTACAATTTTTATTTCAGGGAG 1979
consensus_12709#1      TGAAATAAGGAGAATTTGAGATCTAAAAAAAAAAAAA----------------------- 570
                       *************************   *                               

consensus_12709#0      TCAGTTGTAAAAGGCTACGGAACTCCCTCTTCCTCCTTGCAGCTCAGAAGATATTGAGCT 2039
consensus_12709#1      ------------------------------------------------------------
                                                                                   

consensus_12709#0      AAATAAAGGGATGTCCCGGGTTACTG 2065
consensus_12709#1      --------------------------